Wall clock time and date at job start Tue Mar 31 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 C 1.53006 * 109.46662 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46797 * 180.02562 * 4 3 2 6 6 C 1.36929 * 120.00295 * 89.99824 * 5 4 3 7 7 H 1.08005 * 119.99838 * 211.57676 * 6 5 4 8 8 C 1.38807 * 120.00337 * 31.30815 * 6 5 4 9 9 N 1.31621 * 120.00294 * 209.00620 * 8 6 5 10 10 Si 1.86801 * 119.99715 * 29.00047 * 8 6 5 11 11 H 1.48501 * 109.47293 * 0.50274 * 10 8 6 12 12 H 1.48505 * 109.46824 * 120.50376 * 10 8 6 13 13 H 1.48502 * 109.47261 * 240.49864 * 10 8 6 14 14 C 1.46504 * 119.99609 * 269.99472 * 5 4 3 15 15 H 1.09001 * 110.43393 * 1.02049 * 14 5 4 16 16 C 1.54884 * 110.48587 * 123.55922 * 14 5 4 17 17 C 1.55027 * 102.68458 * 156.51808 * 16 14 5 18 18 C 1.54267 * 104.28107 * 322.23260 * 17 16 14 19 19 H 1.09002 * 110.03376 * 264.23574 * 18 17 16 20 20 C 1.50700 * 110.03414 * 142.80388 * 18 17 16 21 21 O 1.20829 * 119.99998 * 242.83783 * 20 18 17 22 22 O 1.34226 * 120.00202 * 62.83259 * 20 18 17 23 23 C 1.45196 * 117.00113 * 180.02562 * 22 20 18 24 24 C 1.53004 * 109.47238 * 179.97438 * 23 22 20 25 25 C 1.53870 * 106.59449 * 23.51876 * 18 17 16 26 26 H 1.09006 * 109.46944 * 300.00115 * 1 2 3 27 27 H 1.08999 * 109.46961 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47104 * 239.99973 * 2 1 3 30 30 H 1.08999 * 109.46961 * 120.00028 * 2 1 3 31 31 H 1.08994 * 109.47508 * 60.00536 * 3 2 1 32 32 H 1.09002 * 109.46949 * 299.99467 * 3 2 1 33 33 H 1.08997 * 109.47473 * 59.99892 * 4 3 2 34 34 H 1.08999 * 109.46828 * 299.99801 * 4 3 2 35 35 H 0.96999 * 119.99901 * 359.97438 * 9 8 6 36 36 H 1.09001 * 110.75856 * 274.93418 * 16 14 5 37 37 H 1.09002 * 110.75981 * 38.30466 * 16 14 5 38 38 H 1.09006 * 110.52356 * 203.49033 * 17 16 14 39 39 H 1.09002 * 110.36983 * 80.90503 * 17 16 14 40 40 H 1.09002 * 109.47441 * 299.99871 * 23 22 20 41 41 H 1.09006 * 109.47315 * 60.00030 * 23 22 20 42 42 H 1.08997 * 109.46887 * 60.00129 * 24 23 22 43 43 H 1.09003 * 109.47100 * 179.97438 * 24 23 22 44 44 H 1.08992 * 109.47094 * 300.00313 * 24 23 22 45 45 H 1.09009 * 110.03349 * 240.71241 * 25 18 17 46 46 H 1.09006 * 110.03202 * 119.28783 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2871 3.4685 1.1861 7 1 4.1453 4.5369 1.2559 8 6 4.6956 2.7483 2.3001 9 7 4.3841 3.1704 3.5073 10 14 5.6875 1.1800 2.0861 11 1 5.9141 0.9310 0.6398 12 1 6.9955 1.3237 2.7746 13 1 4.9416 0.0384 2.6741 14 6 4.3021 3.5149 -1.2685 15 1 4.0532 2.8669 -2.1090 16 6 3.4840 4.8284 -1.3360 17 6 4.2834 5.6751 -2.3593 18 6 5.7597 5.3493 -2.0522 19 1 6.1789 6.1061 -1.3891 20 6 6.5520 5.2880 -3.3326 21 8 7.0788 4.2536 -3.6681 22 8 6.6725 6.3823 -4.1004 23 6 7.4496 6.2498 -5.3198 24 6 7.4740 7.5902 -6.0572 25 6 5.7715 3.9758 -1.3587 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9330 0.9287 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 3.8693 3.9850 3.6184 36 1 2.4734 4.6360 -1.6963 37 1 3.4614 5.3198 -0.3633 38 1 4.0885 6.7374 -2.2116 39 1 4.0309 5.3780 -3.3772 40 1 8.4685 5.9531 -5.0709 41 1 6.9964 5.4920 -5.9590 42 1 7.9269 8.3482 -5.4183 43 1 8.0577 7.4908 -6.9724 44 1 6.4550 7.8864 -6.3061 45 1 6.1965 4.0659 -0.3589 46 1 6.3504 3.2648 -1.9482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257063671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:08 Heat of formation + Delta-G solvation = -92.217655 kcal Electronic energy + Delta-G solvation = -23404.429222 eV Core-core repulsion = 20100.877587 eV Total energy + Delta-G solvation = -3303.551635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.52116 -38.00767 -36.50269 -35.48477 -33.54893 -31.89313 -31.35936 -28.90749 -28.34401 -26.74818 -23.97521 -23.54512 -22.20478 -21.46997 -20.51974 -19.93158 -18.93069 -17.65217 -16.98817 -16.51376 -16.29701 -15.46593 -14.94593 -14.53596 -14.14434 -13.88422 -13.70486 -13.26514 -13.12683 -12.99992 -12.86999 -12.28774 -12.19511 -12.05304 -11.89159 -11.76732 -11.45194 -11.28245 -10.99069 -10.89992 -10.73247 -10.57853 -10.52737 -10.39665 -10.33626 -10.26626 -10.00770 -9.93095 -9.85405 -9.42277 -9.05918 -8.31569 -6.92804 -6.24169 -3.27053 2.38493 2.76017 3.48410 3.58685 3.72187 4.63031 4.70296 4.76178 4.83094 4.95145 4.99505 5.09642 5.11523 5.35500 5.43660 5.46320 5.55234 5.58588 5.62432 5.70414 5.78386 5.88541 5.95421 5.99354 6.00390 6.17672 6.19693 6.22305 6.28636 6.33488 6.37630 6.40780 6.51680 6.55288 6.61443 6.67846 6.79073 6.96364 7.00271 7.08907 7.16760 7.92412 8.17412 8.53943 9.11079 9.70938 10.29288 11.11847 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.004542 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.455871 B = 6162.965844 C = 6881.703942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.134 4.134 4 C 0.152 3.848 5 N -0.596 5.596 6 C -0.349 4.349 7 H 0.066 0.934 8 C -0.001 4.001 9 N -0.909 5.909 10 Si 1.045 2.955 11 H -0.281 1.281 12 H -0.302 1.302 13 H -0.294 1.294 14 C 0.175 3.825 15 H 0.055 0.945 16 C -0.133 4.133 17 C -0.107 4.107 18 C -0.082 4.082 19 H 0.104 0.896 20 C 0.468 3.532 21 O -0.508 6.508 22 O -0.359 6.359 23 C 0.059 3.941 24 C -0.151 4.151 25 C -0.134 4.134 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 4.102 -15.328 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.174 4.174 4 C 0.027 3.973 5 N -0.316 5.316 6 C -0.478 4.478 7 H 0.083 0.917 8 C -0.204 4.204 9 N -0.546 5.546 10 Si 0.876 3.124 11 H -0.207 1.207 12 H -0.231 1.231 13 H -0.222 1.222 14 C 0.067 3.933 15 H 0.074 0.926 16 C -0.172 4.172 17 C -0.145 4.145 18 C -0.101 4.101 19 H 0.122 0.878 20 C 0.311 3.689 21 O -0.396 6.396 22 O -0.277 6.277 23 C -0.015 4.015 24 C -0.208 4.208 25 C -0.173 4.173 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.984 2.574 -14.615 14.872 hybrid contribution -0.525 1.201 -0.932 1.608 sum 0.459 3.774 -15.547 16.005 Atomic orbital electron populations 1.21750 0.96626 1.00613 1.01516 1.21537 0.95220 0.98393 1.01303 1.22164 0.98861 0.94628 1.01750 1.21051 0.91666 0.86398 0.98219 1.44206 1.74666 1.11168 1.01565 1.19898 1.46116 0.94396 0.87347 0.91685 1.26074 0.98324 1.04005 0.92038 1.70891 1.37805 1.23139 1.22792 0.83992 0.76909 0.76347 0.75114 1.20710 1.23112 1.22188 1.21154 0.91259 0.92236 0.88662 0.92635 1.22943 0.97867 0.97654 0.98760 1.22260 0.92012 1.00496 0.99711 1.21757 0.95622 1.02518 0.90219 0.87752 1.24108 0.78171 0.80921 0.85662 1.90616 1.45318 1.31559 1.72073 1.86544 1.67405 1.39499 1.34230 1.22974 0.95478 0.99094 0.83988 1.21792 1.03215 0.95995 0.99836 1.22768 1.00857 0.92395 1.01308 0.92868 0.93225 0.93538 0.92775 0.92316 0.91599 0.93217 0.94484 0.93874 0.92499 0.92417 0.90168 0.91217 0.92088 0.91447 0.91460 0.91525 0.90480 0.91512 0.89055 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.69 16 4 C 0.15 3.27 4.18 -4.04 -0.02 3.25 16 5 N -0.60 -13.63 2.21 -163.78 -0.36 -13.99 16 6 C -0.35 -9.19 8.19 -15.07 -0.12 -9.31 16 7 H 0.07 1.82 6.68 -52.48 -0.35 1.47 16 8 C 0.00 -0.03 5.22 -17.43 -0.09 -0.12 16 9 N -0.91 -27.33 13.71 55.49 0.76 -26.57 16 10 Si 1.04 26.08 25.56 -169.99 -4.35 21.73 16 11 H -0.28 -6.67 6.44 56.52 0.36 -6.31 16 12 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.18 3.44 3.38 -66.27 -0.22 3.21 16 15 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 16 C -0.13 -2.31 6.43 -24.67 -0.16 -2.47 16 17 C -0.11 -1.56 6.34 -25.00 -0.16 -1.72 16 18 C -0.08 -1.30 3.41 -90.66 -0.31 -1.61 16 19 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 20 C 0.47 7.47 7.10 36.01 0.26 7.72 16 21 O -0.51 -9.38 14.96 -18.75 -0.28 -9.66 16 22 O -0.36 -4.95 10.20 -39.25 -0.40 -5.35 16 23 C 0.06 0.64 6.19 37.16 0.23 0.87 16 24 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 25 C -0.13 -2.57 6.02 -25.62 -0.15 -2.72 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.74 7.95 -51.93 -0.41 0.32 16 34 H 0.04 1.01 3.32 -51.93 -0.17 0.83 16 35 H 0.26 7.90 8.73 -40.82 -0.36 7.55 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.58 6.42 -51.93 -0.33 1.24 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.84 7.85 -51.93 -0.41 0.44 16 40 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 41 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.97 7.07 -51.92 -0.37 1.60 16 46 H 0.07 1.49 6.40 -51.93 -0.33 1.16 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -29.95 359.80 -7.82 -37.78 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.31 Total: 0.85 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -0.31 Total: -10.21 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.40 Total: -40.57 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.68 Total: -15.01 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.35 Total: 21.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.95 -7.82 -37.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257063671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.442 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds