Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47306 * 179.97438 * 3 2 1 5 5 O 1.45200 * 109.46928 * 180.02562 * 4 3 2 6 6 C 1.34229 * 116.99736 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00150 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.64411 * 298.30199 * 8 6 5 10 10 C 1.54595 * 110.72481 * 61.45453 * 8 6 5 11 11 C 1.53989 * 105.14447 * 140.49395 * 10 8 6 12 12 N 1.47908 * 107.05540 * 1.22580 * 11 10 8 13 13 C 1.46899 * 110.99926 * 214.15629 * 12 11 10 14 14 H 1.09001 * 109.46949 * 200.08876 * 13 12 11 15 15 C 1.50699 * 109.47125 * 320.08428 * 13 12 11 16 16 H 1.08005 * 120.00143 * 25.41874 * 15 13 12 17 17 C 1.37873 * 120.00078 * 205.69091 * 15 13 12 18 18 N 1.31512 * 120.00010 * 188.44885 * 17 15 13 19 19 Si 1.86804 * 120.00029 * 8.44953 * 17 15 13 20 20 H 1.48500 * 109.46919 * 92.81346 * 19 17 15 21 21 H 1.48494 * 109.47012 * 212.81395 * 19 17 15 22 22 H 1.48497 * 109.46769 * 332.81789 * 19 17 15 23 23 C 1.52995 * 109.47088 * 80.08976 * 13 12 11 24 24 C 1.53000 * 109.46973 * 299.40289 * 23 13 12 25 25 C 1.48533 * 105.81950 * 334.67264 * 12 11 10 26 26 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47624 * 300.00120 * 1 2 3 28 28 H 1.09007 * 109.46863 * 59.99994 * 1 2 3 29 29 H 1.09005 * 109.47812 * 240.00271 * 2 1 3 30 30 H 1.08999 * 109.47148 * 119.99809 * 2 1 3 31 31 H 1.08996 * 109.47086 * 59.99946 * 3 2 1 32 32 H 1.08999 * 109.46885 * 299.99970 * 3 2 1 33 33 H 1.08996 * 109.46923 * 60.00053 * 4 3 2 34 34 H 1.09007 * 109.47008 * 300.00124 * 4 3 2 35 35 H 1.09009 * 110.30710 * 21.57812 * 10 8 6 36 36 H 1.09004 * 110.39401 * 259.46198 * 10 8 6 37 37 H 1.09000 * 109.92033 * 241.87712 * 11 10 8 38 38 H 1.09001 * 109.91913 * 120.57759 * 11 10 8 39 39 H 0.97008 * 120.00096 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.47469 * 59.40690 * 23 13 12 41 41 H 1.09001 * 109.47047 * 179.40887 * 23 13 12 42 42 H 1.09006 * 109.46974 * 68.19648 * 24 23 13 43 43 H 1.08998 * 109.47327 * 188.19069 * 24 23 13 44 44 H 1.08998 * 109.47466 * 308.19412 * 24 23 13 45 45 H 1.08999 * 110.66553 * 157.64488 * 25 12 11 46 46 H 1.09003 * 110.66193 * 280.76627 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0539 2.8115 0.0013 6 6 5.3847 2.9874 0.0024 7 8 6.1208 2.0292 0.0024 8 6 5.9607 4.3799 0.0025 9 1 5.6615 4.9196 -0.8960 10 6 5.5302 5.1500 1.2721 11 6 6.7749 5.9499 1.6988 12 7 7.8336 5.6678 0.7052 13 6 9.1592 5.6533 1.3381 14 1 9.9263 5.8020 0.5781 15 6 9.2411 6.7601 2.3577 16 1 8.3406 7.1348 2.8215 17 6 10.4651 7.2981 2.6943 18 7 10.5585 8.1427 3.6980 19 14 11.9908 6.8273 1.7246 20 1 12.2053 7.8096 0.6318 21 1 13.1699 6.8255 2.6272 22 1 11.8097 5.4726 1.1440 23 6 9.3799 4.3061 2.0288 24 6 8.3120 4.1041 3.1057 25 6 7.5043 4.3390 0.1289 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 5.2412 4.4521 2.0580 36 1 4.7056 5.8257 1.0451 37 1 7.1002 5.6304 2.6889 38 1 6.5469 7.0158 1.7059 39 1 11.4198 8.5210 3.9350 40 1 9.3102 3.5049 1.2932 41 1 10.3676 4.2915 2.4895 42 1 7.3388 3.9732 2.6323 43 1 8.5519 3.2183 3.6938 44 1 8.2842 4.9768 3.7581 45 1 7.9675 4.2189 -0.8504 46 1 7.8141 3.5401 0.8027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = -80.436385 kcal Electronic energy + Delta-G solvation = -23356.961228 eV Core-core repulsion = 20053.920468 eV Total energy + Delta-G solvation = -3303.040761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.68111 -38.97718 -36.82986 -35.22760 -34.18934 -31.94028 -30.22251 -29.54109 -28.80520 -27.01985 -24.38272 -23.50214 -22.55572 -21.51072 -20.71890 -19.96379 -19.10302 -17.50308 -16.90330 -16.57387 -16.38068 -15.67077 -15.12810 -14.92096 -14.22138 -13.94023 -13.81014 -13.55293 -13.43465 -13.01424 -12.79892 -12.50022 -12.29823 -12.11706 -11.73443 -11.68278 -11.57507 -11.41576 -11.20376 -11.11293 -10.98563 -10.93912 -10.69856 -10.66573 -10.59998 -10.37942 -10.09760 -10.00787 -9.72123 -9.61344 -8.95276 -8.50811 -7.30088 -6.09681 -4.07436 2.28134 2.61988 3.29744 3.38529 3.41185 4.39420 4.42113 4.52190 4.62168 4.71179 4.90642 4.94119 4.99353 5.08622 5.14561 5.18432 5.34916 5.40755 5.42282 5.43639 5.57871 5.71217 5.75548 5.83527 5.88287 5.91872 5.95341 6.04105 6.09791 6.18565 6.27741 6.32867 6.44868 6.60723 6.65343 6.70689 6.95652 6.99130 7.12005 7.21431 7.45966 7.80649 7.92989 8.09514 8.55887 8.93960 9.53740 11.02224 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040712 B = 0.003316 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.596068 B = 8441.360069 C = 8592.802117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.471 3.529 7 O -0.507 6.507 8 C -0.088 4.088 9 H 0.115 0.885 10 C -0.119 4.119 11 C 0.028 3.972 12 N -0.500 5.500 13 C 0.172 3.828 14 H 0.045 0.955 15 C -0.509 4.509 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.871 3.129 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.262 1.262 23 C -0.152 4.152 24 C -0.148 4.148 25 C 0.032 3.968 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.264 0.736 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.029 0.971 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -12.928 -6.948 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.010 4.010 5 O -0.274 6.274 6 C 0.314 3.686 7 O -0.395 6.395 8 C -0.107 4.107 9 H 0.133 0.867 10 C -0.157 4.157 11 C -0.099 4.099 12 N -0.224 5.224 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.547 4.547 16 H 0.102 0.898 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.699 3.301 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.186 1.186 23 C -0.191 4.191 24 C -0.204 4.204 25 C -0.096 4.096 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.999 -12.705 -7.233 21.673 hybrid contribution 1.006 -0.980 0.112 1.409 sum -14.993 -13.685 -7.121 21.512 Atomic orbital electron populations 1.21747 0.95151 1.01836 1.02130 1.21441 0.96397 0.95669 1.02523 1.21608 0.92522 0.97756 1.03845 1.23063 0.94791 0.80658 1.02506 1.86517 1.24939 1.31813 1.84137 1.23860 0.80187 0.92823 0.71708 1.90651 1.60373 1.43200 1.45243 1.22051 0.97614 0.88726 1.02347 0.86686 1.22480 0.99956 0.98608 0.94701 1.23209 0.89020 0.99969 0.97737 1.65156 1.03445 1.23410 1.30391 1.19940 0.87052 0.93134 0.93466 0.93707 1.21039 0.95056 1.17381 1.21248 0.89781 1.24933 0.98659 0.94544 0.94564 1.69906 1.25282 1.31197 1.26957 0.86951 0.83003 0.79712 0.80482 1.20266 1.21597 1.18643 1.22384 0.99183 0.99711 0.97817 1.22011 0.98188 1.00893 0.99351 1.23439 0.90117 0.94699 1.01315 0.92511 0.92481 0.92540 0.91668 0.91610 0.90672 0.90752 0.91404 0.91352 0.91871 0.90468 0.89905 0.90661 0.92649 0.94151 0.92641 0.93587 0.95146 0.90368 0.90549 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.12 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.12 -0.95 5.59 -26.73 -0.15 -1.10 16 4 C 0.06 0.67 5.47 37.16 0.20 0.88 16 5 O -0.36 -4.68 10.20 -39.25 -0.40 -5.08 16 6 C 0.47 7.11 7.14 36.01 0.26 7.37 16 7 O -0.51 -8.88 15.55 -18.75 -0.29 -9.18 16 8 C -0.09 -1.31 3.55 -89.91 -0.32 -1.63 16 9 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 10 C -0.12 -1.77 5.95 -25.38 -0.15 -1.92 16 11 C 0.03 0.53 4.21 -2.75 -0.01 0.51 16 12 N -0.50 -10.20 5.46 -223.89 -1.22 -11.42 16 13 C 0.17 3.98 2.32 -68.87 -0.16 3.82 16 14 H 0.05 1.09 5.55 -51.93 -0.29 0.80 16 15 C -0.51 -13.50 7.03 -34.44 -0.24 -13.74 16 16 H 0.08 2.36 6.06 -52.48 -0.32 2.05 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 19 Si 0.87 21.20 26.54 -169.99 -4.51 16.69 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.11 6.11 56.52 0.35 -5.77 16 23 C -0.15 -3.25 4.88 -26.73 -0.13 -3.38 16 24 C -0.15 -2.93 7.86 37.16 0.29 -2.63 16 25 C 0.03 0.57 4.65 -1.90 -0.01 0.57 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.06 0.91 7.55 -51.92 -0.39 0.52 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.66 3.24 -51.93 -0.17 1.50 16 38 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.04 0.81 6.02 -51.93 -0.31 0.50 16 41 H 0.05 1.24 7.15 -51.93 -0.37 0.87 16 42 H 0.05 0.85 4.19 -51.93 -0.22 0.63 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.70 6.08 -51.93 -0.32 1.39 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 1.40 3.61 -51.93 -0.19 1.22 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -29.74 343.50 -8.45 -38.19 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.67 Total: 2.05 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.31 Total: -10.71 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.45 Total: -37.15 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.69 Total: -14.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.51 Total: 16.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.74 -8.45 -38.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.244 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds