Wall clock time and date at job start Tue Mar 31 2020 07:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45207 * 109.46908 * 2 1 4 4 C 1.34230 * 116.99615 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00412 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99745 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.03314 * 58.97776 * 6 4 3 8 8 C 1.53823 * 109.05041 * 300.00702 * 6 4 3 9 9 C 1.54168 * 111.96982 * 198.49086 * 8 6 4 10 10 C 1.50757 * 112.60900 * 318.48708 * 9 8 6 11 11 C 1.54428 * 109.03179 * 93.01756 * 10 9 8 12 12 N 1.39787 * 111.76880 * 282.59409 * 11 10 9 13 13 C 1.46893 * 111.00036 * 189.12459 * 12 11 10 14 14 H 1.09006 * 109.47164 * 295.69989 * 13 12 11 15 15 C 1.50697 * 109.47466 * 175.69653 * 13 12 11 16 16 H 1.08007 * 119.99662 * 0.02562 * 15 13 12 17 17 C 1.37870 * 120.00440 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99985 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99948 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47049 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47300 * 300.00115 * 19 17 15 22 22 H 1.48496 * 109.47506 * 60.00340 * 19 17 15 23 23 C 1.52999 * 109.47221 * 55.69548 * 13 12 11 24 24 C 1.53006 * 109.46952 * 56.99778 * 23 13 12 25 25 C 1.47633 * 114.75781 * 62.27147 * 12 11 10 26 26 H 1.09004 * 109.47158 * 299.99535 * 1 2 3 27 27 H 1.08993 * 109.47489 * 59.99702 * 1 2 3 28 28 H 1.09005 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47158 * 240.00464 * 2 1 3 30 30 H 1.08997 * 109.47258 * 119.99835 * 2 1 3 31 31 H 1.09000 * 108.98328 * 77.84622 * 8 6 4 32 32 H 1.08997 * 108.98267 * 319.12740 * 8 6 4 33 33 H 1.08998 * 108.85539 * 197.68042 * 9 8 6 34 34 H 1.08998 * 108.86010 * 79.28783 * 9 8 6 35 35 H 1.09002 * 109.54454 * 333.14856 * 10 9 8 36 36 H 1.09006 * 109.54422 * 212.88356 * 10 9 8 37 37 H 1.08997 * 109.02601 * 162.00584 * 11 10 9 38 38 H 1.09006 * 108.95890 * 43.13522 * 11 10 9 39 39 H 0.97003 * 119.99833 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47471 * 176.98946 * 23 13 12 41 41 H 1.08996 * 109.47609 * 296.99592 * 23 13 12 42 42 H 1.09000 * 109.47144 * 185.14956 * 24 23 13 43 43 H 1.08998 * 109.46721 * 305.13857 * 24 23 13 44 44 H 1.09000 * 109.47342 * 65.14174 * 24 23 13 45 45 H 1.09003 * 109.74606 * 36.83708 * 25 12 11 46 46 H 1.08994 * 109.74419 * 157.56473 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5653 3.4695 0.8826 8 6 3.4412 3.6786 -1.2598 9 6 4.3186 4.9063 -1.5757 10 6 4.6875 5.6883 -0.3407 11 6 6.0483 5.1838 0.1870 12 7 5.9216 3.9718 0.8719 13 6 7.1758 3.6162 1.5490 14 1 7.9541 3.4443 0.8054 15 6 6.9708 2.3631 2.3606 16 1 6.0054 1.8789 2.3718 17 6 8.0158 1.8340 3.0878 18 7 9.1915 2.4232 3.0737 19 14 7.7618 0.2802 4.0931 20 1 9.0297 -0.0792 4.7777 21 1 6.7017 0.5140 5.1065 22 1 7.3520 -0.8291 3.1950 23 6 7.5979 4.7595 2.4740 24 6 6.4740 5.0507 3.4705 25 6 5.4252 2.8480 0.0534 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4130 4.0072 -1.1081 32 1 3.4716 2.9938 -2.1072 33 1 3.7762 5.5607 -2.2581 34 1 5.2324 4.5697 -2.0654 35 1 3.9238 5.5444 0.4236 36 1 4.7623 6.7472 -0.5884 37 1 6.4670 5.9308 0.8613 38 1 6.7260 5.0464 -0.6556 39 1 9.9266 2.0512 3.5856 40 1 8.4993 4.4741 3.0164 41 1 7.7979 5.6518 1.8810 42 1 6.7360 5.9232 4.0690 43 1 5.5492 5.2469 2.9279 44 1 6.3359 4.1896 4.1244 45 1 5.8342 2.9177 -0.9546 46 1 5.7219 1.9025 0.5074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:50 Heat of formation + Delta-G solvation = -90.390258 kcal Electronic energy + Delta-G solvation = -24361.162554 eV Core-core repulsion = 21057.690162 eV Total energy + Delta-G solvation = -3303.472393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46194 -38.76254 -36.38741 -35.29314 -32.62611 -32.00533 -31.47039 -30.63772 -27.15935 -25.46894 -25.20866 -23.26277 -22.91504 -21.50224 -20.58381 -19.06653 -18.93992 -17.26852 -16.46593 -16.28551 -15.97999 -15.23111 -14.75319 -14.57101 -14.18291 -13.91280 -13.52578 -13.36116 -12.98423 -12.95369 -12.82159 -12.19099 -12.01488 -11.89657 -11.75803 -11.57585 -11.47651 -11.18031 -10.98447 -10.83586 -10.70663 -10.50303 -10.41549 -10.20051 -10.11241 -10.01695 -9.90562 -9.80597 -9.50356 -9.31481 -8.73956 -8.33669 -7.04726 -5.94829 -3.97543 2.57392 2.89330 3.38094 3.41100 3.46477 4.47629 4.77421 4.83611 4.89493 4.97325 5.03613 5.20796 5.25080 5.36476 5.41663 5.50135 5.57265 5.67815 5.71209 5.83024 5.88620 5.95243 6.00309 6.05303 6.26284 6.28932 6.38149 6.45811 6.53598 6.57393 6.65249 6.67917 6.72169 6.82118 6.99312 7.14858 7.39570 7.46869 7.70031 7.86284 7.93597 8.09014 8.25177 8.40913 8.80364 9.07149 9.66454 11.11367 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.006868 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.327811 B = 4075.825604 C = 5708.492016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.500 6.500 6 C -0.072 4.072 7 H 0.118 0.882 8 C -0.102 4.102 9 C -0.115 4.115 10 C -0.121 4.121 11 C 0.071 3.929 12 N -0.548 5.548 13 C 0.224 3.776 14 H -0.002 1.002 15 C -0.495 4.495 16 H 0.062 0.938 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.289 1.289 21 H -0.278 1.278 22 H -0.277 1.277 23 C -0.114 4.114 24 C -0.122 4.122 25 C 0.073 3.927 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.093 0.907 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 2.506 -7.466 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.386 6.386 6 C -0.092 4.092 7 H 0.136 0.864 8 C -0.140 4.140 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.060 4.060 12 N -0.272 5.272 13 C 0.119 3.881 14 H 0.016 0.984 15 C -0.533 4.533 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.152 4.152 24 C -0.179 4.179 25 C -0.055 4.055 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.657 2.243 -7.069 15.540 hybrid contribution 0.519 -1.187 -0.037 1.296 sum -13.138 1.056 -7.106 14.974 Atomic orbital electron populations 1.21783 0.92975 1.02636 1.03346 1.22954 0.95057 0.81037 1.02496 1.86520 1.25292 1.31645 1.84483 1.24081 0.80014 0.93345 0.71897 1.90674 1.60104 1.43130 1.44670 1.21106 0.98119 0.88398 1.01552 0.86408 1.21825 0.99615 0.96716 0.95850 1.21381 0.99623 0.95962 0.98309 1.21556 0.98822 0.98281 0.97252 1.21031 0.94653 0.93983 0.96301 1.58724 1.35154 1.01399 1.31920 1.19198 0.83473 0.93930 0.91522 0.98426 1.21041 0.96781 1.08028 1.27479 0.91995 1.24856 0.95170 0.97127 0.96784 1.69862 1.01505 1.39736 1.42168 0.86683 0.77167 0.83932 0.80428 1.21457 1.20345 1.20260 1.21633 1.00360 0.95280 0.97932 1.21477 0.98976 0.98685 0.98779 1.21729 0.89707 0.98016 0.96010 0.91516 0.91675 0.90566 0.91561 0.91311 0.91371 0.92466 0.92441 0.92230 0.90967 0.92211 0.90649 0.97752 0.93040 0.88843 0.96666 0.96653 0.93458 0.92735 0.95125 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.15 0.38 -0.94 16 2 C 0.06 0.72 6.19 37.15 0.23 0.95 16 3 O -0.36 -5.40 10.14 -39.26 -0.40 -5.79 16 4 C 0.46 8.09 7.11 36.01 0.26 8.34 16 5 O -0.50 -10.34 15.02 -18.75 -0.28 -10.62 16 6 C -0.07 -1.18 2.19 -92.44 -0.20 -1.39 16 7 H 0.12 1.97 7.26 -51.93 -0.38 1.59 16 8 C -0.10 -1.35 5.22 -25.69 -0.13 -1.49 16 9 C -0.12 -1.48 5.31 -27.24 -0.14 -1.62 16 10 C -0.12 -1.69 5.65 -27.11 -0.15 -1.84 16 11 C 0.07 1.24 4.44 -6.74 -0.03 1.21 16 12 N -0.55 -11.19 2.94 -233.38 -0.69 -11.88 16 13 C 0.22 5.49 1.81 -68.87 -0.12 5.37 16 14 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 15 C -0.49 -13.33 6.49 -34.44 -0.22 -13.55 16 16 H 0.06 1.71 6.72 -52.48 -0.35 1.36 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.34 11.30 55.43 0.63 -24.71 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.11 -2.66 4.95 -26.73 -0.13 -2.80 16 24 C -0.12 -2.61 9.36 37.16 0.35 -2.27 16 25 C 0.07 1.44 4.34 -4.52 -0.02 1.42 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 30 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.83 6.57 -51.93 -0.34 0.49 16 35 H 0.07 1.03 7.11 -51.93 -0.37 0.66 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.37 5.39 -51.93 -0.28 1.09 16 38 H 0.00 0.08 7.54 -51.93 -0.39 -0.31 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 40 H 0.09 2.47 6.00 -51.93 -0.31 2.16 16 41 H 0.01 0.32 6.34 -51.93 -0.33 -0.01 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 0.96 7.05 -51.93 -0.37 0.59 16 44 H 0.05 1.28 7.49 -51.93 -0.39 0.89 16 45 H 0.03 0.60 6.66 -51.93 -0.35 0.25 16 46 H 0.11 2.70 4.39 -51.93 -0.23 2.47 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -29.15 345.10 -8.46 -37.61 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.86 Total: 0.32 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.04 Total: -6.98 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.06 Total: -36.59 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.68 Total: -16.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.15 -8.46 -37.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.782 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds