Wall clock time and date at job start Tue Mar 31 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47001 * 2 1 4 4 H 1.08999 * 109.46625 * 180.76641 * 3 2 1 5 5 C 1.50697 * 109.47327 * 300.76264 * 3 2 1 6 6 H 1.08000 * 120.00247 * 120.00239 * 5 3 2 7 7 C 1.37878 * 120.00086 * 300.00504 * 5 3 2 8 8 N 1.31519 * 119.99897 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00106 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47139 * 119.99956 * 9 7 5 12 12 H 1.48506 * 109.46758 * 239.99574 * 9 7 5 13 13 N 1.46901 * 109.47397 * 60.76496 * 3 2 1 14 14 C 1.46903 * 111.00066 * 62.87584 * 13 3 2 15 15 C 1.52991 * 109.47325 * 229.97149 * 14 13 3 16 16 C 1.50700 * 109.47231 * 185.62380 * 15 14 13 17 17 O 1.20825 * 120.00102 * 359.97438 * 16 15 14 18 18 O 1.34228 * 120.00136 * 180.02562 * 16 15 14 19 19 C 1.45204 * 117.00128 * 180.02562 * 18 16 15 20 20 C 1.46898 * 110.99806 * 186.83259 * 13 3 2 21 21 C 1.54893 * 110.75114 * 176.30238 * 20 13 3 22 22 C 1.54273 * 104.31149 * 156.32474 * 21 20 13 23 23 C 1.53880 * 106.59489 * 336.32151 * 22 21 20 24 24 C 1.54264 * 106.59963 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.47120 * 185.01721 * 1 2 3 26 26 H 1.08997 * 109.46944 * 305.02085 * 1 2 3 27 27 H 1.08997 * 109.47183 * 65.01647 * 1 2 3 28 28 H 1.08996 * 109.47140 * 239.99806 * 2 1 3 29 29 H 1.09005 * 109.46645 * 119.99793 * 2 1 3 30 30 H 0.97003 * 120.00075 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.46996 * 349.97195 * 14 13 3 32 32 H 1.09004 * 109.46760 * 109.96881 * 14 13 3 33 33 H 1.09005 * 109.46837 * 305.62044 * 15 14 13 34 34 H 1.09000 * 109.47542 * 65.61816 * 15 14 13 35 35 H 1.09000 * 109.47135 * 180.02562 * 19 18 16 36 36 H 1.09009 * 109.46548 * 299.99317 * 19 18 16 37 37 H 1.08998 * 109.47225 * 59.99405 * 19 18 16 38 38 H 1.08999 * 110.81937 * 52.96671 * 20 13 3 39 39 H 1.08997 * 110.48696 * 37.57964 * 21 20 13 40 40 H 1.09000 * 110.48987 * 275.06390 * 21 20 13 41 41 H 1.08998 * 110.03147 * 95.60440 * 22 21 20 42 42 H 1.08997 * 110.03032 * 217.03977 * 22 21 20 43 43 H 1.08995 * 110.02702 * 119.28711 * 23 22 21 44 44 H 1.09001 * 110.02589 * 240.66849 * 23 22 21 45 45 H 1.09000 * 110.48156 * 142.28758 * 24 23 22 46 46 H 1.08995 * 110.48759 * 264.79700 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0137 5 6 1.5223 2.1584 -1.2209 6 1 0.9028 3.0360 -1.1101 7 6 1.8396 1.6929 -2.4793 8 7 2.5944 0.6243 -2.6142 9 14 1.1973 2.5798 -3.9926 10 1 0.3767 3.7440 -3.5730 11 1 2.3417 3.0504 -4.8136 12 1 0.3624 1.6495 -4.7945 13 7 1.5655 2.1297 1.2086 14 6 2.1072 1.4991 2.4197 15 6 0.9689 1.2239 3.4042 16 6 1.5391 0.7053 4.6992 17 8 2.7333 0.5693 4.8220 18 8 0.7201 0.3935 5.7159 19 6 1.3389 -0.0997 6.9334 20 6 1.8982 3.5599 1.1658 21 6 1.3152 4.2960 2.3977 22 6 2.2044 5.5475 2.5501 23 6 3.5465 5.2182 1.8731 24 6 3.4258 3.7785 1.3324 25 1 -0.3633 -1.0237 0.0899 26 1 -0.3633 0.5897 0.8416 27 1 -0.3633 0.4340 -0.9315 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.8180 0.2970 -3.4996 31 1 2.5930 0.5600 2.1542 32 1 2.8345 2.1663 2.8824 33 1 0.4204 2.1469 3.5925 34 1 0.2940 0.4801 2.9806 35 1 0.5668 -0.3135 7.6725 36 1 1.8946 -1.0116 6.7148 37 1 2.0197 0.6553 7.3266 38 1 1.5419 4.0130 0.2407 39 1 1.3851 3.6679 3.2857 40 1 0.2798 4.5837 2.2155 41 1 1.7369 6.3999 2.0573 42 1 2.3627 5.7666 3.6060 43 1 3.7302 5.9109 1.0519 44 1 4.3561 5.2784 2.6004 45 1 3.9312 3.6886 0.3708 46 1 3.8384 3.0666 2.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:58 Heat of formation + Delta-G solvation = -90.959110 kcal Electronic energy + Delta-G solvation = -24291.985768 eV Core-core repulsion = 20988.488708 eV Total energy + Delta-G solvation = -3303.497060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35327 -38.84546 -36.41832 -35.56969 -33.13306 -31.15496 -30.56059 -28.23638 -27.80326 -26.67932 -25.84176 -23.21416 -23.01060 -20.56711 -19.96074 -19.42858 -18.42301 -17.30198 -16.77147 -16.36847 -16.12444 -15.69106 -14.85316 -14.69232 -14.12172 -13.58766 -13.49198 -13.42180 -12.93500 -12.66773 -12.49765 -12.26777 -12.16505 -11.90337 -11.72112 -11.14979 -11.01373 -10.90664 -10.78866 -10.76299 -10.74599 -10.59581 -10.46599 -10.43628 -10.26778 -10.03556 -9.88758 -9.66939 -9.51317 -9.32863 -8.76527 -8.39153 -7.12230 -5.99521 -4.02616 2.38405 2.83751 3.29580 3.38461 3.41603 4.41296 4.78410 5.04579 5.05232 5.11429 5.13711 5.15576 5.32384 5.35839 5.43799 5.44933 5.74242 5.77856 5.93719 6.01028 6.06590 6.09182 6.15075 6.23518 6.30448 6.32337 6.43084 6.49136 6.50821 6.54966 6.65986 6.68431 6.79385 6.87419 7.03063 7.17703 7.36723 7.47453 7.67977 7.77208 7.84798 7.90654 8.19467 8.36257 8.60853 9.02923 9.61258 11.07035 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016373 B = 0.005763 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.672062 B = 4857.551092 C = 5988.040040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.496 4.496 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.522 5.522 14 C 0.053 3.947 15 C -0.107 4.107 16 C 0.460 3.540 17 O -0.511 6.511 18 O -0.364 6.364 19 C 0.035 3.965 20 C 0.095 3.905 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.159 4.159 25 H 0.013 0.987 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 3.094 13.544 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.145 4.145 16 C 0.303 3.697 17 O -0.399 6.399 18 O -0.281 6.281 19 C -0.059 4.059 20 C -0.014 4.014 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.198 4.198 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.804 2.868 13.454 14.039 hybrid contribution 0.757 0.339 -0.717 1.096 sum -2.047 3.207 12.738 13.294 Atomic orbital electron populations 1.21473 0.97317 0.97170 1.01841 1.21597 0.95228 0.98263 0.99916 1.19275 0.93194 0.90779 0.85375 0.98067 1.21110 1.30961 1.11774 0.89602 0.91860 1.24878 0.95256 0.95047 0.98803 1.69894 1.37297 1.23035 1.22798 0.86570 0.78606 0.79761 0.83258 1.19774 1.21300 1.21155 1.61964 1.58917 1.01286 1.02227 1.21973 0.93547 1.00345 0.91703 1.21645 1.01386 1.03394 0.88100 1.24291 0.85592 0.74030 0.85751 1.90647 1.17038 1.49839 1.82366 1.86542 1.41593 1.76226 1.23727 1.23196 0.99210 0.99411 0.84095 1.22745 0.91455 0.89159 0.98081 1.22582 0.98832 0.95988 0.98935 1.22096 0.96065 0.98229 0.99634 1.22033 0.96827 0.97586 0.99346 1.23092 0.99947 0.95599 1.01137 0.96790 0.93452 0.92654 0.89149 0.96846 0.93130 0.91409 0.92342 0.87589 0.87381 0.88447 0.92085 0.92165 0.87922 0.91928 0.91802 0.92259 0.92749 0.92279 0.92895 0.91259 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.48 37.16 0.35 -2.19 16 2 C -0.11 -2.57 5.27 -26.73 -0.14 -2.71 16 3 C 0.22 5.14 1.38 -68.87 -0.09 5.04 16 4 H 0.00 0.05 7.72 -51.93 -0.40 -0.36 16 5 C -0.50 -12.58 6.65 -34.44 -0.23 -12.81 16 6 H 0.06 1.62 6.24 -52.49 -0.33 1.29 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.54 11.33 55.43 0.63 -23.92 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.52 -10.17 3.44 -217.53 -0.75 -10.92 16 14 C 0.05 0.95 3.09 -3.83 -0.01 0.93 16 15 C -0.11 -1.60 5.78 -27.89 -0.16 -1.76 16 16 C 0.46 7.01 7.96 36.01 0.29 7.29 16 17 O -0.51 -9.09 15.66 -18.75 -0.29 -9.38 16 18 O -0.36 -4.83 10.57 -39.25 -0.41 -5.24 16 19 C 0.03 0.35 10.56 101.05 1.07 1.41 16 20 C 0.09 1.72 2.67 -65.55 -0.18 1.55 16 21 C -0.13 -1.88 5.92 -25.07 -0.15 -2.02 16 22 C -0.12 -1.64 6.80 -25.61 -0.17 -1.82 16 23 C -0.12 -1.74 6.80 -25.61 -0.17 -1.92 16 24 C -0.16 -2.79 5.40 -24.90 -0.13 -2.93 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.93 6.87 -51.93 -0.36 0.57 16 27 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 28 H 0.09 2.36 6.09 -51.93 -0.32 2.04 16 29 H 0.01 0.28 6.35 -51.93 -0.33 -0.05 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.07 1.34 5.92 -51.92 -0.31 1.03 16 32 H 0.06 1.05 4.65 -51.93 -0.24 0.81 16 33 H 0.11 1.45 6.31 -51.93 -0.33 1.12 16 34 H 0.11 1.60 7.54 -51.93 -0.39 1.21 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.61 8.13 -51.92 -0.42 0.19 16 37 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.10 2.10 5.95 -51.93 -0.31 1.79 16 39 H 0.06 0.92 4.93 -51.93 -0.26 0.66 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.06 1.15 5.65 -51.93 -0.29 0.86 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -27.86 346.24 -8.07 -35.93 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.60 Total: 3.03 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 0.17 Total: -10.42 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.12 Total: -34.83 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.71 Total: -14.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.86 -8.07 -35.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.030 kcal (2) G-P(sol) polarization free energy of solvation -27.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds