Wall clock time and date at job start Tue Mar 31 2020 07:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46989 * 2 1 4 4 H 1.09011 * 109.46925 * 55.00261 * 3 2 1 5 5 C 1.50697 * 109.47068 * 175.00053 * 3 2 1 6 6 H 1.07996 * 119.99973 * 120.00252 * 5 3 2 7 7 C 1.37881 * 120.00202 * 299.99946 * 5 3 2 8 8 N 1.31513 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99948 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47297 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46800 * 120.00532 * 9 7 5 12 12 H 1.48501 * 109.46848 * 239.99958 * 9 7 5 13 13 N 1.46902 * 109.47290 * 295.00315 * 3 2 1 14 14 C 1.48558 * 110.99730 * 295.12363 * 13 3 2 15 15 C 1.54376 * 104.59179 * 200.95970 * 14 13 3 16 16 C 1.54256 * 105.06217 * 23.85505 * 15 14 13 17 17 H 1.08999 * 110.32425 * 240.99931 * 16 15 14 18 18 C 1.50706 * 110.32334 * 118.89720 * 16 15 14 19 19 O 1.20830 * 119.99594 * 242.82809 * 18 16 15 20 20 O 1.34222 * 120.00024 * 62.55093 * 18 16 15 21 21 C 1.45201 * 116.99867 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.47333 * 59.99856 * 21 20 18 23 23 C 1.52998 * 109.47142 * 180.02562 * 21 20 18 24 24 C 1.53008 * 109.47061 * 299.99860 * 21 20 18 25 25 C 1.48721 * 111.01466 * 179.61744 * 13 3 2 26 26 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47234 * 299.99623 * 1 2 3 28 28 H 1.08995 * 109.47457 * 60.00017 * 1 2 3 29 29 H 1.08999 * 109.46820 * 240.00042 * 2 1 3 30 30 H 1.08997 * 109.46985 * 120.00211 * 2 1 3 31 31 H 0.97003 * 120.00264 * 179.97438 * 8 7 5 32 32 H 1.09001 * 110.40742 * 82.18308 * 14 13 3 33 33 H 1.08997 * 110.51370 * 319.78927 * 14 13 3 34 34 H 1.09003 * 110.32717 * 264.95547 * 15 14 13 35 35 H 1.09005 * 110.40891 * 142.79673 * 15 14 13 36 36 H 1.09001 * 109.46674 * 60.00280 * 22 21 20 37 37 H 1.08993 * 109.46740 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47170 * 300.00284 * 22 21 20 39 39 H 1.08997 * 109.47571 * 60.00140 * 23 21 20 40 40 H 1.09004 * 109.46957 * 180.02562 * 23 21 20 41 41 H 1.09009 * 109.46963 * 299.99598 * 23 21 20 42 42 H 1.09002 * 109.46900 * 60.00047 * 24 21 20 43 43 H 1.09004 * 109.47130 * 179.97438 * 24 21 20 44 44 H 1.08993 * 109.46950 * 300.00229 * 24 21 20 45 45 H 1.09001 * 110.39375 * 40.23872 * 25 13 3 46 46 H 1.09007 * 110.50586 * 277.74731 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5987 1.5453 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4961 -0.5190 1.4626 13 7 1.6513 2.0993 -1.2552 14 6 2.3201 1.4622 -2.4187 15 6 2.2690 2.5320 -3.5305 16 6 2.1402 3.8773 -2.7867 17 1 1.2120 4.3764 -3.0648 18 6 3.3213 4.7611 -3.0952 19 8 4.0715 5.0978 -2.2098 20 8 3.5431 5.1696 -4.3544 21 6 4.6997 6.0185 -4.5779 22 6 5.9682 5.2731 -4.1581 23 6 4.7876 6.3802 -6.0619 24 6 4.5616 7.2972 -3.7491 25 6 2.1229 3.5094 -1.2876 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8294 -0.0619 2.9495 32 1 1.7778 0.5681 -2.7262 33 1 3.3536 1.2146 -2.1767 34 1 1.4030 2.3699 -4.1724 35 1 3.1855 2.5116 -4.1201 36 1 6.0665 4.3622 -4.7486 37 1 6.8364 5.9102 -4.3264 38 1 5.9053 5.0157 -3.1008 39 1 3.8839 6.9115 -6.3606 40 1 5.6561 7.0171 -6.2298 41 1 4.8858 5.4694 -6.6527 42 1 4.4987 7.0398 -2.6918 43 1 5.4301 7.9343 -3.9166 44 1 3.6580 7.8282 -4.0482 45 1 3.1254 3.5844 -0.8661 46 1 1.4324 4.1555 -0.7455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:53 Heat of formation + Delta-G solvation = -92.345072 kcal Electronic energy + Delta-G solvation = -24155.460122 eV Core-core repulsion = 20851.902962 eV Total energy + Delta-G solvation = -3303.557160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78263 -38.40383 -36.65380 -34.37101 -33.82845 -31.66240 -29.93628 -28.41107 -27.49157 -27.42710 -26.27550 -23.78608 -22.63046 -21.25770 -20.35345 -19.27106 -18.82081 -16.95949 -16.58705 -16.38553 -15.75024 -15.21080 -14.76344 -14.27042 -14.13860 -13.76087 -13.36651 -13.28341 -12.94751 -12.58999 -12.37584 -12.29314 -12.20833 -11.94820 -11.92728 -11.60895 -11.51931 -11.29568 -11.10916 -10.95762 -10.88935 -10.80557 -10.64003 -10.51884 -10.32429 -10.22852 -9.92713 -9.67166 -9.63236 -9.45521 -9.07165 -8.34145 -7.24987 -5.97971 -4.09723 2.50219 2.81602 3.27927 3.36581 3.41630 4.42400 4.64985 4.68804 4.74117 4.85031 5.04684 5.16904 5.27112 5.35148 5.36785 5.45196 5.51445 5.58973 5.65706 5.78729 5.82334 5.88722 5.95503 6.04015 6.18945 6.20767 6.30399 6.34299 6.47591 6.53757 6.59128 6.67441 6.69529 6.83535 6.91375 7.07030 7.18291 7.29007 7.59013 7.75603 7.93497 8.09210 8.13967 8.19057 8.43524 8.99258 9.57161 11.02087 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.005445 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.668862 B = 5141.521667 C = 6204.859903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.202 3.798 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.507 5.507 14 C 0.033 3.967 15 C -0.110 4.110 16 C -0.088 4.088 17 H 0.106 0.894 18 C 0.469 3.531 19 O -0.495 6.495 20 O -0.353 6.353 21 C 0.115 3.885 22 C -0.184 4.184 23 C -0.139 4.139 24 C -0.182 4.182 25 C 0.046 3.954 26 H 0.025 0.975 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 8.973 -13.943 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.096 3.904 4 H 0.058 0.942 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.231 5.231 14 C -0.095 4.095 15 C -0.148 4.148 16 C -0.108 4.108 17 H 0.124 0.876 18 C 0.312 3.688 19 O -0.381 6.381 20 O -0.271 6.271 21 C 0.079 3.921 22 C -0.241 4.241 23 C -0.196 4.196 24 C -0.240 4.240 25 C -0.083 4.083 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.532 8.956 -13.525 16.230 hybrid contribution 2.105 0.128 0.280 2.127 sum 1.572 9.084 -13.245 16.138 Atomic orbital electron populations 1.21719 0.98839 0.98437 1.00611 1.21556 0.92242 0.98945 1.02005 1.19406 0.93332 0.91387 0.86324 0.94176 1.21730 0.92692 1.37951 1.05595 0.92219 1.24879 0.97744 0.95001 0.95651 1.69883 1.34666 1.38333 1.09425 0.86650 0.86363 0.77593 0.78127 1.19882 1.20992 1.21038 1.65830 1.51995 1.00543 1.04694 1.23031 0.99844 0.96176 0.90485 1.22289 1.01855 0.92616 0.98054 1.21900 0.94054 0.95026 0.99777 0.87635 1.23771 0.86501 0.78399 0.80131 1.90585 1.46440 1.53652 1.47445 1.86557 1.46900 1.62367 1.31295 1.22117 0.84135 0.89585 0.96277 1.22496 0.96260 1.00652 1.04723 1.21831 1.02651 1.02236 0.92871 1.22484 1.02308 0.96321 1.02849 1.23018 1.02360 0.92327 0.90574 0.95593 0.94181 0.93375 0.95007 0.88925 0.92974 0.91186 0.91917 0.90732 0.91820 0.92060 0.91366 0.89492 0.91618 0.90640 0.91556 0.89632 0.91332 0.92158 0.90045 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.56 5.18 -26.73 -0.14 -2.70 16 3 C 0.20 4.95 1.83 -68.87 -0.13 4.83 16 4 H 0.04 1.10 8.14 -51.92 -0.42 0.68 16 5 C -0.54 -14.43 6.51 -34.44 -0.22 -14.66 16 6 H 0.06 1.63 5.69 -52.49 -0.30 1.33 16 7 C 0.07 1.91 5.29 -17.82 -0.09 1.81 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.88 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.56 4.85 -223.27 -1.08 -11.64 16 14 C 0.03 0.63 5.31 -2.19 -0.01 0.62 16 15 C -0.11 -1.71 6.63 -25.35 -0.17 -1.88 16 16 C -0.09 -1.41 3.55 -90.39 -0.32 -1.73 16 17 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 18 C 0.47 7.76 6.35 36.01 0.23 7.99 16 19 O -0.49 -9.42 10.94 -18.75 -0.21 -9.62 16 20 O -0.35 -5.13 9.87 -39.24 -0.39 -5.51 16 21 C 0.11 1.42 1.13 -90.61 -0.10 1.32 16 22 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 23 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 24 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 25 C 0.05 0.90 5.64 -2.10 -0.01 0.89 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.93 7.75 -51.93 -0.40 0.52 16 29 H 0.03 0.73 6.84 -51.93 -0.36 0.37 16 30 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.06 1.36 5.87 -51.93 -0.31 1.05 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.08 1.24 5.90 -51.93 -0.31 0.93 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.88 5.04 -51.93 -0.26 1.62 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -28.56 349.00 -8.43 -37.00 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.97 Total: 3.09 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 0.35 Total: -10.80 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.46 Total: -35.90 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.59 Total: -15.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.56 -8.43 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.350 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds