Wall clock time and date at job start Tue Mar 31 2020 07:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46978 * 2 1 4 4 C 1.34225 * 116.99704 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00275 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99682 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46892 * 180.02562 * 6 4 3 8 8 C 1.53124 * 109.51973 * 185.00057 * 7 6 4 9 9 C 1.53037 * 109.27763 * 182.43801 * 8 7 6 10 10 N 1.46848 * 109.52141 * 59.17702 * 9 8 7 11 11 C 1.46906 * 110.99842 * 174.16102 * 10 9 8 12 12 H 1.08995 * 109.47205 * 58.59097 * 11 10 9 13 13 C 1.50699 * 109.47289 * 298.58405 * 11 10 9 14 14 H 1.08000 * 119.99674 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00231 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99602 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46794 * 60.00531 * 17 15 13 19 19 H 1.48504 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47220 * 300.00541 * 17 15 13 21 21 C 1.53002 * 109.46994 * 178.58576 * 11 10 9 22 22 C 1.53009 * 109.47213 * 57.44735 * 21 11 10 23 23 C 1.46849 * 111.20305 * 298.25569 * 10 9 8 24 24 C 1.53041 * 109.51620 * 61.74187 * 23 10 9 25 25 H 1.08997 * 109.47440 * 300.00058 * 1 2 3 26 26 H 1.09002 * 109.47234 * 60.00346 * 1 2 3 27 27 H 1.09007 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46916 * 239.99908 * 2 1 3 29 29 H 1.08997 * 109.46790 * 119.99836 * 2 1 3 30 30 H 1.09000 * 109.47056 * 59.99926 * 6 4 3 31 31 H 1.08997 * 109.47570 * 299.99775 * 6 4 3 32 32 H 1.09000 * 109.57744 * 305.15376 * 7 6 4 33 33 H 1.08997 * 109.50835 * 62.50247 * 8 7 6 34 34 H 1.08998 * 109.50580 * 302.37451 * 8 7 6 35 35 H 1.08998 * 109.46346 * 299.16509 * 9 8 7 36 36 H 1.08998 * 109.46671 * 179.19053 * 9 8 7 37 37 H 0.97001 * 119.99372 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47319 * 297.45175 * 21 11 10 39 39 H 1.08996 * 109.47399 * 177.44405 * 21 11 10 40 40 H 1.08998 * 109.46907 * 175.27765 * 22 21 11 41 41 H 1.08999 * 109.46692 * 55.27861 * 22 21 11 42 42 H 1.09001 * 109.46634 * 295.27796 * 22 21 11 43 43 H 1.08996 * 109.46388 * 181.75661 * 23 10 9 44 44 H 1.08997 * 109.46098 * 301.73038 * 23 10 9 45 45 H 1.09005 * 109.50075 * 180.87894 * 24 23 10 46 46 H 1.08998 * 109.50492 * 60.76270 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0348 4.2664 0.1254 9 6 7.5618 4.1856 0.0638 10 7 7.9701 3.5775 -1.2090 11 6 9.4306 3.6098 -1.3633 12 1 9.8955 3.0778 -0.5333 13 6 9.9035 5.0407 -1.3708 14 1 9.1903 5.8455 -1.2705 15 6 11.2465 5.3223 -1.5046 16 7 12.1149 4.3421 -1.6262 17 14 11.8325 7.0960 -1.5146 18 1 11.4547 7.7492 -0.2356 19 1 13.3090 7.1286 -1.6704 20 1 11.1996 7.8200 -2.6461 21 6 9.8192 2.9374 -2.6815 22 6 9.1159 3.6449 -3.8417 23 6 7.4583 2.2065 -1.3308 24 6 5.9282 2.2282 -1.3108 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.5843 3.4701 0.8895 31 1 3.5852 3.4691 -0.8904 32 1 5.7823 2.2481 0.8401 33 1 5.7317 4.7034 1.0767 34 1 5.6699 4.8864 -0.6934 35 1 7.9269 3.5768 0.8908 36 1 7.9818 5.1887 0.1382 37 1 13.0597 4.5403 -1.7207 38 1 9.5174 1.8903 -2.6581 39 1 10.8987 3.0015 -2.8178 40 1 9.4569 3.2209 -4.7861 41 1 9.3516 4.7088 -3.8149 42 1 8.0383 3.5091 -3.7504 43 1 7.8031 1.7722 -2.2692 44 1 7.8240 1.6069 -0.4972 45 1 5.5488 1.2091 -1.3856 46 1 5.5615 2.8162 -2.1522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:17 Heat of formation + Delta-G solvation = -103.124997 kcal Electronic energy + Delta-G solvation = -23375.227432 eV Core-core repulsion = 20071.202819 eV Total energy + Delta-G solvation = -3304.024613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65151 -38.59100 -36.81010 -35.14602 -32.61791 -31.94583 -31.05284 -30.06496 -28.47342 -26.06710 -24.05475 -23.27223 -22.38068 -22.02070 -20.62491 -19.50753 -18.74731 -17.66971 -16.78821 -16.29920 -16.02551 -15.43255 -14.76316 -14.23631 -14.09736 -14.00251 -13.56374 -13.41879 -13.19509 -12.92420 -12.75905 -12.36253 -12.23825 -12.02931 -11.81324 -11.72642 -11.57472 -11.33174 -10.90424 -10.83785 -10.76044 -10.67741 -10.55054 -10.43924 -10.32341 -10.04994 -9.83978 -9.69766 -9.50278 -9.27170 -8.72231 -8.33828 -7.03416 -5.95458 -3.99027 2.18191 2.56769 3.34250 3.39025 3.41509 4.44372 4.57262 4.64721 4.72642 4.83669 4.94474 4.99672 5.10581 5.26121 5.36182 5.45584 5.47094 5.57798 5.58626 5.66428 5.84120 5.85446 6.05281 6.17824 6.21257 6.33845 6.40878 6.44528 6.56422 6.60683 6.62724 6.70773 6.77394 6.84126 6.88949 7.18060 7.39703 7.49165 7.72046 7.73038 7.83337 7.88928 8.30265 8.42018 8.69311 9.06721 9.64738 11.10833 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.003379 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.590270 B = 8284.693479 C = 8662.775338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.501 6.501 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.109 4.109 9 C 0.065 3.935 10 N -0.528 5.528 11 C 0.217 3.783 12 H -0.005 1.005 13 C -0.494 4.494 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.114 4.114 22 C -0.121 4.121 23 C 0.054 3.946 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.085 0.915 37 H 0.260 0.740 38 H 0.014 0.986 39 H 0.092 0.908 40 H 0.014 0.986 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.017 0.983 45 H 0.069 0.931 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 -5.196 2.997 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.303 3.697 5 O -0.388 6.388 6 C -0.145 4.145 7 C -0.095 4.095 8 C -0.147 4.147 9 C -0.063 4.063 10 N -0.254 5.254 11 C 0.111 3.889 12 H 0.013 0.987 13 C -0.533 4.533 14 H 0.079 0.921 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.152 4.152 22 C -0.178 4.178 23 C -0.075 4.075 24 C -0.151 4.151 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.110 0.890 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.335 -5.270 2.595 20.208 hybrid contribution 0.785 0.198 0.668 1.049 sum -18.551 -5.073 3.263 19.507 Atomic orbital electron populations 1.21804 0.92775 1.02869 1.03470 1.22986 0.95237 0.80558 1.02572 1.86519 1.25169 1.32153 1.84319 1.24006 0.80155 0.93345 0.72198 1.90659 1.60085 1.43325 1.44719 1.21583 0.97195 0.90192 1.05550 1.21096 0.90351 0.98139 0.99889 1.21674 0.96937 0.94965 1.01140 1.21891 0.92794 1.00949 0.90686 1.62049 1.15425 1.16083 1.31812 1.19232 0.80380 0.96281 0.92979 0.98740 1.21030 0.91733 0.91583 1.48925 0.92068 1.24910 0.96819 0.96949 0.95533 1.69875 1.02094 1.30860 1.50462 0.86643 0.77412 0.85315 0.78513 1.20443 1.21490 1.20275 1.21602 1.03025 0.94498 0.96057 1.21473 0.99100 1.01563 0.95653 1.22034 0.93604 0.91416 1.00416 1.21755 0.96551 1.00647 0.96161 0.91543 0.91481 0.90355 0.91266 0.91365 0.87958 0.87639 0.90913 0.92407 0.91196 0.96555 0.89677 0.93027 0.96766 0.88999 0.96648 0.92218 0.94123 0.90786 0.96503 0.91246 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.07 10.22 -39.24 -0.40 -4.47 16 4 C 0.46 5.79 7.69 36.01 0.28 6.07 16 5 O -0.50 -7.75 13.75 -18.75 -0.26 -8.01 16 6 C -0.11 -1.18 5.29 -27.88 -0.15 -1.33 16 7 C -0.08 -1.07 1.90 -90.50 -0.17 -1.24 16 8 C -0.11 -1.60 5.38 -26.65 -0.14 -1.75 16 9 C 0.07 1.25 5.27 -3.83 -0.02 1.23 16 10 N -0.53 -11.21 3.78 -228.08 -0.86 -12.07 16 11 C 0.22 5.44 1.76 -68.86 -0.12 5.32 16 12 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 13 C -0.49 -13.20 6.64 -34.44 -0.23 -13.43 16 14 H 0.06 1.63 6.80 -52.49 -0.36 1.27 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 16 N -0.89 -25.40 11.30 55.43 0.63 -24.77 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.11 -2.75 4.95 -26.73 -0.13 -2.88 16 22 C -0.12 -2.68 9.42 37.16 0.35 -2.33 16 23 C 0.05 1.03 4.83 -3.83 -0.02 1.01 16 24 C -0.11 -1.81 5.09 -26.65 -0.14 -1.94 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 1.76 6.39 -51.93 -0.33 1.43 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.01 0.32 6.36 -51.93 -0.33 -0.01 16 39 H 0.09 2.49 6.01 -51.93 -0.31 2.17 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 1.43 7.14 -51.93 -0.37 1.06 16 42 H 0.04 0.85 7.18 -51.93 -0.37 0.48 16 43 H 0.07 1.46 5.59 -51.93 -0.29 1.17 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 1.13 6.05 -51.93 -0.31 0.81 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -29.58 351.65 -8.73 -38.31 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.14 Total: -0.93 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 0.03 Total: -9.54 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.23 Total: -36.84 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.66 Total: -12.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.58 -8.73 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.814 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds