Wall clock time and date at job start Tue Mar 31 2020 07:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45207 * 109.46908 * 2 1 4 4 C 1.34230 * 116.99615 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00412 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99745 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.03314 * 58.97776 * 6 4 3 8 8 C 1.53823 * 109.05041 * 300.00702 * 6 4 3 9 9 C 1.54168 * 111.96982 * 198.49086 * 8 6 4 10 10 C 1.50757 * 112.60900 * 318.48708 * 9 8 6 11 11 C 1.54428 * 109.03179 * 93.01756 * 10 9 8 12 12 N 1.39787 * 111.76880 * 282.59409 * 11 10 9 13 13 C 1.46893 * 111.00036 * 189.12459 * 12 11 10 14 14 H 1.09006 * 109.47164 * 295.69989 * 13 12 11 15 15 C 1.50697 * 109.47466 * 175.69653 * 13 12 11 16 16 H 1.08007 * 119.99662 * 0.02562 * 15 13 12 17 17 C 1.37870 * 120.00440 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99985 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99948 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47049 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47300 * 300.00115 * 19 17 15 22 22 H 1.48496 * 109.47506 * 60.00340 * 19 17 15 23 23 C 1.52999 * 109.47221 * 55.69548 * 13 12 11 24 24 C 1.53006 * 109.46952 * 56.99778 * 23 13 12 25 25 C 1.47633 * 114.75781 * 62.27147 * 12 11 10 26 26 H 1.09004 * 109.47158 * 299.99535 * 1 2 3 27 27 H 1.08993 * 109.47489 * 59.99702 * 1 2 3 28 28 H 1.09005 * 109.47360 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47158 * 240.00464 * 2 1 3 30 30 H 1.08997 * 109.47258 * 119.99835 * 2 1 3 31 31 H 1.09000 * 108.98328 * 77.84622 * 8 6 4 32 32 H 1.08997 * 108.98267 * 319.12740 * 8 6 4 33 33 H 1.08998 * 108.85539 * 197.68042 * 9 8 6 34 34 H 1.08998 * 108.86010 * 79.28783 * 9 8 6 35 35 H 1.09002 * 109.54454 * 333.14856 * 10 9 8 36 36 H 1.09006 * 109.54422 * 212.88356 * 10 9 8 37 37 H 1.08997 * 109.02601 * 162.00584 * 11 10 9 38 38 H 1.09006 * 108.95890 * 43.13522 * 11 10 9 39 39 H 0.97003 * 119.99833 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47471 * 176.98946 * 23 13 12 41 41 H 1.08996 * 109.47609 * 296.99592 * 23 13 12 42 42 H 1.09000 * 109.47144 * 185.14956 * 24 23 13 43 43 H 1.08998 * 109.46721 * 305.13857 * 24 23 13 44 44 H 1.09000 * 109.47342 * 65.14174 * 24 23 13 45 45 H 1.09003 * 109.74606 * 36.83708 * 25 12 11 46 46 H 1.08994 * 109.74419 * 157.56473 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5653 3.4695 0.8826 8 6 3.4412 3.6786 -1.2598 9 6 4.3186 4.9063 -1.5757 10 6 4.6875 5.6883 -0.3407 11 6 6.0483 5.1838 0.1870 12 7 5.9216 3.9718 0.8719 13 6 7.1758 3.6162 1.5490 14 1 7.9541 3.4443 0.8054 15 6 6.9708 2.3631 2.3606 16 1 6.0054 1.8789 2.3718 17 6 8.0158 1.8340 3.0878 18 7 9.1915 2.4232 3.0737 19 14 7.7618 0.2802 4.0931 20 1 9.0297 -0.0792 4.7777 21 1 6.7017 0.5140 5.1065 22 1 7.3520 -0.8291 3.1950 23 6 7.5979 4.7595 2.4740 24 6 6.4740 5.0507 3.4705 25 6 5.4252 2.8480 0.0534 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4130 4.0072 -1.1081 32 1 3.4716 2.9938 -2.1072 33 1 3.7762 5.5607 -2.2581 34 1 5.2324 4.5697 -2.0654 35 1 3.9238 5.5444 0.4236 36 1 4.7623 6.7472 -0.5884 37 1 6.4670 5.9308 0.8613 38 1 6.7260 5.0464 -0.6556 39 1 9.9266 2.0512 3.5856 40 1 8.4993 4.4741 3.0164 41 1 7.7979 5.6518 1.8810 42 1 6.7360 5.9232 4.0690 43 1 5.5492 5.2469 2.9279 44 1 6.3359 4.1896 4.1244 45 1 5.8342 2.9177 -0.9546 46 1 5.7219 1.9025 0.5074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:50 Heat of formation + Delta-G solvation = -106.043241 kcal Electronic energy + Delta-G solvation = -24361.841319 eV Core-core repulsion = 21057.690162 eV Total energy + Delta-G solvation = -3304.151157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83454 -40.24898 -37.73033 -36.86545 -34.41536 -33.35091 -32.65633 -32.24614 -28.90596 -27.03045 -26.67319 -24.80660 -24.22950 -22.86312 -21.95250 -20.72470 -20.31825 -18.64430 -18.13507 -17.72347 -17.60398 -16.82187 -16.22727 -16.16650 -15.57639 -15.45095 -14.79755 -14.72947 -14.61601 -14.21312 -13.92915 -13.79401 -13.60313 -13.10676 -12.94060 -12.92365 -12.85201 -12.79384 -12.63319 -12.47929 -12.42710 -12.06668 -11.85288 -11.74239 -11.57846 -11.52277 -11.36277 -11.25673 -11.12925 -10.96822 -10.72297 -10.43835 -8.78321 -8.08500 -6.16260 1.19542 1.37116 1.38725 1.46020 1.67678 2.41723 3.19152 3.35302 3.61541 3.82090 3.99978 4.06859 4.10171 4.16976 4.25190 4.31788 4.36648 4.47500 4.62184 4.70686 4.76529 4.77731 4.82447 4.87404 4.92529 4.93535 4.97234 5.10354 5.15166 5.19474 5.26313 5.31501 5.34900 5.38306 5.45291 5.53860 5.54872 5.60931 5.75018 5.84389 5.98815 6.35960 6.43094 6.76221 6.95566 7.06787 7.50555 8.96493 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.006868 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.327811 B = 4075.825604 C = 5708.492016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.467 3.533 5 O -0.542 6.542 6 C -0.065 4.065 7 H 0.120 0.880 8 C -0.095 4.095 9 C -0.113 4.113 10 C -0.110 4.110 11 C 0.063 3.937 12 N -0.540 5.540 13 C 0.228 3.772 14 H -0.047 1.047 15 C -0.498 4.498 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.271 1.271 22 H -0.284 1.284 23 C -0.108 4.108 24 C -0.109 4.109 25 C 0.078 3.922 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.072 0.928 38 H -0.007 1.007 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.039 0.961 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 3.811 -8.040 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.311 3.689 5 O -0.431 6.431 6 C -0.085 4.085 7 H 0.138 0.862 8 C -0.133 4.133 9 C -0.151 4.151 10 C -0.148 4.148 11 C -0.066 4.066 12 N -0.264 5.264 13 C 0.122 3.878 14 H -0.029 1.029 15 C -0.536 4.536 16 H 0.067 0.933 17 C -0.181 4.181 18 N -0.557 5.557 19 Si 0.768 3.232 20 H -0.206 1.206 21 H -0.196 1.196 22 H -0.210 1.210 23 C -0.146 4.146 24 C -0.166 4.166 25 C -0.050 4.050 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.011 0.989 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.498 3.565 -7.648 18.531 hybrid contribution 1.381 -1.624 0.085 2.134 sum -15.117 1.941 -7.563 17.015 Atomic orbital electron populations 1.21798 0.89707 1.04366 1.03943 1.23299 0.97549 0.79625 1.02074 1.86509 1.23535 1.33309 1.83724 1.24242 0.80656 0.93171 0.70804 1.90664 1.61233 1.44453 1.46795 1.20988 0.95305 0.88513 1.03695 0.86207 1.21841 1.00992 0.96596 0.93850 1.21380 0.99330 0.96090 0.98262 1.21498 0.95890 0.99817 0.97589 1.21202 0.97388 0.92399 0.95643 1.58754 1.32561 1.02492 1.32592 1.18981 0.84198 0.93851 0.90760 1.02934 1.21198 0.96108 1.08934 1.27391 0.93306 1.25489 0.95124 0.99563 0.97918 1.69982 1.01968 1.40803 1.42901 0.85873 0.77421 0.80752 0.79174 1.20622 1.19615 1.20987 1.21479 0.99787 0.95333 0.98018 1.21332 0.98657 0.98536 0.98061 1.21554 0.92447 0.95893 0.95061 0.91282 0.90647 0.88278 0.91475 0.92451 0.88624 0.92144 0.89002 0.93806 0.90601 0.89441 0.90985 0.98908 0.93122 0.92006 0.94858 0.94180 0.92132 0.95298 0.95402 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.14 6.19 71.98 0.45 1.58 16 3 O -0.35 -10.08 10.14 -51.42 -0.52 -10.61 16 4 C 0.47 16.22 7.11 71.24 0.51 16.73 16 5 O -0.54 -23.19 15.02 21.98 0.33 -22.86 16 6 C -0.07 -2.10 2.19 -11.97 -0.03 -2.12 16 7 H 0.12 3.83 7.26 -2.38 -0.02 3.81 16 8 C -0.10 -2.24 5.22 31.27 0.16 -2.08 16 9 C -0.11 -2.53 5.31 30.26 0.16 -2.36 16 10 C -0.11 -2.71 5.65 30.35 0.17 -2.53 16 11 C 0.06 2.18 4.44 88.07 0.39 2.57 16 12 N -0.54 -22.33 2.94 -892.29 -2.62 -24.95 16 13 C 0.23 11.65 1.81 44.17 0.08 11.72 16 14 H -0.05 -2.75 8.14 -2.38 -0.02 -2.77 16 15 C -0.50 -27.91 6.49 25.60 0.17 -27.74 16 16 H 0.05 2.82 6.72 -2.91 -0.02 2.80 16 17 C 0.02 1.00 5.30 84.65 0.45 1.45 16 18 N -0.92 -53.74 11.30 21.44 0.24 -53.50 16 19 Si 0.94 46.05 29.54 68.60 2.03 48.08 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 23 C -0.11 -5.12 4.95 30.60 0.15 -4.97 16 24 C -0.11 -4.58 9.36 71.98 0.67 -3.90 16 25 C 0.08 3.18 4.34 85.45 0.37 3.55 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.41 7.97 -2.39 -0.02 1.39 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.13 6.57 -2.39 -0.02 1.11 16 35 H 0.08 1.86 7.11 -2.39 -0.02 1.84 16 36 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.07 2.52 5.39 -2.39 -0.01 2.51 16 38 H -0.01 -0.26 7.54 -2.38 -0.02 -0.28 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.06 3.36 6.00 -2.39 -0.01 3.34 16 41 H 0.03 1.43 6.34 -2.39 -0.02 1.41 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 2.36 7.05 -2.39 -0.02 2.34 16 44 H 0.03 1.33 7.49 -2.39 -0.02 1.32 16 45 H 0.03 1.13 6.66 -2.39 -0.02 1.11 16 46 H 0.07 3.58 4.39 -2.39 -0.01 3.57 16 Total: -1.00 -66.54 345.10 4.85 -61.69 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.95 Total: 11.63 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.44 Total: -9.48 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.38 Total: -78.45 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.19 Total: -33.47 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -66.54 4.85 -61.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.354 kcal (2) G-P(sol) polarization free energy of solvation -66.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds