Wall clock time and date at job start Tue Mar 31 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99983 * 2 1 4 4 H 1.08995 * 110.05912 * 28.58571 * 3 2 1 5 5 C 1.54274 * 110.03217 * 267.16468 * 3 2 1 6 6 C 1.54889 * 104.19660 * 217.10627 * 5 3 2 7 7 C 1.54893 * 102.74779 * 37.94171 * 6 5 3 8 8 C 1.53879 * 110.03472 * 150.00099 * 3 2 1 9 9 H 1.08995 * 110.03122 * 238.61667 * 8 3 2 10 10 C 1.50704 * 110.02976 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00005 * 52.34945 * 10 8 3 12 12 N 1.34773 * 119.99784 * 232.35520 * 10 8 3 13 13 C 1.46503 * 119.99799 * 184.87223 * 12 10 8 14 14 C 1.50699 * 109.47199 * 89.99788 * 13 12 10 15 15 H 1.08001 * 119.99807 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99896 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99958 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99591 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47029 * 90.00588 * 18 16 14 20 20 H 1.48506 * 109.46829 * 209.99630 * 18 16 14 21 21 H 1.48495 * 109.47707 * 330.00040 * 18 16 14 22 22 C 1.46503 * 120.00297 * 4.86587 * 12 10 8 23 23 C 1.53000 * 109.46885 * 96.26936 * 22 12 10 24 24 C 1.52995 * 109.47175 * 174.49195 * 23 22 12 25 25 C 1.53004 * 109.47404 * 294.49206 * 23 22 12 26 26 H 1.09003 * 109.47246 * 300.00084 * 1 2 3 27 27 H 1.08994 * 109.47077 * 60.00055 * 1 2 3 28 28 H 1.08995 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.08998 * 110.48139 * 335.78505 * 5 3 2 30 30 H 1.08998 * 110.48243 * 98.42454 * 5 3 2 31 31 H 1.09003 * 110.75241 * 279.63027 * 6 5 3 32 32 H 1.08992 * 110.91277 * 156.33069 * 6 5 3 33 33 H 1.09000 * 110.48118 * 203.37633 * 7 6 5 34 34 H 1.09000 * 110.59564 * 80.79252 * 7 6 5 35 35 H 1.08998 * 109.46835 * 209.99490 * 13 12 10 36 36 H 1.08996 * 109.47416 * 329.99363 * 13 12 10 37 37 H 0.97002 * 119.99771 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.47303 * 216.27084 * 22 12 10 39 39 H 1.09000 * 109.47125 * 336.27370 * 22 12 10 40 40 H 1.09005 * 109.46844 * 54.49280 * 23 22 12 41 41 H 1.09001 * 109.47649 * 60.00154 * 24 23 22 42 42 H 1.08998 * 109.47584 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.47315 * 299.99919 * 24 23 22 44 44 H 1.08992 * 109.46996 * 305.10775 * 25 23 22 45 45 H 1.08999 * 109.46611 * 65.10704 * 25 23 22 46 46 H 1.09004 * 109.47067 * 185.10534 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2906 1.7591 -1.4476 6 6 3.6253 2.5388 -1.3496 7 6 4.4266 1.7155 -0.3107 8 6 3.3684 1.2778 0.7228 9 1 3.3578 1.9709 1.5639 10 6 3.6670 -0.1176 1.2073 11 8 3.6106 -1.0522 0.4363 12 7 3.9965 -0.3270 2.4972 13 6 4.3905 -1.6653 2.9446 14 6 5.8821 -1.8244 2.8001 15 1 6.4771 -1.0100 2.4140 16 6 6.4871 -3.0094 3.1618 17 7 5.7627 -4.0005 3.6333 18 14 8.3359 -3.2069 2.9819 19 1 9.0044 -2.7713 4.2343 20 1 8.6582 -4.6325 2.7189 21 1 8.8150 -2.3741 1.8496 22 6 3.9610 0.7836 3.4519 23 6 2.6263 0.7707 4.1998 24 6 2.6424 1.8434 5.2906 25 6 1.4887 1.0587 3.2180 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.4007 0.8954 -2.1034 30 1 1.4932 2.4110 -1.8043 31 1 3.4544 3.5534 -0.9895 32 1 4.1392 2.5530 -2.3106 33 1 5.1881 2.3357 0.1622 34 1 4.8833 0.8448 -0.7813 35 1 4.1108 -1.7958 3.9900 36 1 3.8844 -2.4152 2.3368 37 1 6.1884 -4.8343 3.8874 38 1 4.7781 0.6760 4.1652 39 1 4.0681 1.7268 2.9163 40 1 2.4743 -0.2081 4.6549 41 1 2.7943 2.8221 4.8355 42 1 1.6917 1.8339 5.8237 43 1 3.4528 1.6381 5.9901 44 1 1.6872 1.9950 2.6965 45 1 1.4195 0.2470 2.4939 46 1 0.5489 1.1394 3.7644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335740852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:17 Heat of formation + Delta-G solvation = -94.792975 kcal Electronic energy + Delta-G solvation = -24690.897604 eV Core-core repulsion = 21387.234295 eV Total energy + Delta-G solvation = -3303.663309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98142 -37.77839 -36.14651 -35.50528 -33.49484 -32.14958 -29.50797 -28.13265 -27.21728 -26.98938 -25.85315 -25.31103 -23.05775 -20.79133 -20.65928 -19.97559 -18.00125 -17.28490 -16.31126 -15.85352 -15.64032 -15.00727 -14.86479 -14.45806 -14.33551 -14.07121 -13.80358 -13.63977 -13.24061 -12.73145 -12.48367 -12.28763 -12.14711 -11.89653 -11.64417 -11.49913 -11.31307 -11.15866 -11.08435 -10.99561 -10.82822 -10.79517 -10.70198 -10.63547 -10.45658 -10.42032 -10.15565 -10.01815 -9.49788 -9.30653 -8.52021 -8.35818 -7.41789 -5.96258 -4.00617 3.33880 3.40469 3.44686 3.65569 3.94581 4.16536 4.51125 4.63249 4.76028 4.97074 5.10990 5.19770 5.24603 5.28368 5.37259 5.43845 5.44977 5.49289 5.57645 5.63341 5.70833 5.74542 5.76585 5.80104 5.86814 5.92660 5.95020 5.97732 6.08148 6.09737 6.15571 6.27996 6.29657 6.35018 6.48670 6.56865 6.65235 7.21843 7.49027 7.61145 7.73756 8.02674 8.34816 8.65859 9.01341 9.38453 9.65100 11.11478 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.006122 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.141936 B = 4572.306858 C = 5270.543071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.101 3.899 4 H 0.062 0.938 5 C -0.145 4.145 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.124 4.124 9 H 0.095 0.905 10 C 0.527 3.473 11 O -0.520 6.520 12 N -0.602 5.602 13 C 0.249 3.751 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.115 3.885 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.150 4.150 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.393 15.928 -3.254 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.267 6.267 3 C 0.042 3.958 4 H 0.080 0.920 5 C -0.183 4.183 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.145 4.145 9 H 0.113 0.887 10 C 0.313 3.687 11 O -0.395 6.395 12 N -0.333 5.333 13 C 0.130 3.870 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.010 4.010 23 C -0.136 4.136 24 C -0.200 4.200 25 C -0.207 4.207 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.290 15.022 -3.597 18.025 hybrid contribution 0.799 0.099 0.134 0.817 sum -8.490 15.121 -3.464 17.684 Atomic orbital electron populations 1.22772 0.82633 1.02542 0.99037 1.88348 1.17965 1.25795 1.94566 1.22597 0.93167 0.85261 0.94774 0.92039 1.22894 0.97379 1.00432 0.97561 1.22390 0.95713 0.98223 0.99350 1.22292 0.96612 1.00349 0.95525 1.22349 0.95429 0.97668 0.99089 0.88689 1.19696 0.77236 0.89385 0.82350 1.90648 1.50797 1.43702 1.54377 1.48160 1.66220 1.11485 1.07481 1.19165 0.94975 0.77811 0.95062 1.21480 0.92710 0.99433 1.42594 0.92597 1.24930 0.98289 0.95649 0.95272 1.69941 1.35407 1.04374 1.43721 0.86540 0.85496 0.77341 0.78290 1.20727 1.21153 1.19951 1.21550 0.96650 0.90067 0.92711 1.21557 0.96023 0.99928 0.96110 1.21765 1.01546 0.98351 0.98316 1.21995 0.97651 1.01458 0.99611 0.94534 0.94724 0.89896 0.90039 0.91887 0.91587 0.91214 0.91232 0.90166 0.95443 0.93905 0.92852 0.90478 0.91517 0.90526 0.93024 0.92967 0.92500 0.93389 0.91564 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.78 101.05 1.09 1.44 16 2 O -0.35 -6.00 6.97 -57.71 -0.40 -6.40 16 3 C 0.10 1.43 2.37 -25.61 -0.06 1.37 16 4 H 0.06 0.73 7.24 -51.93 -0.38 0.36 16 5 C -0.14 -1.80 6.56 -25.07 -0.16 -1.97 16 6 C -0.12 -1.35 6.91 -24.74 -0.17 -1.53 16 7 C -0.11 -1.60 6.34 -25.07 -0.16 -1.76 16 8 C -0.12 -1.96 1.98 -90.65 -0.18 -2.14 16 9 H 0.10 1.31 4.06 -51.93 -0.21 1.10 16 10 C 0.53 11.35 4.60 -10.98 -0.05 11.30 16 11 O -0.52 -13.67 14.80 -16.92 -0.25 -13.92 16 12 N -0.60 -13.10 2.26 -175.06 -0.40 -13.50 16 13 C 0.25 6.71 5.22 -5.19 -0.03 6.68 16 14 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 18 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.11 1.94 4.86 -4.04 -0.02 1.92 16 23 C -0.12 -1.70 3.11 -90.62 -0.28 -1.98 16 24 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 25 C -0.15 -2.02 7.48 37.16 0.28 -1.75 16 26 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.16 8.08 -51.93 -0.42 0.75 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 35 H 0.03 0.75 7.98 -51.93 -0.41 0.34 16 36 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 39 H 0.07 0.96 5.49 -51.93 -0.29 0.67 16 40 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.57 6.11 -51.93 -0.32 0.25 16 45 H 0.07 1.08 5.69 -51.93 -0.30 0.78 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -33.96 353.92 -7.96 -41.92 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.13 Total: -0.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.17 Total: -3.51 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.34 Total: -39.95 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.65 Total: -20.32 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.96 -7.96 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335740852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.876 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds