Wall clock time and date at job start Tue Mar 31 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53000 * 109.47115 * 179.97438 * 3 2 1 5 5 O 1.45205 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.34231 * 116.99551 * 180.02562 * 5 4 3 7 7 O 1.20820 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99511 * 180.02562 * 6 5 4 9 9 H 1.09004 * 110.63011 * 300.69803 * 8 6 5 10 10 C 1.55140 * 110.86063 * 63.90887 * 8 6 5 11 11 C 1.54902 * 101.65642 * 154.10460 * 10 8 6 12 12 N 1.47847 * 104.79755 * 322.93193 * 11 10 8 13 13 C 1.46900 * 111.00242 * 146.36124 * 12 11 10 14 14 H 1.09001 * 109.46493 * 58.11243 * 13 12 11 15 15 C 1.50700 * 109.47213 * 298.11317 * 13 12 11 16 16 H 1.08002 * 119.99694 * 359.97438 * 15 13 12 17 17 C 1.37870 * 120.00154 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00022 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00334 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47007 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47337 * 119.99917 * 19 17 15 22 22 H 1.48499 * 109.47434 * 240.00222 * 19 17 15 23 23 C 1.52998 * 109.46893 * 178.11096 * 13 12 11 24 24 C 1.52994 * 109.47305 * 295.83420 * 23 13 12 25 25 C 1.47449 * 108.56324 * 24.09426 * 12 11 10 26 26 H 1.09004 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47387 * 300.00073 * 1 2 3 28 28 H 1.08999 * 109.47179 * 59.99906 * 1 2 3 29 29 H 1.08996 * 109.47387 * 239.99927 * 2 1 3 30 30 H 1.08999 * 109.47179 * 120.00094 * 2 1 3 31 31 H 1.09008 * 109.47086 * 60.00071 * 3 2 1 32 32 H 1.08999 * 109.47104 * 300.00140 * 3 2 1 33 33 H 1.09000 * 109.46914 * 60.00564 * 4 3 2 34 34 H 1.08999 * 109.47530 * 300.00224 * 4 3 2 35 35 H 1.08998 * 110.99083 * 272.20318 * 10 8 6 36 36 H 1.09009 * 110.98891 * 36.01137 * 10 8 6 37 37 H 1.09001 * 110.37361 * 204.10566 * 11 10 8 38 38 H 1.09000 * 110.46817 * 81.80879 * 11 10 8 39 39 H 0.97000 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47479 * 55.84456 * 23 13 12 41 41 H 1.09007 * 109.46469 * 175.83818 * 23 13 12 42 42 H 1.09006 * 109.46958 * 65.08582 * 24 23 13 43 43 H 1.09005 * 109.47101 * 185.07540 * 24 23 13 44 44 H 1.08998 * 109.47561 * 305.08056 * 24 23 13 45 45 H 1.09001 * 109.89141 * 239.60408 * 25 12 11 46 46 H 1.08997 * 110.01952 * 118.49331 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 8 4.0540 2.8115 0.0013 6 6 5.3847 2.9872 0.0013 7 8 6.1207 2.0291 0.0014 8 6 5.9607 4.3798 0.0025 9 1 5.6262 4.9345 -0.8741 10 6 5.5828 5.1329 1.3052 11 6 6.7413 6.1543 1.4236 12 7 7.9378 5.4242 0.9533 13 6 8.8679 6.3274 0.2626 14 1 9.1590 7.1335 0.9361 15 6 8.1941 6.9080 -0.9540 16 1 7.1768 6.6331 -1.1906 17 6 8.8762 7.7900 -1.7649 18 7 10.1152 8.1243 -1.4771 19 14 8.0413 8.5090 -3.2733 20 1 6.6586 7.9770 -3.3745 21 1 7.9944 9.9886 -3.1550 22 1 8.8069 8.1336 -4.4891 23 6 10.1120 5.5473 -0.1670 24 6 10.8531 5.0457 1.0740 25 6 7.5020 4.3327 0.0629 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.6240 5.6404 1.1987 36 1 5.5711 4.4549 2.1587 37 1 6.8693 6.4643 2.4607 38 1 6.5519 7.0206 0.7899 39 1 10.5950 8.7451 -2.0474 40 1 9.8139 4.6972 -0.7806 41 1 10.7684 6.1991 -0.7435 42 1 10.2300 4.3241 1.6024 43 1 11.7854 4.5683 0.7721 44 1 11.0720 5.8871 1.7314 45 1 7.8281 3.3735 0.4650 46 1 7.9168 4.4768 -0.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:00 Heat of formation + Delta-G solvation = -121.345636 kcal Electronic energy + Delta-G solvation = -23157.185846 eV Core-core repulsion = 19852.371127 eV Total energy + Delta-G solvation = -3304.814719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79075 -39.89121 -37.86372 -35.98320 -35.86076 -33.65705 -31.75464 -30.40272 -29.80003 -28.25838 -25.58497 -24.71368 -23.66972 -22.23431 -22.13077 -21.49208 -20.35863 -19.03978 -18.21936 -17.82648 -17.48113 -17.26277 -16.31229 -16.00867 -15.38245 -14.93177 -14.75140 -14.61019 -14.56706 -14.44032 -14.05699 -13.80098 -13.26330 -13.16992 -13.03613 -12.92517 -12.81292 -12.66769 -12.56287 -12.38054 -12.29289 -12.02963 -12.00153 -11.97029 -11.75735 -11.67469 -11.49189 -11.41862 -11.38603 -11.29988 -10.93422 -10.41621 -8.95651 -8.01366 -6.22490 1.11042 1.38357 1.42146 1.50486 1.59080 2.41991 3.18465 3.38037 3.56431 3.61987 3.84919 3.87793 3.96765 4.15770 4.21481 4.31156 4.42893 4.51201 4.57847 4.58601 4.61785 4.72998 4.84716 4.88799 4.89847 4.91212 4.98971 5.02373 5.08400 5.14548 5.18558 5.24483 5.30320 5.30539 5.38560 5.43772 5.45263 5.49425 5.64092 5.79552 6.03948 6.19217 6.41612 6.55602 6.69448 6.97417 7.47635 8.94981 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020359 B = 0.003805 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.972146 B = 7356.041260 C = 8096.184147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.057 3.943 5 O -0.355 6.355 6 C 0.483 3.517 7 O -0.533 6.533 8 C -0.102 4.102 9 H 0.112 0.888 10 C -0.096 4.096 11 C 0.041 3.959 12 N -0.527 5.527 13 C 0.214 3.786 14 H 0.009 0.991 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.944 3.056 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.286 1.286 23 C -0.109 4.109 24 C -0.126 4.126 25 C 0.070 3.930 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.260 0.740 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.068 0.932 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 -11.638 3.907 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.150 4.150 4 C -0.016 4.016 5 O -0.272 6.272 6 C 0.327 3.673 7 O -0.423 6.423 8 C -0.122 4.122 9 H 0.130 0.870 10 C -0.133 4.133 11 C -0.087 4.087 12 N -0.251 5.251 13 C 0.107 3.893 14 H 0.027 0.973 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.179 4.179 18 N -0.551 5.551 19 Si 0.771 3.229 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.212 1.212 23 C -0.148 4.148 24 C -0.183 4.183 25 C -0.058 4.058 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.889 -12.045 4.283 20.394 hybrid contribution -0.138 0.846 -1.779 1.975 sum -16.028 -11.199 2.504 19.712 Atomic orbital electron populations 1.21744 0.94330 1.02406 1.02295 1.21443 0.97032 0.94557 1.02812 1.21611 0.90356 0.98927 1.04101 1.23354 0.96466 0.79290 1.02507 1.86507 1.23553 1.33517 1.83578 1.23583 0.80639 0.92138 0.70919 1.90621 1.61086 1.43831 1.46734 1.22326 0.97021 0.89875 1.02942 0.86959 1.22616 0.99410 0.97112 0.94206 1.23011 0.88770 0.96342 1.00591 1.63984 1.13807 1.11268 1.36045 1.19233 0.89827 0.89339 0.90947 0.97310 1.22025 0.99520 1.26082 1.10766 0.92357 1.25617 0.95330 0.96836 1.00161 1.70014 1.11112 1.34617 1.39405 0.85715 0.78993 0.78180 0.80016 1.19065 1.20839 1.21174 1.21501 0.98481 0.97868 0.96934 1.21565 0.98795 0.99884 0.98060 1.22516 0.90397 0.95883 0.97053 0.91755 0.92261 0.92458 0.91511 0.91275 0.90261 0.90632 0.91618 0.91236 0.87839 0.90119 0.90188 0.93341 0.93035 0.95377 0.91735 0.92925 0.93797 0.94450 0.91386 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.28 16 3 C -0.11 -1.72 5.59 30.59 0.17 -1.55 16 4 C 0.06 1.22 5.47 71.98 0.39 1.62 16 5 O -0.36 -9.54 10.22 -51.42 -0.53 -10.06 16 6 C 0.48 15.46 7.27 71.24 0.52 15.97 16 7 O -0.53 -19.77 15.19 21.98 0.33 -19.44 16 8 C -0.10 -3.35 3.22 -10.36 -0.03 -3.38 16 9 H 0.11 3.69 7.87 -2.39 -0.02 3.67 16 10 C -0.10 -2.74 6.52 31.98 0.21 -2.53 16 11 C 0.04 1.45 6.37 86.77 0.55 2.00 16 12 N -0.53 -22.06 4.70 -864.75 -4.07 -26.13 16 13 C 0.21 10.53 1.77 44.17 0.08 10.60 16 14 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 15 C -0.54 -28.27 6.22 25.60 0.16 -28.11 16 16 H 0.06 2.95 6.35 -2.91 -0.02 2.93 16 17 C 0.02 1.09 5.29 84.65 0.45 1.54 16 18 N -0.91 -51.41 11.30 21.45 0.24 -51.17 16 19 Si 0.94 42.46 29.54 68.60 2.03 44.49 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 23 C -0.11 -5.30 5.07 30.59 0.16 -5.15 16 24 C -0.13 -5.21 9.73 71.98 0.70 -4.50 16 25 C 0.07 2.80 4.76 86.64 0.41 3.21 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.17 8.05 -2.38 -0.02 2.15 16 37 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 1.93 6.46 -2.39 -0.02 1.91 16 39 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.03 1.35 6.46 -2.39 -0.02 1.34 16 41 H 0.06 3.51 5.97 -2.38 -0.01 3.49 16 42 H 0.05 2.09 7.87 -2.38 -0.02 2.07 16 43 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 2.80 6.85 -2.39 -0.02 2.79 16 46 H 0.05 2.26 5.66 -2.39 -0.01 2.25 16 Total: -1.00 -60.25 359.21 3.60 -56.66 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.93 Total: 18.03 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.66 Total: -12.38 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -3.83 Total: -77.30 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.19 Total: -29.50 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -60.25 3.60 -56.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.687 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds