Wall clock time and date at job start Tue Mar 31 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47631 * 2 1 4 4 H 1.09000 * 109.47539 * 174.08579 * 3 2 1 5 5 C 1.50705 * 109.46688 * 54.08582 * 3 2 1 6 6 H 1.08002 * 119.99606 * 240.00070 * 5 3 2 7 7 C 1.37876 * 119.99996 * 60.00156 * 5 3 2 8 8 N 1.31511 * 120.00268 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99847 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46629 * 90.00389 * 9 7 5 11 11 H 1.48501 * 109.46924 * 210.00214 * 9 7 5 12 12 H 1.48495 * 109.47141 * 330.00262 * 9 7 5 13 13 N 1.46898 * 109.47048 * 294.08682 * 3 2 1 14 14 C 1.46893 * 110.99988 * 275.78341 * 13 3 2 15 15 C 1.53007 * 109.47174 * 176.22963 * 14 13 3 16 16 H 1.08996 * 109.48247 * 305.03616 * 15 14 13 17 17 C 1.53073 * 109.48587 * 184.99564 * 15 14 13 18 18 C 1.53190 * 109.27846 * 181.93952 * 17 15 14 19 19 C 1.53290 * 108.94766 * 57.45943 * 18 17 15 20 20 C 1.52493 * 109.19867 * 303.96064 * 19 18 17 21 21 C 1.54305 * 110.00974 * 178.28855 * 20 19 18 22 22 C 1.55108 * 101.98149 * 139.12759 * 21 20 19 23 23 O 1.44425 * 103.55360 * 323.38682 * 22 21 20 24 24 C 1.43877 * 106.99359 * 39.75877 * 23 22 21 25 25 O 1.42224 * 110.93547 * 56.11719 * 20 19 18 26 26 H 1.09004 * 109.46674 * 58.55645 * 1 2 3 27 27 H 1.08994 * 109.47294 * 178.55553 * 1 2 3 28 28 H 1.08995 * 109.46909 * 298.56158 * 1 2 3 29 29 H 1.09002 * 109.47305 * 239.99960 * 2 1 3 30 30 H 1.09005 * 109.46875 * 120.00467 * 2 1 3 31 31 H 0.96999 * 120.00611 * 180.02562 * 8 7 5 32 32 H 1.00906 * 110.99800 * 39.73624 * 13 3 2 33 33 H 1.08992 * 109.47616 * 56.23089 * 14 13 3 34 34 H 1.09007 * 109.47124 * 296.22360 * 14 13 3 35 35 H 1.09003 * 109.50223 * 62.00501 * 17 15 14 36 36 H 1.09000 * 109.50921 * 301.88261 * 17 15 14 37 37 H 1.08993 * 109.56264 * 297.62179 * 18 17 15 38 38 H 1.08997 * 109.64716 * 177.34733 * 18 17 15 39 39 H 1.09003 * 109.51515 * 184.03810 * 19 18 17 40 40 H 1.09005 * 109.51427 * 63.87647 * 19 18 17 41 41 H 1.08994 * 110.92920 * 257.29683 * 21 20 19 42 42 H 1.08997 * 110.92845 * 20.95728 * 21 20 19 43 43 H 1.09009 * 110.60544 * 204.87245 * 22 21 20 44 44 H 1.08993 * 110.60770 * 81.91177 * 22 21 20 45 45 H 1.09006 * 109.90657 * 92.95950 * 24 23 22 46 46 H 1.08992 * 109.91151 * 214.21925 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1250 1.4443 0.1059 5 6 1.4218 2.1938 1.1508 6 1 0.8150 3.0670 0.9617 7 6 1.6309 1.7666 2.4449 8 7 2.3702 0.7036 2.6751 9 14 0.8650 2.6984 3.8713 10 1 -0.4774 2.1359 4.1662 11 1 1.7311 2.5669 5.0704 12 1 0.7325 4.1329 3.5113 13 7 1.6705 2.0925 -1.2644 14 6 2.6512 1.7936 -2.3164 15 6 2.1848 2.4079 -3.6378 16 1 1.1793 2.0556 -3.8677 17 6 3.1403 1.9926 -4.7593 18 6 2.6970 2.6492 -6.0705 19 6 2.6656 4.1699 -5.8799 20 6 1.7562 4.5091 -4.7038 21 6 1.7445 6.0340 -4.4681 22 6 0.2476 6.3012 -4.1620 23 8 -0.4456 5.3870 -5.0393 24 6 0.2986 4.1557 -5.0365 25 8 2.1765 3.8336 -3.5249 26 1 -0.3633 0.5361 -0.8768 27 1 -0.3633 -1.0273 -0.0259 28 1 -0.3633 0.4913 0.9026 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.5170 0.4028 3.5855 32 1 0.7405 1.8248 -1.5503 33 1 2.7439 0.7137 -2.4305 34 1 3.6185 2.2144 -2.0415 35 1 3.1214 0.9085 -4.8707 36 1 4.1519 2.3162 -4.5141 37 1 1.7018 2.2944 -6.3380 38 1 3.4004 2.3954 -6.8635 39 1 2.2827 4.6423 -6.7845 40 1 3.6734 4.5324 -5.6773 41 1 2.3698 6.3011 -3.6162 42 1 2.0602 6.5689 -5.3638 43 1 -0.0142 7.3326 -4.3983 44 1 0.0233 6.0768 -3.1192 45 1 -0.1020 3.4815 -4.2794 46 1 0.2453 3.6876 -6.0194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307825648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:03 Heat of formation + Delta-G solvation = -101.734059 kcal Electronic energy + Delta-G solvation = -24017.076648 eV Core-core repulsion = 20713.112351 eV Total energy + Delta-G solvation = -3303.964297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63637 -37.89402 -36.33889 -33.70036 -33.33115 -31.86848 -30.56757 -29.47032 -27.63214 -26.30476 -24.76677 -23.38147 -23.06464 -21.87867 -21.19577 -19.45799 -19.05436 -17.09992 -16.55307 -16.06309 -15.65594 -15.23997 -14.76535 -14.65051 -14.50562 -14.05362 -13.66827 -13.56004 -13.28479 -13.00268 -12.64026 -12.41250 -12.28836 -12.17557 -11.85600 -11.70101 -11.50199 -11.33655 -11.13864 -11.03061 -10.91622 -10.78102 -10.52564 -10.48074 -10.13474 -9.95366 -9.75596 -9.63751 -9.50147 -9.16367 -8.91130 -8.30298 -7.11499 -5.93028 -3.93724 3.35560 3.42259 3.47500 3.65376 4.01080 4.40643 4.47892 4.59424 4.68753 4.76493 4.90741 4.98183 5.12648 5.23036 5.28949 5.37608 5.38894 5.49686 5.61732 5.68770 5.69245 5.70593 5.76185 5.84685 5.89246 5.95342 5.96974 6.02014 6.14406 6.21064 6.36076 6.38825 6.47509 6.59983 6.79185 6.90667 7.29901 7.32318 7.50894 7.55884 7.72787 7.94770 8.33388 8.60396 8.68794 9.12292 9.69733 11.14267 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.004576 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.840554 B = 6116.844336 C = 6861.084213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.068 3.932 15 C 0.093 3.907 16 H 0.053 0.947 17 C -0.151 4.151 18 C -0.123 4.123 19 C -0.137 4.137 20 C 0.085 3.915 21 C -0.141 4.141 22 C 0.047 3.953 23 O -0.379 6.379 24 C 0.025 3.975 25 O -0.337 6.337 26 H 0.029 0.971 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.009 0.991 30 H 0.092 0.908 31 H 0.258 0.742 32 H 0.323 0.677 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 4.880 -17.520 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.062 4.062 15 C 0.035 3.965 16 H 0.071 0.929 17 C -0.190 4.190 18 C -0.161 4.161 19 C -0.175 4.175 20 C 0.044 3.956 21 C -0.179 4.179 22 C -0.030 4.030 23 O -0.298 6.298 24 C -0.052 4.052 25 O -0.255 6.255 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.224 5.524 -17.132 18.002 hybrid contribution -0.414 -0.851 0.515 1.077 sum -0.189 4.673 -16.617 17.263 Atomic orbital electron populations 1.21561 0.97694 0.97913 1.01283 1.22118 0.95022 1.01288 1.00098 1.19206 0.96035 0.88474 0.85566 0.94988 1.21068 1.30173 1.11379 0.89704 0.92050 1.24904 0.95623 0.95212 0.98671 1.69881 1.39406 1.24302 1.20225 0.86585 0.78934 0.80443 0.81976 1.20914 1.21482 1.19915 1.60799 1.03428 1.63130 1.03219 1.21912 0.98189 0.96160 0.89934 1.22254 0.97451 0.81382 0.95449 0.92889 1.22202 1.00815 1.00911 0.95023 1.21651 1.01696 0.95000 0.97706 1.22077 1.00776 0.96739 0.97878 1.22302 0.92953 0.93291 0.87064 1.23062 0.98261 0.93109 1.03463 1.23615 0.90159 0.94096 0.95111 1.88859 1.50117 1.23918 1.66910 1.23856 0.91234 0.88074 1.02085 1.88106 1.87112 1.17793 1.32513 0.95238 0.95966 0.91499 0.97220 0.88972 0.93212 0.85881 0.94915 0.91008 0.90918 0.90833 0.91856 0.91426 0.90903 0.90750 0.88658 0.89706 0.89079 0.91155 0.91218 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.39 37.16 0.35 -2.38 16 2 C -0.15 -3.40 5.50 -26.73 -0.15 -3.55 16 3 C 0.21 5.33 2.33 -68.86 -0.16 5.17 16 4 H 0.03 0.88 7.86 -51.93 -0.41 0.48 16 5 C -0.48 -13.24 7.35 -34.44 -0.25 -13.49 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.47 11.39 55.43 0.63 -24.84 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.40 6.20 -107.95 -0.67 -15.07 16 14 C 0.07 1.22 5.15 -3.82 -0.02 1.20 16 15 C 0.09 1.36 2.50 -26.69 -0.07 1.29 16 16 H 0.05 0.77 6.64 -51.93 -0.34 0.42 16 17 C -0.15 -1.76 5.40 -26.60 -0.14 -1.91 16 18 C -0.12 -1.20 5.81 -26.48 -0.15 -1.36 16 19 C -0.14 -1.40 4.59 -26.84 -0.12 -1.53 16 20 C 0.08 1.06 0.96 -89.87 -0.09 0.98 16 21 C -0.14 -1.61 6.43 -24.93 -0.16 -1.77 16 22 C 0.05 0.56 7.73 38.27 0.30 0.86 16 23 O -0.38 -5.30 11.53 -35.23 -0.41 -5.70 16 24 C 0.02 0.32 6.17 37.48 0.23 0.55 16 25 O -0.34 -5.34 9.77 -35.23 -0.34 -5.68 16 26 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.58 7.05 -51.93 -0.37 1.22 16 29 H 0.01 0.20 7.24 -51.93 -0.38 -0.18 16 30 H 0.09 2.42 6.25 -51.93 -0.32 2.10 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.32 6.63 6.55 -39.29 -0.26 6.38 16 33 H 0.03 0.57 7.23 -51.93 -0.38 0.19 16 34 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.59 6.94 -51.93 -0.36 0.23 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 42 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 43 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.99 6.73 -51.93 -0.35 0.64 16 46 H 0.08 0.93 6.67 -51.93 -0.35 0.59 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -29.17 345.15 -9.16 -38.33 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.02 Total: 5.70 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.53 Total: -14.49 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.04 Total: -39.91 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.75 Total: -11.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.17 -9.16 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307825648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.403 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds