Wall clock time and date at job start Tue Mar 31 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.46999 * 2 1 4 4 C 1.34235 * 117.00179 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99906 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.50158 * 299.91663 * 6 4 3 8 8 C 1.53113 * 109.50642 * 60.00209 * 6 4 3 9 9 C 1.53120 * 109.16144 * 177.63580 * 8 6 4 10 10 C 1.53037 * 109.27442 * 302.34301 * 9 8 6 11 11 N 1.46846 * 109.51789 * 59.18625 * 10 9 8 12 12 C 1.46896 * 111.00075 * 174.15250 * 11 10 9 13 13 H 1.09000 * 109.46803 * 161.46833 * 12 11 10 14 14 C 1.50698 * 109.47107 * 281.46513 * 12 11 10 15 15 H 1.07990 * 120.00248 * 0.02562 * 14 12 11 16 16 C 1.37876 * 119.99740 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00207 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99929 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47314 * 120.00036 * 18 16 14 21 21 H 1.48501 * 109.46953 * 239.99698 * 18 16 14 22 22 C 1.53002 * 109.47055 * 41.46887 * 12 11 10 23 23 C 1.52996 * 109.47400 * 65.53027 * 22 12 11 24 24 C 1.46846 * 111.19510 * 298.24328 * 11 10 9 25 25 H 1.09004 * 109.47192 * 301.73473 * 24 11 10 26 26 C 1.53004 * 109.45229 * 181.76353 * 24 11 10 27 27 H 1.08997 * 109.47327 * 59.99824 * 1 2 3 28 28 H 1.09006 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47257 * 300.00182 * 1 2 3 30 30 H 1.08993 * 109.47208 * 239.99892 * 2 1 3 31 31 H 1.08999 * 109.47062 * 119.99704 * 2 1 3 32 32 H 1.08995 * 109.52612 * 57.72551 * 8 6 4 33 33 H 1.09001 * 109.57301 * 297.56946 * 8 6 4 34 34 H 1.09004 * 109.50097 * 182.40177 * 9 8 6 35 35 H 1.08993 * 109.53449 * 62.30186 * 9 8 6 36 36 H 1.08996 * 109.45904 * 179.19726 * 10 9 8 37 37 H 1.09002 * 109.46357 * 299.17548 * 10 9 8 38 38 H 0.96995 * 119.99923 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46618 * 185.52908 * 22 12 11 40 40 H 1.08994 * 109.47127 * 305.53060 * 22 12 11 41 41 H 1.09002 * 109.47263 * 280.98949 * 23 22 12 42 42 H 1.09004 * 109.47081 * 40.98257 * 23 22 12 43 43 H 1.08992 * 109.47173 * 160.98404 * 23 22 12 44 44 H 1.09003 * 109.46795 * 307.08252 * 26 24 11 45 45 H 1.08998 * 109.47341 * 67.08576 * 26 24 11 46 46 H 1.09004 * 109.46750 * 187.08909 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5864 3.4699 -0.8894 8 6 3.4487 3.6854 1.2511 9 6 4.0852 5.0778 1.2740 10 6 5.6088 4.9374 1.2420 11 7 6.0097 4.2162 0.0273 12 6 7.4721 4.1836 -0.1071 13 1 7.7556 3.3919 -0.8006 14 6 7.9579 5.5097 -0.6330 15 1 7.2511 6.2980 -0.8456 16 6 9.3049 5.7164 -0.8426 17 7 10.1658 4.7566 -0.5831 18 14 9.9072 7.3604 -1.4937 19 1 8.7481 8.2648 -1.7028 20 1 10.8403 7.9698 -0.5123 21 1 10.6121 7.1534 -2.7843 22 6 8.1040 3.9146 1.2601 23 6 7.7210 2.5104 1.7316 24 6 5.4490 2.8592 0.0061 25 1 5.7819 2.3146 0.8897 26 6 5.9262 2.1303 -1.2517 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7491 3.1329 2.1413 33 1 2.3631 3.7814 1.2311 34 1 3.7868 5.5995 2.1833 35 1 3.7537 5.6444 0.4039 36 1 6.0648 5.9274 1.2438 37 1 5.9409 4.3830 2.1198 38 1 11.1133 4.9020 -0.7310 39 1 9.1887 3.9876 1.1797 40 1 7.7426 4.6502 1.9785 41 1 6.7073 2.5254 2.1320 42 1 7.7690 1.8189 0.8903 43 1 8.4137 2.1864 2.5083 44 1 5.7042 2.7371 -2.1295 45 1 7.0013 1.9624 -1.1884 46 1 5.4129 1.1721 -1.3331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:39 Heat of formation + Delta-G solvation = -84.800411 kcal Electronic energy + Delta-G solvation = -24422.108535 eV Core-core repulsion = 21118.878536 eV Total energy + Delta-G solvation = -3303.229999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72307 -38.87779 -36.56063 -34.79421 -32.31018 -32.03231 -31.59065 -30.23878 -27.52418 -26.42134 -24.44946 -23.49835 -22.80066 -21.35340 -20.78746 -19.62212 -18.76919 -17.41609 -16.51524 -16.44734 -16.07008 -15.03931 -14.62700 -14.42016 -14.18108 -13.88247 -13.79624 -13.53376 -12.95290 -12.80916 -12.54902 -12.21867 -12.04468 -12.02207 -11.67914 -11.60011 -11.38725 -11.23042 -11.12352 -10.80362 -10.77320 -10.69434 -10.54972 -10.44315 -10.33934 -10.14305 -10.04512 -9.70365 -9.56805 -9.30568 -8.81840 -8.24971 -6.99873 -5.95526 -3.98311 2.36084 2.72007 3.32816 3.41084 3.45611 4.44770 4.67476 4.76178 4.84354 4.92072 5.02032 5.10760 5.21609 5.31731 5.36018 5.57581 5.58995 5.60789 5.75342 5.77646 5.88180 6.04855 6.08664 6.15831 6.20215 6.21372 6.26428 6.27397 6.41652 6.48615 6.63376 6.66443 6.71988 6.79172 6.87116 7.01673 7.09038 7.31899 7.55703 7.77358 7.89615 7.93709 8.26785 8.45978 8.65165 9.08843 9.66061 11.10807 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.004447 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.435276 B = 6294.567046 C = 6492.594502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.360 6.360 4 C 0.467 3.533 5 O -0.501 6.501 6 C -0.072 4.072 7 H 0.112 0.888 8 C -0.107 4.107 9 C -0.116 4.116 10 C 0.057 3.943 11 N -0.522 5.522 12 C 0.212 3.788 13 H 0.050 0.950 14 C -0.492 4.492 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.286 1.286 22 C -0.154 4.154 23 C -0.152 4.152 24 C 0.084 3.916 25 H 0.060 0.940 26 C -0.154 4.154 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.258 0.742 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.032 0.968 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.015 -6.058 3.284 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.310 3.690 5 O -0.388 6.388 6 C -0.092 4.092 7 H 0.130 0.870 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.072 4.072 11 N -0.247 5.247 12 C 0.106 3.894 13 H 0.068 0.932 14 C -0.531 4.531 15 H 0.080 0.920 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.193 4.193 23 C -0.209 4.209 24 C -0.025 4.025 25 H 0.077 0.923 26 C -0.211 4.211 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.806 -6.155 2.861 17.202 hybrid contribution 0.800 0.182 0.356 0.894 sum -15.006 -5.973 3.217 16.469 Atomic orbital electron populations 1.21792 0.92854 1.02729 1.03468 1.22966 0.95187 0.80851 1.02452 1.86530 1.25143 1.31795 1.84257 1.24013 0.80063 0.93112 0.71800 1.90615 1.59996 1.43370 1.44850 1.21235 0.97570 0.88393 1.02009 0.87018 1.21525 1.00315 0.96909 0.95700 1.21646 0.96687 0.95312 1.01772 1.22041 0.93185 0.99942 0.92011 1.62244 1.14209 1.12246 1.35979 1.19505 0.79307 0.98028 0.92532 0.93210 1.21183 0.91587 0.98719 1.41577 0.91966 1.24927 0.96867 0.96725 0.95924 1.69889 1.02134 1.32105 1.49324 0.86505 0.78667 0.84164 0.78435 1.19789 1.21320 1.21227 1.22275 1.05691 0.92430 0.98917 1.22138 0.98678 1.00106 0.99935 1.21658 0.89347 0.92037 0.99437 0.92275 1.22109 1.02205 0.99727 0.97103 0.91498 0.90475 0.91555 0.91376 0.91458 0.92252 0.91243 0.91938 0.91095 0.90115 0.95239 0.93170 0.88385 0.94235 0.94357 0.93307 0.94893 0.92522 0.91666 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.15 0.38 -0.74 16 2 C 0.06 0.62 6.19 37.15 0.23 0.85 16 3 O -0.36 -4.76 10.15 -39.27 -0.40 -5.16 16 4 C 0.47 7.18 6.92 36.01 0.25 7.43 16 5 O -0.50 -8.84 13.50 -18.75 -0.25 -9.10 16 6 C -0.07 -1.12 2.31 -91.69 -0.21 -1.34 16 7 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 8 C -0.11 -1.46 5.21 -26.61 -0.14 -1.60 16 9 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 10 C 0.06 1.04 4.08 -3.83 -0.02 1.02 16 11 N -0.52 -10.72 4.34 -220.14 -0.95 -11.67 16 12 C 0.21 5.12 1.72 -68.87 -0.12 5.00 16 13 H 0.05 1.33 5.21 -51.93 -0.27 1.06 16 14 C -0.49 -13.16 8.20 -34.44 -0.28 -13.44 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 17 N -0.89 -25.15 11.29 55.43 0.63 -24.52 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 C -0.15 -3.59 4.72 -26.73 -0.13 -3.71 16 23 C -0.15 -3.10 8.16 37.16 0.30 -2.80 16 24 C 0.08 1.55 0.97 -67.72 -0.07 1.49 16 25 H 0.06 1.17 4.19 -51.93 -0.22 0.95 16 26 C -0.15 -2.95 8.29 37.16 0.31 -2.64 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.61 7.60 -51.93 -0.39 1.22 16 37 H 0.03 0.55 5.35 -51.93 -0.28 0.27 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 40 H 0.04 0.90 6.10 -51.93 -0.32 0.58 16 41 H 0.04 0.73 5.07 -51.93 -0.26 0.47 16 42 H 0.05 1.02 6.77 -51.93 -0.35 0.67 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.06 1.36 5.64 -51.93 -0.29 1.06 16 46 H 0.06 1.18 5.47 -51.93 -0.28 0.90 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -28.66 339.73 -8.22 -36.88 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.60 Total: 3.14 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 0.26 Total: -10.89 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.33 Total: -36.20 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.65 Total: -14.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.66 -8.22 -36.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.919 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds