Wall clock time and date at job start Tue Mar 31 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.46999 * 2 1 4 4 C 1.34235 * 117.00179 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99782 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99906 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.50158 * 299.91663 * 6 4 3 8 8 C 1.53113 * 109.50642 * 60.00209 * 6 4 3 9 9 C 1.53120 * 109.16144 * 177.63580 * 8 6 4 10 10 C 1.53037 * 109.27442 * 302.34301 * 9 8 6 11 11 N 1.46846 * 109.51789 * 59.18625 * 10 9 8 12 12 C 1.46896 * 111.00075 * 174.15250 * 11 10 9 13 13 H 1.09000 * 109.46803 * 161.46833 * 12 11 10 14 14 C 1.50698 * 109.47107 * 281.46513 * 12 11 10 15 15 H 1.07990 * 120.00248 * 0.02562 * 14 12 11 16 16 C 1.37876 * 119.99740 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00207 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99929 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47233 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47314 * 120.00036 * 18 16 14 21 21 H 1.48501 * 109.46953 * 239.99698 * 18 16 14 22 22 C 1.53002 * 109.47055 * 41.46887 * 12 11 10 23 23 C 1.52996 * 109.47400 * 65.53027 * 22 12 11 24 24 C 1.46846 * 111.19510 * 298.24328 * 11 10 9 25 25 H 1.09004 * 109.47192 * 301.73473 * 24 11 10 26 26 C 1.53004 * 109.45229 * 181.76353 * 24 11 10 27 27 H 1.08997 * 109.47327 * 59.99824 * 1 2 3 28 28 H 1.09006 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47257 * 300.00182 * 1 2 3 30 30 H 1.08993 * 109.47208 * 239.99892 * 2 1 3 31 31 H 1.08999 * 109.47062 * 119.99704 * 2 1 3 32 32 H 1.08995 * 109.52612 * 57.72551 * 8 6 4 33 33 H 1.09001 * 109.57301 * 297.56946 * 8 6 4 34 34 H 1.09004 * 109.50097 * 182.40177 * 9 8 6 35 35 H 1.08993 * 109.53449 * 62.30186 * 9 8 6 36 36 H 1.08996 * 109.45904 * 179.19726 * 10 9 8 37 37 H 1.09002 * 109.46357 * 299.17548 * 10 9 8 38 38 H 0.96995 * 119.99923 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46618 * 185.52908 * 22 12 11 40 40 H 1.08994 * 109.47127 * 305.53060 * 22 12 11 41 41 H 1.09002 * 109.47263 * 280.98949 * 23 22 12 42 42 H 1.09004 * 109.47081 * 40.98257 * 23 22 12 43 43 H 1.08992 * 109.47173 * 160.98404 * 23 22 12 44 44 H 1.09003 * 109.46795 * 307.08252 * 26 24 11 45 45 H 1.08998 * 109.47341 * 67.08576 * 26 24 11 46 46 H 1.09004 * 109.46750 * 187.08909 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0012 7 1 3.5864 3.4699 -0.8894 8 6 3.4487 3.6854 1.2511 9 6 4.0852 5.0778 1.2740 10 6 5.6088 4.9374 1.2420 11 7 6.0097 4.2162 0.0273 12 6 7.4721 4.1836 -0.1071 13 1 7.7556 3.3919 -0.8006 14 6 7.9579 5.5097 -0.6330 15 1 7.2511 6.2980 -0.8456 16 6 9.3049 5.7164 -0.8426 17 7 10.1658 4.7566 -0.5831 18 14 9.9072 7.3604 -1.4937 19 1 8.7481 8.2648 -1.7028 20 1 10.8403 7.9698 -0.5123 21 1 10.6121 7.1534 -2.7843 22 6 8.1040 3.9146 1.2601 23 6 7.7210 2.5104 1.7316 24 6 5.4490 2.8592 0.0061 25 1 5.7819 2.3146 0.8897 26 6 5.9262 2.1303 -1.2517 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7491 3.1329 2.1413 33 1 2.3631 3.7814 1.2311 34 1 3.7868 5.5995 2.1833 35 1 3.7537 5.6444 0.4039 36 1 6.0648 5.9274 1.2438 37 1 5.9409 4.3830 2.1198 38 1 11.1133 4.9020 -0.7310 39 1 9.1887 3.9876 1.1797 40 1 7.7426 4.6502 1.9785 41 1 6.7073 2.5254 2.1320 42 1 7.7690 1.8189 0.8903 43 1 8.4137 2.1864 2.5083 44 1 5.7042 2.7371 -2.1295 45 1 7.0013 1.9624 -1.1884 46 1 5.4129 1.1721 -1.3331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:39 Heat of formation + Delta-G solvation = -100.834040 kcal Electronic energy + Delta-G solvation = -24422.803806 eV Core-core repulsion = 21118.878536 eV Total energy + Delta-G solvation = -3303.925269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96795 -40.31985 -37.73377 -36.36719 -34.11560 -33.38544 -32.62260 -31.82296 -29.20809 -28.05727 -25.78370 -25.11443 -23.99838 -22.68299 -22.10652 -21.14548 -20.31238 -18.64206 -18.30109 -17.53853 -17.52276 -16.69458 -16.11739 -16.04086 -15.48341 -15.37835 -15.14334 -14.67793 -14.36386 -14.15570 -13.70237 -13.56305 -13.44741 -13.17168 -13.05516 -13.01742 -12.94641 -12.67718 -12.58143 -12.51243 -12.44111 -12.21945 -12.10099 -11.97491 -11.73155 -11.63293 -11.46719 -11.31226 -11.05971 -10.89570 -10.75232 -10.29701 -8.67292 -8.03630 -6.13140 1.16562 1.42763 1.45321 1.56414 1.65355 2.47074 3.24039 3.38160 3.58512 3.80589 3.90938 4.03773 4.11717 4.19284 4.27392 4.35874 4.39302 4.44009 4.49773 4.55605 4.62633 4.68839 4.79626 4.82762 4.90468 4.92741 4.95810 5.06084 5.06912 5.10357 5.17018 5.19902 5.23875 5.31671 5.34250 5.40940 5.50244 5.58553 5.68309 5.82374 5.89695 6.36347 6.63750 6.73363 6.84603 7.01405 7.55270 9.01325 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.004447 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.435276 B = 6294.567046 C = 6492.594502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.474 3.526 5 O -0.530 6.530 6 C -0.070 4.070 7 H 0.119 0.881 8 C -0.100 4.100 9 C -0.107 4.107 10 C 0.055 3.945 11 N -0.528 5.528 12 C 0.217 3.783 13 H 0.020 0.980 14 C -0.504 4.504 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.921 5.921 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.145 4.145 23 C -0.138 4.138 24 C 0.086 3.914 25 H 0.049 0.951 26 C -0.146 4.146 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.026 0.974 38 H 0.258 0.742 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.038 0.962 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 -5.714 3.951 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.318 3.682 5 O -0.419 6.419 6 C -0.089 4.089 7 H 0.137 0.863 8 C -0.137 4.137 9 C -0.144 4.144 10 C -0.073 4.073 11 N -0.252 5.252 12 C 0.110 3.890 13 H 0.038 0.962 14 C -0.543 4.543 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.212 1.212 22 C -0.185 4.185 23 C -0.195 4.195 24 C -0.022 4.022 25 H 0.067 0.933 26 C -0.203 4.203 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.439 -5.804 3.533 19.651 hybrid contribution 1.563 0.019 0.137 1.569 sum -16.875 -5.786 3.670 18.213 Atomic orbital electron populations 1.21812 0.90173 1.04324 1.03813 1.23300 0.97235 0.79376 1.02403 1.86513 1.23532 1.33571 1.83594 1.23850 0.80714 0.92510 0.71112 1.90609 1.60831 1.44144 1.46354 1.21130 0.95017 0.89217 1.03565 0.86347 1.21527 1.01949 0.95794 0.94466 1.21590 0.93223 0.96288 1.03331 1.22091 0.96214 0.98302 0.90736 1.62157 1.11880 1.13675 1.37481 1.19223 0.81866 0.95813 0.92076 0.96238 1.21452 0.91731 0.99557 1.41569 0.92751 1.25645 0.97117 0.99790 0.96286 1.70027 1.02214 1.33758 1.50165 0.85553 0.78133 0.80492 0.77693 1.19179 1.20952 1.21162 1.22086 1.03345 0.94271 0.98770 1.21980 0.99893 0.97887 0.99770 1.21593 0.91732 0.90531 0.98353 0.93300 1.22014 1.00534 1.00222 0.97519 0.91251 0.88267 0.91066 0.91618 0.91468 0.92156 0.88272 0.89119 0.90893 0.92198 0.95584 0.93288 0.91710 0.94053 0.92774 0.94491 0.93576 0.92987 0.94300 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.95 6.19 71.98 0.45 1.39 16 3 O -0.36 -8.51 10.15 -51.47 -0.52 -9.03 16 4 C 0.47 13.75 6.92 71.24 0.49 14.25 16 5 O -0.53 -18.24 13.50 21.96 0.30 -17.95 16 6 C -0.07 -2.03 2.31 -11.49 -0.03 -2.06 16 7 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 8 C -0.10 -2.41 5.21 30.67 0.16 -2.25 16 9 C -0.11 -2.79 6.09 30.65 0.19 -2.60 16 10 C 0.05 1.96 4.08 86.33 0.35 2.31 16 11 N -0.53 -21.76 4.34 -850.40 -3.69 -25.45 16 12 C 0.22 10.82 1.72 44.17 0.08 10.90 16 13 H 0.02 1.10 5.21 -2.39 -0.01 1.09 16 14 C -0.50 -27.63 8.20 25.60 0.21 -27.42 16 15 H 0.05 2.99 7.81 -2.92 -0.02 2.97 16 16 C 0.01 0.52 5.29 84.65 0.45 0.97 16 17 N -0.92 -53.31 11.29 21.45 0.24 -53.07 16 18 Si 0.95 44.14 29.54 68.60 2.03 46.16 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 C -0.15 -6.95 4.72 30.59 0.14 -6.81 16 23 C -0.14 -5.70 8.16 71.98 0.59 -5.11 16 24 C 0.09 3.18 0.97 44.94 0.04 3.22 16 25 H 0.05 1.92 4.19 -2.38 -0.01 1.91 16 26 C -0.15 -5.71 8.29 71.98 0.60 -5.11 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.07 1.27 8.13 -2.39 -0.02 1.26 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.38 7.60 -2.39 -0.02 2.36 16 37 H 0.03 0.95 5.35 -2.39 -0.01 0.94 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.06 3.56 5.94 -2.38 -0.01 3.54 16 40 H 0.04 1.92 6.10 -2.39 -0.01 1.90 16 41 H 0.05 2.04 5.07 -2.39 -0.01 2.03 16 42 H 0.04 1.58 6.77 -2.39 -0.02 1.57 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.70 5.64 -2.39 -0.01 1.68 16 46 H 0.07 2.70 5.47 -2.38 -0.01 2.68 16 Total: -1.00 -63.08 339.73 3.77 -59.31 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.96 Total: 19.31 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.46 Total: -19.29 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -3.45 Total: -78.51 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.23 Total: -26.98 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.08 3.77 -59.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.524 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds