Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47025 * 2 1 4 4 C 1.53008 * 109.47025 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47175 * 179.97438 * 4 3 2 6 6 C 1.36942 * 120.00017 * 95.50072 * 5 4 3 7 7 H 1.08001 * 119.99979 * 213.81369 * 6 5 4 8 8 C 1.38807 * 119.99847 * 33.80623 * 6 5 4 9 9 N 1.31619 * 120.00023 * 22.02379 * 8 6 5 10 10 Si 1.86803 * 119.99987 * 202.01957 * 8 6 5 11 11 H 1.48494 * 109.47032 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47175 * 119.99976 * 10 8 6 13 13 H 1.48501 * 109.47117 * 240.00280 * 10 8 6 14 14 C 1.46500 * 120.00351 * 275.49725 * 5 4 3 15 15 H 1.09006 * 110.66896 * 356.76843 * 14 5 4 16 16 C 1.54881 * 110.75826 * 233.33113 * 14 5 4 17 17 C 1.54272 * 104.19660 * 203.73982 * 16 14 5 18 18 C 1.53878 * 106.59707 * 23.60933 * 17 16 14 19 19 H 1.08989 * 110.07291 * 240.69147 * 18 17 16 20 20 C 1.50694 * 110.02936 * 119.28278 * 18 17 16 21 21 O 1.20825 * 120.00408 * 242.83193 * 20 18 17 22 22 O 1.34231 * 120.00372 * 62.83829 * 20 18 17 23 23 C 1.45199 * 117.00600 * 179.97438 * 22 20 18 24 24 C 1.52993 * 109.47250 * 179.97438 * 23 22 20 25 25 C 1.54269 * 106.59711 * 0.02562 * 18 17 16 26 26 H 1.08999 * 109.46806 * 59.99812 * 1 2 3 27 27 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46750 * 300.00169 * 1 2 3 29 29 H 1.08993 * 109.46811 * 239.99273 * 2 1 3 30 30 H 1.09002 * 109.46528 * 119.99748 * 2 1 3 31 31 H 1.09003 * 109.47895 * 59.99926 * 3 2 1 32 32 H 1.09002 * 109.47261 * 299.99299 * 3 2 1 33 33 H 1.08999 * 109.46806 * 300.00188 * 4 3 2 34 34 H 1.09003 * 109.46750 * 59.99831 * 4 3 2 35 35 H 0.97004 * 119.99859 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.48727 * 322.41849 * 16 14 5 37 37 H 1.09000 * 110.48941 * 85.06601 * 16 14 5 38 38 H 1.08993 * 110.03132 * 264.32516 * 17 16 14 39 39 H 1.09004 * 110.02930 * 142.89247 * 17 16 14 40 40 H 1.09007 * 109.46553 * 299.99580 * 23 22 20 41 41 H 1.08996 * 109.47172 * 59.99532 * 23 22 20 42 42 H 1.08996 * 109.47125 * 59.99858 * 24 23 22 43 43 H 1.09006 * 109.47300 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47183 * 299.99826 * 24 23 22 45 45 H 1.09002 * 110.48250 * 217.70823 * 25 18 17 46 46 H 1.08998 * 110.59705 * 95.12477 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.3944 3.4316 1.1789 7 1 4.2274 4.4909 1.3073 8 6 4.9492 2.6864 2.2102 9 7 5.5480 1.5440 1.9482 10 14 4.8462 3.3050 3.9698 11 1 4.1276 4.6042 3.9964 12 1 4.1119 2.3166 4.7998 13 1 6.2169 3.4858 4.5120 14 6 4.1875 3.5544 -1.2644 15 1 3.9352 2.9120 -2.1081 16 6 5.6149 4.1352 -1.4191 17 6 5.4383 5.3189 -2.3927 18 6 3.9668 5.7570 -2.2896 19 1 3.4768 5.6529 -3.2575 20 6 3.8856 7.1870 -1.8214 21 8 3.3515 7.4491 -0.7697 22 8 4.4065 8.1699 -2.5727 23 6 4.2915 9.5234 -2.0598 24 6 4.9381 10.4989 -3.0452 25 6 3.3008 4.8247 -1.2565 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6768 1.9563 -0.8901 33 1 3.9338 0.9284 0.8891 34 1 3.9330 0.9287 -0.8909 35 1 5.9361 1.0234 2.6689 36 1 5.9908 4.4850 -0.4576 37 1 6.2865 3.3891 -1.8438 38 1 5.6629 5.0015 -3.4109 39 1 6.0936 6.1407 -2.1040 40 1 3.2385 9.7765 -1.9355 41 1 4.7976 9.5913 -1.0969 42 1 4.4324 10.4311 -4.0083 43 1 4.8514 11.5150 -2.6604 44 1 5.9910 10.2456 -3.1691 45 1 2.2834 4.5812 -1.5625 46 1 3.3012 5.2848 -0.2684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257063669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -96.822138 kcal Electronic energy + Delta-G solvation = -23429.442170 eV Core-core repulsion = 20125.690870 eV Total energy + Delta-G solvation = -3303.751300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41068 -37.82117 -36.33528 -35.27685 -33.46042 -31.80952 -30.97771 -28.71396 -28.14389 -26.70692 -24.27073 -23.50854 -21.95832 -21.35217 -20.17553 -19.54270 -19.35951 -17.36449 -16.62503 -16.32043 -16.00941 -15.06248 -14.84850 -14.48746 -14.01320 -13.81925 -13.40770 -13.25113 -13.14239 -12.92634 -12.69339 -12.11954 -12.01094 -11.96115 -11.65278 -11.62281 -11.13222 -11.08334 -10.95067 -10.79857 -10.75847 -10.48358 -10.48259 -10.29447 -10.21479 -10.18620 -10.10044 -9.93752 -9.73329 -9.48041 -9.31724 -8.37925 -6.51728 -5.72707 -3.24923 2.49981 2.83999 3.39836 3.48928 3.53900 4.52878 4.79795 4.83870 4.93649 5.05713 5.11787 5.19414 5.34623 5.42509 5.50859 5.55200 5.65840 5.66845 5.75344 5.80679 5.85671 5.97040 6.07048 6.14440 6.18062 6.27098 6.31508 6.34873 6.41511 6.51388 6.57416 6.62254 6.67931 6.73653 6.88545 6.96285 6.98848 7.14912 7.29355 7.37207 7.83540 7.92248 8.03564 8.58340 9.27413 9.90883 10.45730 11.27929 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.004893 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.411708 B = 5720.959850 C = 6680.948059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.145 3.855 5 N -0.575 5.575 6 C -0.246 4.246 7 H 0.064 0.936 8 C 0.009 3.991 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.174 3.826 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.082 4.082 19 H 0.100 0.900 20 C 0.466 3.534 21 O -0.502 6.502 22 O -0.362 6.362 23 C 0.059 3.941 24 C -0.151 4.151 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.018 0.982 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 7.822 -10.665 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.175 4.175 4 C 0.019 3.981 5 N -0.293 5.293 6 C -0.376 4.376 7 H 0.082 0.918 8 C -0.190 4.190 9 N -0.532 5.532 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.218 1.218 14 C 0.066 3.934 15 H 0.075 0.925 16 C -0.171 4.171 17 C -0.148 4.148 18 C -0.102 4.102 19 H 0.118 0.882 20 C 0.309 3.691 21 O -0.389 6.389 22 O -0.280 6.280 23 C -0.015 4.015 24 C -0.208 4.208 25 C -0.168 4.168 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.365 7.813 -10.212 13.291 hybrid contribution -0.146 0.524 1.038 1.172 sum -3.512 8.337 -9.174 12.884 Atomic orbital electron populations 1.21774 0.97103 1.00387 1.01304 1.21474 0.94547 0.98666 1.01269 1.22218 1.00534 0.94116 1.00593 1.21034 0.89047 0.86240 1.01826 1.43856 1.73154 1.11250 1.01012 1.19020 1.34330 0.94152 0.90078 0.91849 1.25028 0.97218 0.97863 0.98933 1.70003 1.36760 1.15612 1.30866 0.86408 0.77346 0.78554 0.85669 1.20093 1.21533 1.21827 1.21288 0.91656 0.91103 0.89388 0.92464 1.22759 0.99736 0.95440 0.99134 1.22064 0.92626 0.99375 1.00688 1.21756 1.00217 0.86522 1.01719 0.88196 1.24042 0.74177 0.88513 0.82381 1.90656 1.40781 1.84150 1.23281 1.86522 1.73706 1.16897 1.50842 1.22959 1.01458 0.79087 0.98010 1.21787 1.01792 0.97643 0.99554 1.22948 0.98336 0.96506 0.98988 0.93341 0.93724 0.93110 0.92923 0.92377 0.92574 0.94179 0.88170 0.96371 0.93787 0.90058 0.92421 0.91370 0.92115 0.91539 0.91358 0.91639 0.90518 0.91490 0.92416 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.66 5.54 -26.73 -0.15 -2.81 16 4 C 0.14 3.32 5.21 -4.04 -0.02 3.29 16 5 N -0.58 -13.78 2.51 -163.39 -0.41 -14.19 16 6 C -0.25 -6.57 7.83 -15.06 -0.12 -6.69 16 7 H 0.06 1.76 6.74 -52.49 -0.35 1.41 16 8 C 0.01 0.24 4.93 -17.43 -0.09 0.16 16 9 N -0.89 -25.14 11.32 55.49 0.63 -24.52 16 10 Si 0.89 21.87 29.61 -169.99 -5.03 16.84 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.17 3.51 3.44 -65.93 -0.23 3.29 16 15 H 0.06 1.08 7.92 -51.93 -0.41 0.67 16 16 C -0.13 -2.52 6.34 -25.07 -0.16 -2.68 16 17 C -0.11 -1.68 6.43 -25.61 -0.16 -1.84 16 18 C -0.08 -1.29 3.41 -90.65 -0.31 -1.60 16 19 H 0.10 1.30 8.14 -51.94 -0.42 0.87 16 20 C 0.47 7.83 7.00 36.00 0.25 8.08 16 21 O -0.50 -10.03 15.15 -18.75 -0.28 -10.32 16 22 O -0.36 -5.23 10.19 -39.26 -0.40 -5.63 16 23 C 0.06 0.70 6.19 37.15 0.23 0.93 16 24 C -0.15 -1.26 10.29 37.15 0.38 -0.88 16 25 C -0.13 -2.41 5.71 -25.06 -0.14 -2.55 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.62 5.33 -51.93 -0.28 2.35 16 34 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.08 1.83 7.08 -51.93 -0.37 1.46 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 40 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 41 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 2.09 5.35 -51.93 -0.28 1.81 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -29.52 364.95 -8.70 -38.23 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.40 Total: 1.32 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.30 Total: -7.23 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.22 Total: -38.70 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.68 Total: -15.95 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.52 -8.70 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257063669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.597 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds