Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53000 * 109.47115 * 179.97438 * 3 2 1 5 5 O 1.45205 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.34231 * 116.99551 * 180.02562 * 5 4 3 7 7 O 1.20820 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99511 * 180.02562 * 6 5 4 9 9 H 1.09004 * 110.63011 * 300.69803 * 8 6 5 10 10 C 1.55140 * 110.86063 * 63.90887 * 8 6 5 11 11 C 1.54902 * 101.65642 * 154.10460 * 10 8 6 12 12 N 1.47847 * 104.79755 * 322.93193 * 11 10 8 13 13 C 1.46900 * 111.00242 * 146.36124 * 12 11 10 14 14 H 1.09001 * 109.46493 * 58.11243 * 13 12 11 15 15 C 1.50700 * 109.47213 * 298.11317 * 13 12 11 16 16 H 1.08002 * 119.99694 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00154 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00022 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00334 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47007 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47337 * 119.99917 * 19 17 15 22 22 H 1.48499 * 109.47434 * 240.00222 * 19 17 15 23 23 C 1.52998 * 109.46893 * 178.11096 * 13 12 11 24 24 C 1.52994 * 109.47305 * 295.83420 * 23 13 12 25 25 C 1.47449 * 108.56324 * 24.09426 * 12 11 10 26 26 H 1.09004 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47387 * 300.00073 * 1 2 3 28 28 H 1.08999 * 109.47179 * 59.99906 * 1 2 3 29 29 H 1.08996 * 109.47387 * 239.99927 * 2 1 3 30 30 H 1.08999 * 109.47179 * 120.00094 * 2 1 3 31 31 H 1.09008 * 109.47086 * 60.00071 * 3 2 1 32 32 H 1.08999 * 109.47104 * 300.00140 * 3 2 1 33 33 H 1.09000 * 109.46914 * 60.00564 * 4 3 2 34 34 H 1.08999 * 109.47530 * 300.00224 * 4 3 2 35 35 H 1.08998 * 110.99083 * 272.20318 * 10 8 6 36 36 H 1.09009 * 110.98891 * 36.01137 * 10 8 6 37 37 H 1.09001 * 110.37361 * 204.10566 * 11 10 8 38 38 H 1.09000 * 110.46817 * 81.80879 * 11 10 8 39 39 H 0.97000 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47479 * 55.84456 * 23 13 12 41 41 H 1.09007 * 109.46469 * 175.83818 * 23 13 12 42 42 H 1.09006 * 109.46958 * 65.08582 * 24 23 13 43 43 H 1.09005 * 109.47101 * 185.07540 * 24 23 13 44 44 H 1.08998 * 109.47561 * 305.08056 * 24 23 13 45 45 H 1.09001 * 109.89141 * 239.60408 * 25 12 11 46 46 H 1.08997 * 110.01952 * 118.49331 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0540 2.8115 0.0013 6 6 5.3847 2.9872 0.0013 7 8 6.1207 2.0291 0.0014 8 6 5.9607 4.3798 0.0025 9 1 5.6262 4.9345 -0.8741 10 6 5.5828 5.1329 1.3052 11 6 6.7413 6.1543 1.4236 12 7 7.9378 5.4242 0.9533 13 6 8.8679 6.3274 0.2626 14 1 9.1590 7.1335 0.9361 15 6 8.1941 6.9080 -0.9540 16 1 7.1768 6.6331 -1.1906 17 6 8.8762 7.7900 -1.7649 18 7 10.1152 8.1243 -1.4771 19 14 8.0413 8.5090 -3.2733 20 1 6.6586 7.9770 -3.3745 21 1 7.9944 9.9886 -3.1550 22 1 8.8069 8.1336 -4.4891 23 6 10.1120 5.5473 -0.1670 24 6 10.8531 5.0457 1.0740 25 6 7.5020 4.3327 0.0629 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.6240 5.6404 1.1987 36 1 5.5711 4.4549 2.1587 37 1 6.8693 6.4643 2.4607 38 1 6.5519 7.0206 0.7899 39 1 10.5950 8.7451 -2.0474 40 1 9.8139 4.6972 -0.7806 41 1 10.7684 6.1991 -0.7435 42 1 10.2300 4.3241 1.6024 43 1 11.7854 4.5683 0.7721 44 1 11.0720 5.8871 1.7314 45 1 7.8281 3.3735 0.4650 46 1 7.9168 4.4768 -0.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -106.937485 kcal Electronic energy + Delta-G solvation = -23156.561061 eV Core-core repulsion = 19852.371127 eV Total energy + Delta-G solvation = -3304.189935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47236 -38.34742 -36.66729 -35.14827 -34.15935 -31.72938 -30.31132 -29.44838 -28.31025 -26.37500 -24.41822 -23.07559 -22.39350 -21.44669 -20.65862 -20.08641 -18.62574 -17.61962 -16.70224 -16.58033 -15.98831 -15.74541 -15.18408 -14.40817 -14.19569 -13.76670 -13.60863 -13.19612 -13.07114 -12.93670 -12.61872 -12.40126 -12.08399 -12.02134 -11.62418 -11.53420 -11.41365 -11.31299 -11.18078 -11.05307 -10.91798 -10.79922 -10.69595 -10.50235 -10.47079 -10.26926 -10.06549 -9.97975 -9.57873 -9.51144 -9.04311 -8.38238 -7.18928 -6.01459 -4.14820 2.43297 2.76259 3.23740 3.32962 3.34705 4.36803 4.50744 4.58198 4.69991 4.88162 4.97070 5.02296 5.07874 5.19593 5.22857 5.24937 5.41585 5.47785 5.49393 5.55962 5.66507 5.76883 5.89251 5.92964 5.97720 6.00934 6.16695 6.36916 6.49185 6.50207 6.56017 6.69509 6.71024 6.78024 6.79912 7.11026 7.20501 7.32049 7.61152 7.74017 7.93910 7.98618 8.13147 8.25489 8.42726 8.95234 9.52429 10.97959 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.003805 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.972146 B = 7356.041260 C = 8096.184147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.064 3.936 5 O -0.359 6.359 6 C 0.475 3.525 7 O -0.507 6.507 8 C -0.104 4.104 9 H 0.111 0.889 10 C -0.111 4.111 11 C 0.044 3.956 12 N -0.524 5.524 13 C 0.206 3.794 14 H 0.041 0.959 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.069 3.931 18 N -0.883 5.883 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.113 4.113 24 C -0.137 4.137 25 C 0.065 3.935 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.025 0.975 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -10.857 3.616 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.010 4.010 5 O -0.276 6.276 6 C 0.318 3.682 7 O -0.394 6.394 8 C -0.124 4.124 9 H 0.129 0.871 10 C -0.150 4.150 11 C -0.084 4.084 12 N -0.248 5.248 13 C 0.099 3.901 14 H 0.059 0.941 15 C -0.582 4.582 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.713 3.287 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.151 4.151 24 C -0.195 4.195 25 C -0.064 4.064 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.631 -11.259 3.984 18.123 hybrid contribution -0.801 0.653 -1.718 2.005 sum -14.432 -10.606 2.266 18.053 Atomic orbital electron populations 1.21747 0.95210 1.01789 1.02106 1.21438 0.96338 0.95723 1.02515 1.21606 0.92659 0.97686 1.03787 1.23038 0.94682 0.80856 1.02451 1.86527 1.25180 1.31655 1.84244 1.23844 0.79985 0.92891 0.71511 1.90626 1.60277 1.43162 1.45342 1.22469 0.99114 0.88978 1.01832 0.87121 1.22659 0.99467 0.97987 0.94857 1.22942 0.88609 0.96353 1.00451 1.64066 1.12758 1.11465 1.36498 1.19491 0.88957 0.89670 0.91960 0.94121 1.21780 0.99501 1.26463 1.10459 0.92487 1.24917 0.94776 0.96173 0.97544 1.69887 1.09937 1.33931 1.38354 0.86647 0.79691 0.79008 0.83309 1.19911 1.21001 1.21000 1.21635 0.98724 0.98759 0.96022 1.21699 0.98273 0.99921 0.99572 1.22703 0.88103 0.96710 0.98863 0.92538 0.92528 0.92543 0.91647 0.91636 0.90755 0.90775 0.91437 0.91415 0.90678 0.91301 0.91521 0.91485 0.92905 0.94821 0.88925 0.93560 0.95575 0.94134 0.90785 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.88 5.93 -26.73 -0.16 -1.04 16 3 C -0.12 -1.05 5.59 -26.73 -0.15 -1.20 16 4 C 0.06 0.74 5.47 37.16 0.20 0.94 16 5 O -0.36 -5.20 10.22 -39.26 -0.40 -5.61 16 6 C 0.47 7.95 7.27 36.00 0.26 8.21 16 7 O -0.51 -9.62 15.19 -18.75 -0.28 -9.90 16 8 C -0.10 -1.78 3.22 -89.95 -0.29 -2.07 16 9 H 0.11 1.90 7.87 -51.93 -0.41 1.49 16 10 C -0.11 -1.74 6.52 -24.60 -0.16 -1.90 16 11 C 0.04 0.82 6.37 -2.30 -0.01 0.81 16 12 N -0.52 -10.99 4.70 -224.68 -1.06 -12.05 16 13 C 0.21 4.96 1.77 -68.87 -0.12 4.84 16 14 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.54 -13.92 6.22 -34.44 -0.21 -14.13 16 16 H 0.06 1.44 6.35 -52.49 -0.33 1.11 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 18 N -0.88 -24.34 11.30 55.43 0.63 -23.71 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.11 -2.68 5.07 -26.74 -0.14 -2.82 16 24 C -0.14 -2.85 9.73 37.15 0.36 -2.49 16 25 C 0.06 1.29 4.76 -2.83 -0.01 1.28 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.03 8.05 -51.92 -0.42 0.62 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.35 6.46 -51.93 -0.34 1.02 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.03 0.79 6.46 -51.93 -0.34 0.46 16 41 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 42 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.53 6.85 -51.93 -0.36 1.17 16 46 H 0.08 1.68 5.66 -51.93 -0.29 1.39 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -28.05 359.21 -9.13 -37.18 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.25 Total: 1.52 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.16 Total: -8.42 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.43 Total: -35.76 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.69 Total: -15.51 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.05 -9.13 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.754 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds