Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 C 1.53000 * 109.46924 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99878 * 269.99965 * 5 4 3 7 7 H 1.08004 * 119.99686 * 141.82056 * 6 5 4 8 8 C 1.38807 * 120.00433 * 321.82218 * 6 5 4 9 9 N 1.31617 * 120.00136 * 339.52833 * 8 6 5 10 10 Si 1.86804 * 120.00042 * 159.52259 * 8 6 5 11 11 H 1.48498 * 109.47005 * 90.00203 * 10 8 6 12 12 H 1.48501 * 109.47260 * 210.00096 * 10 8 6 13 13 H 1.48493 * 109.47229 * 330.00025 * 10 8 6 14 14 C 1.46501 * 119.99928 * 90.00333 * 5 4 3 15 15 H 1.09002 * 110.01639 * 6.53685 * 14 5 4 16 16 C 1.53876 * 110.03115 * 127.97148 * 14 5 4 17 17 C 1.54265 * 106.59537 * 119.28486 * 16 14 5 18 18 C 1.54890 * 104.19708 * 23.60968 * 17 16 14 19 19 H 1.08994 * 110.75549 * 80.37065 * 18 17 16 20 20 C 1.50704 * 110.75472 * 203.74182 * 18 17 16 21 21 O 1.20831 * 119.99766 * 113.33229 * 20 18 17 22 22 O 1.34228 * 119.99896 * 293.32476 * 20 18 17 23 23 C 1.45205 * 116.99515 * 180.02562 * 22 20 18 24 24 C 1.53001 * 109.46760 * 180.02562 * 23 22 20 25 25 C 1.54262 * 110.03111 * 245.13995 * 14 5 4 26 26 H 1.08992 * 109.46948 * 299.99741 * 1 2 3 27 27 H 1.08999 * 109.46952 * 60.00325 * 1 2 3 28 28 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47138 * 239.99872 * 2 1 3 30 30 H 1.09004 * 109.47160 * 120.00094 * 2 1 3 31 31 H 1.09000 * 109.46853 * 60.00596 * 3 2 1 32 32 H 1.08989 * 109.47559 * 299.99669 * 3 2 1 33 33 H 1.09006 * 109.47217 * 60.00640 * 4 3 2 34 34 H 1.08996 * 109.47702 * 300.00495 * 4 3 2 35 35 H 0.97001 * 120.00110 * 175.10938 * 9 8 6 36 36 H 1.08996 * 110.03691 * 238.56889 * 16 14 5 37 37 H 1.09001 * 110.03478 * 0.02562 * 16 14 5 38 38 H 1.08997 * 110.48893 * 142.28995 * 17 16 14 39 39 H 1.09004 * 110.48920 * 264.79992 * 17 16 14 40 40 H 1.08999 * 109.47243 * 300.00117 * 23 22 20 41 41 H 1.08993 * 109.47276 * 60.00167 * 23 22 20 42 42 H 1.09005 * 109.47318 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.47077 * 299.99899 * 24 23 22 44 44 H 1.08997 * 109.47108 * 60.00332 * 24 23 22 45 45 H 1.08999 * 110.49026 * 335.78537 * 25 14 5 46 46 H 1.09004 * 110.48757 * 98.42810 * 25 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.0442 4.5173 -1.2842 8 6 4.8309 2.7779 -2.2579 9 7 5.4909 1.6579 -2.0528 10 14 4.6259 3.4367 -3.9939 11 1 5.7612 4.3371 -4.3189 12 1 4.6022 2.3038 -4.9537 13 1 3.3515 4.1929 -4.0891 14 6 4.3020 3.5140 1.2703 15 1 4.1801 2.8199 2.1019 16 6 5.7211 4.1088 1.2828 17 6 5.5579 5.6344 1.4429 18 6 4.1705 5.8000 2.1113 19 1 4.2353 5.6229 3.1848 20 6 3.6004 7.1658 1.8272 21 8 2.6118 7.2772 1.1416 22 8 4.1910 8.2586 2.3360 23 6 3.5869 9.5411 2.0215 24 6 4.3930 10.6604 2.6834 25 6 3.3261 4.6988 1.4233 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8907 35 1 5.8096 1.1376 -2.8069 36 1 6.2883 3.7040 2.1208 37 1 6.2283 3.8844 0.3444 38 1 6.3413 6.0365 2.0853 39 1 5.5754 6.1243 0.4693 40 1 3.5835 9.6860 0.9412 41 1 2.5627 9.5614 2.3939 42 1 3.9394 11.6232 2.4477 43 1 4.3967 10.5157 3.7637 44 1 5.4170 10.6400 2.3105 45 1 2.9808 5.0373 0.4464 46 1 2.4806 4.4181 2.0515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257063668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -97.527661 kcal Electronic energy + Delta-G solvation = -23464.833853 eV Core-core repulsion = 20161.051959 eV Total energy + Delta-G solvation = -3303.781894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35062 -37.86856 -36.34007 -35.22162 -33.40092 -31.79704 -30.98646 -28.70569 -28.03785 -26.74988 -24.27371 -23.49189 -21.98158 -21.38644 -20.19421 -19.61702 -19.14714 -17.46274 -16.51208 -16.27498 -16.04317 -14.99173 -14.84741 -14.45761 -14.06143 -13.83961 -13.30394 -13.27951 -13.16075 -12.87901 -12.74549 -12.10102 -11.97180 -11.88920 -11.71184 -11.62974 -11.16612 -11.10759 -10.95618 -10.73277 -10.63437 -10.51275 -10.48068 -10.28810 -10.25932 -10.16038 -10.07441 -9.90179 -9.65354 -9.50995 -9.37922 -8.39289 -6.51010 -5.69232 -3.33151 2.50228 2.86414 3.38779 3.46979 3.52133 4.52871 4.82287 4.84462 4.94946 5.05933 5.19342 5.21227 5.33689 5.44922 5.52077 5.56125 5.66594 5.68286 5.76319 5.78920 5.85859 5.96775 6.12171 6.18953 6.24613 6.29240 6.32640 6.38953 6.45848 6.53561 6.58398 6.64368 6.68135 6.76083 6.88546 6.96852 6.97621 7.17200 7.33786 7.38467 7.80676 7.90105 8.04259 8.59422 9.26860 9.88835 10.46855 11.25850 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.004968 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.242470 B = 5635.024683 C = 6522.855756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.146 3.854 5 N -0.577 5.577 6 C -0.245 4.245 7 H 0.058 0.942 8 C 0.013 3.987 9 N -0.885 5.885 10 Si 0.887 3.113 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.172 3.828 15 H 0.052 0.948 16 C -0.130 4.130 17 C -0.101 4.101 18 C -0.088 4.088 19 H 0.103 0.897 20 C 0.469 3.531 21 O -0.506 6.506 22 O -0.361 6.361 23 C 0.059 3.941 24 C -0.151 4.151 25 C -0.119 4.119 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.020 0.980 35 H 0.252 0.748 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 7.779 9.817 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.020 3.980 5 N -0.296 5.296 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.187 4.187 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.064 3.936 15 H 0.070 0.930 16 C -0.169 4.169 17 C -0.139 4.139 18 C -0.108 4.108 19 H 0.121 0.879 20 C 0.312 3.688 21 O -0.393 6.393 22 O -0.279 6.279 23 C -0.015 4.015 24 C -0.208 4.208 25 C -0.159 4.159 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.791 7.744 9.481 12.556 hybrid contribution -0.356 0.502 -1.021 1.192 sum -3.147 8.246 8.460 12.226 Atomic orbital electron populations 1.21771 0.97100 1.00357 1.01341 1.21481 0.94583 0.98717 1.01184 1.22194 1.00426 0.94029 1.00727 1.20961 0.89262 0.86468 1.01270 1.43932 1.74056 1.11358 1.00224 1.18871 1.34266 0.95514 0.88838 0.92405 1.25098 0.96378 0.98300 0.98888 1.70057 1.36211 1.16683 1.29847 0.86564 0.78189 0.78159 0.85455 1.21385 1.21586 1.20411 1.20986 0.91189 0.91983 0.89463 0.92980 1.22573 0.99361 0.92296 1.02701 1.22231 0.92911 0.98898 0.99877 1.22137 0.98932 0.87322 1.02367 0.87855 1.24026 0.81682 0.86911 0.76169 1.90650 1.25569 1.87210 1.35874 1.86538 1.55983 1.15511 1.69834 1.22954 0.97126 0.80719 1.00727 1.21788 1.01065 0.96334 1.01604 1.22944 0.97540 0.94259 1.01139 0.93331 0.93096 0.93749 0.92420 0.92978 0.94120 0.92487 0.88971 0.96171 0.93798 0.93358 0.88861 0.91856 0.91472 0.91396 0.91568 0.90541 0.91629 0.91469 0.89272 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.66 5.54 -26.73 -0.15 -2.81 16 4 C 0.15 3.33 5.29 -4.04 -0.02 3.31 16 5 N -0.58 -13.66 2.39 -164.39 -0.39 -14.05 16 6 C -0.25 -6.43 7.64 -15.06 -0.12 -6.54 16 7 H 0.06 1.58 7.10 -52.48 -0.37 1.20 16 8 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 9 N -0.89 -24.73 11.45 55.49 0.64 -24.10 16 10 Si 0.89 21.58 29.60 -169.99 -5.03 16.54 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.17 3.45 3.43 -66.81 -0.23 3.22 16 15 H 0.05 0.99 7.80 -51.93 -0.40 0.58 16 16 C -0.13 -2.46 6.23 -25.61 -0.16 -2.62 16 17 C -0.10 -1.67 6.26 -25.07 -0.16 -1.83 16 18 C -0.09 -1.41 3.40 -89.78 -0.31 -1.71 16 19 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 20 C 0.47 7.92 7.26 36.01 0.26 8.18 16 21 O -0.51 -10.02 15.47 -18.75 -0.29 -10.31 16 22 O -0.36 -5.29 10.22 -39.25 -0.40 -5.69 16 23 C 0.06 0.70 6.19 37.16 0.23 0.93 16 24 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 25 C -0.12 -2.24 5.50 -25.08 -0.14 -2.37 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.24 8.14 -51.94 -0.42 0.82 16 33 H 0.09 2.39 5.53 -51.93 -0.29 2.10 16 34 H 0.02 0.44 7.89 -51.93 -0.41 0.03 16 35 H 0.25 6.87 8.32 -40.82 -0.34 6.53 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.13 7.06 -51.93 -0.37 1.76 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 41 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.98 6.12 -51.93 -0.32 1.66 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -28.95 366.42 -8.71 -37.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.48 Total: 1.27 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.28 Total: -6.85 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.24 Total: -38.15 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.69 Total: -16.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.95 -8.71 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257063668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.869 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds