Wall clock time and date at job start Tue Mar 31 2020 07:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47206 * 2 1 4 4 C 1.34226 * 116.99927 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00323 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99822 * 180.02562 * 4 3 2 7 7 H 1.09004 * 108.81994 * 301.52115 * 6 4 3 8 8 C 1.45878 * 108.84637 * 59.99933 * 6 4 3 9 9 C 1.54519 * 111.68186 * 182.31084 * 8 6 4 10 10 C 1.50531 * 108.85859 * 282.74472 * 9 8 6 11 11 C 1.53918 * 112.93421 * 91.75897 * 10 9 8 12 12 N 1.47949 * 113.32856 * 317.75752 * 11 10 9 13 13 C 1.46905 * 110.99811 * 192.17777 * 12 11 10 14 14 H 1.08998 * 109.46905 * 311.79261 * 13 12 11 15 15 C 1.50699 * 109.47032 * 71.78835 * 13 12 11 16 16 H 1.08000 * 120.00176 * 0.02562 * 15 13 12 17 17 C 1.37880 * 119.99789 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99900 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99765 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46977 * 60.00438 * 19 17 15 21 21 H 1.48497 * 109.46850 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46857 * 300.00085 * 19 17 15 23 23 C 1.52999 * 109.47005 * 191.79264 * 13 12 11 24 24 C 1.52991 * 109.47274 * 62.76931 * 23 13 12 25 25 C 1.44296 * 113.65564 * 318.13639 * 12 11 10 26 26 H 1.09006 * 109.46689 * 299.99359 * 1 2 3 27 27 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47136 * 59.99324 * 1 2 3 29 29 H 1.08995 * 109.47414 * 120.00247 * 2 1 3 30 30 H 1.09006 * 109.46689 * 240.00640 * 2 1 3 31 31 H 1.08993 * 109.04305 * 302.88191 * 8 6 4 32 32 H 1.09001 * 109.03445 * 61.82517 * 8 6 4 33 33 H 1.09004 * 109.56928 * 42.55526 * 9 8 6 34 34 H 1.09002 * 109.57224 * 162.92749 * 9 8 6 35 35 H 1.08998 * 108.79223 * 212.64922 * 10 9 8 36 36 H 1.09007 * 108.78798 * 330.87052 * 10 9 8 37 37 H 1.08996 * 108.71305 * 78.75186 * 11 10 9 38 38 H 1.08998 * 108.70901 * 196.76909 * 11 10 9 39 39 H 0.97001 * 119.99600 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.46957 * 182.77290 * 23 13 12 41 41 H 1.08999 * 109.47175 * 302.76809 * 23 13 12 42 42 H 1.08998 * 109.47628 * 294.62813 * 24 23 13 43 43 H 1.09009 * 109.47066 * 54.62879 * 24 23 13 44 44 H 1.09007 * 109.47458 * 174.62053 * 24 23 13 45 45 H 1.08996 * 109.69549 * 335.68062 * 25 12 11 46 46 H 1.09008 * 109.69515 * 215.09958 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5563 3.4690 -0.8790 8 6 3.4635 3.6360 1.1962 9 6 3.9712 5.0949 1.2344 10 6 5.4180 5.0959 1.6499 11 6 6.3855 5.0396 0.4541 12 7 5.9621 4.0892 -0.5977 13 6 7.0436 3.8581 -1.5647 14 1 7.4593 4.8150 -1.8804 15 6 8.1246 3.0288 -0.9206 16 1 8.0186 2.7054 0.1043 17 6 9.2484 2.6821 -1.6403 18 7 9.3772 3.0755 -2.8885 19 14 10.5880 1.6535 -0.8421 20 1 10.0212 0.3501 -0.4120 21 1 11.6813 1.4200 -1.8195 22 1 11.1267 2.3733 0.3398 23 6 6.4890 3.1163 -2.7825 24 6 5.4404 3.9878 -3.4765 25 6 5.4555 2.8410 -0.0804 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.3737 3.6382 1.2121 32 1 3.8307 3.1098 2.0774 33 1 3.8752 5.5409 0.2445 34 1 3.3844 5.6670 1.9531 35 1 5.6186 6.0022 2.2213 36 1 5.6001 4.2325 2.2899 37 1 6.4592 6.0352 0.0167 38 1 7.3709 4.7452 0.8152 39 1 10.1680 2.8319 -3.3946 40 1 7.3006 2.9014 -3.4777 41 1 6.0294 2.1819 -2.4605 42 1 4.5850 4.1236 -2.8147 43 1 5.8744 4.9593 -3.7134 44 1 5.1147 3.5015 -4.3961 45 1 5.8649 2.6622 0.9138 46 1 5.7379 2.0256 -0.7465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:55 Heat of formation + Delta-G solvation = -99.891336 kcal Electronic energy + Delta-G solvation = -24371.761026 eV Core-core repulsion = 21067.876636 eV Total energy + Delta-G solvation = -3303.884391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52803 -38.50836 -36.35108 -35.32861 -32.61920 -32.08254 -31.47773 -30.80974 -27.04385 -25.58437 -24.93732 -23.46740 -22.71816 -21.59179 -19.97792 -19.72893 -18.64867 -17.40535 -16.42404 -16.35796 -16.15742 -15.60387 -14.63365 -14.26811 -13.95221 -13.81386 -13.55101 -13.31340 -12.95652 -12.80084 -12.76480 -12.50086 -12.15131 -11.86271 -11.70810 -11.56030 -11.35671 -11.14316 -11.01686 -10.80320 -10.73339 -10.51668 -10.46283 -10.34519 -10.29036 -9.98438 -9.88632 -9.72409 -9.57590 -9.37114 -9.03658 -8.33120 -7.08417 -5.95935 -4.08376 2.54812 2.85680 3.31642 3.36160 3.40143 4.43360 4.76324 4.86052 4.88445 4.94702 5.13088 5.20923 5.22833 5.29378 5.46198 5.60413 5.67031 5.67886 5.71574 5.84688 5.92274 6.02010 6.09011 6.17916 6.29039 6.36830 6.40237 6.46966 6.53649 6.56726 6.65467 6.71732 6.75648 6.82229 6.93422 7.14933 7.19993 7.40733 7.64238 7.81045 8.01637 8.07459 8.19342 8.37416 8.54746 9.00816 9.59078 11.03528 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.005573 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.493268 B = 5022.826700 C = 5566.928568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.503 6.503 6 C -0.073 4.073 7 H 0.112 0.888 8 C -0.108 4.108 9 C -0.103 4.103 10 C -0.122 4.122 11 C 0.065 3.935 12 N -0.544 5.544 13 C 0.220 3.780 14 H 0.039 0.961 15 C -0.542 4.542 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.113 4.113 24 C -0.136 4.136 25 C 0.090 3.910 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.024 0.976 45 H 0.036 0.964 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.039 0.359 6.006 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.280 6.280 4 C 0.304 3.696 5 O -0.390 6.390 6 C -0.093 4.093 7 H 0.129 0.871 8 C -0.146 4.146 9 C -0.141 4.141 10 C -0.160 4.160 11 C -0.063 4.063 12 N -0.267 5.267 13 C 0.114 3.886 14 H 0.057 0.943 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.133 4.133 18 N -0.524 5.524 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.151 4.151 24 C -0.193 4.193 25 C -0.040 4.040 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.062 0.248 5.611 16.075 hybrid contribution 1.521 -1.271 0.849 2.156 sum -13.541 -1.024 6.460 15.038 Atomic orbital electron populations 1.21786 0.92951 1.02647 1.03378 1.22950 0.95081 0.81050 1.02441 1.86524 1.25377 1.31642 1.84445 1.24296 0.79985 0.93512 0.71795 1.90663 1.60190 1.43340 1.44768 1.20316 0.99052 0.87994 1.01907 0.87066 1.20527 1.00634 0.96680 0.96746 1.21214 0.95596 0.94948 1.02313 1.21441 0.95265 1.01150 0.98107 1.22210 0.96507 0.96504 0.91070 1.60939 1.38027 1.11767 1.16008 1.19284 0.85541 0.95785 0.87948 0.94330 1.21724 1.03839 1.33942 0.98586 0.92780 1.24887 0.97954 0.95683 0.94775 1.69860 1.28405 1.45697 1.08451 0.86757 0.81649 0.81073 0.79154 1.20276 1.21272 1.20419 1.21657 0.97680 0.96639 0.99172 1.21699 0.99674 0.99700 0.98241 1.21430 0.88238 0.94217 1.00068 0.91639 0.90558 0.91516 0.91567 0.91379 0.91589 0.92491 0.90444 0.92543 0.92359 0.92846 0.92321 0.93942 0.92879 0.88909 0.94742 0.93718 0.94105 0.95678 0.94565 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -5.25 9.90 -39.25 -0.39 -5.63 16 4 C 0.46 7.83 7.17 36.00 0.26 8.09 16 5 O -0.50 -10.13 15.29 -18.74 -0.29 -10.41 16 6 C -0.07 -1.18 2.25 -94.63 -0.21 -1.39 16 7 H 0.11 1.80 7.66 -51.93 -0.40 1.40 16 8 C -0.11 -1.48 4.50 -29.30 -0.13 -1.61 16 9 C -0.10 -1.34 5.63 -27.17 -0.15 -1.50 16 10 C -0.12 -1.77 5.28 -27.49 -0.14 -1.92 16 11 C 0.06 1.19 5.30 -2.77 -0.01 1.17 16 12 N -0.54 -10.93 3.40 -228.04 -0.77 -11.70 16 13 C 0.22 5.31 1.70 -68.86 -0.12 5.19 16 14 H 0.04 1.03 8.06 -51.93 -0.42 0.61 16 15 C -0.54 -14.46 6.82 -34.44 -0.23 -14.69 16 16 H 0.05 1.47 6.93 -52.49 -0.36 1.11 16 17 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 18 N -0.89 -24.87 11.30 55.43 0.63 -24.24 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -2.67 5.09 -26.74 -0.14 -2.81 16 24 C -0.14 -2.72 9.71 37.15 0.36 -2.36 16 25 C 0.09 1.79 2.91 -4.70 -0.01 1.77 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 32 H 0.06 0.79 7.58 -51.93 -0.39 0.40 16 33 H 0.08 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.81 6.66 -51.92 -0.35 0.46 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.88 7.03 -51.93 -0.36 0.51 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.09 2.46 6.00 -51.93 -0.31 2.15 16 41 H 0.03 0.83 6.23 -51.93 -0.32 0.51 16 42 H 0.04 0.83 7.42 -51.93 -0.39 0.45 16 43 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.04 0.75 6.66 -51.93 -0.35 0.40 16 46 H 0.09 2.16 4.59 -51.92 -0.24 1.92 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -28.67 349.02 -8.67 -37.34 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.06 Total: 1.12 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.02 Total: -8.19 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.15 Total: -35.94 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.67 Total: -16.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.67 -8.67 -37.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.552 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds