Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99912 * 2 1 4 4 H 1.09001 * 110.01423 * 331.39246 * 3 2 1 5 5 C 1.54265 * 110.03247 * 92.83319 * 3 2 1 6 6 C 1.54891 * 104.19568 * 95.67281 * 5 3 2 7 7 C 1.54890 * 102.74597 * 37.94060 * 6 5 3 8 8 C 1.53870 * 110.02882 * 209.99915 * 3 2 1 9 9 H 1.09005 * 110.03383 * 0.02562 * 8 3 2 10 10 C 1.50699 * 110.03075 * 121.43254 * 8 3 2 11 11 O 1.21277 * 120.00483 * 25.47384 * 10 8 3 12 12 N 1.34782 * 119.99862 * 205.47650 * 10 8 3 13 13 C 1.46509 * 119.99583 * 185.10072 * 12 10 8 14 14 C 1.50694 * 109.47028 * 89.99957 * 13 12 10 15 15 H 1.08005 * 120.00256 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00271 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00063 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46909 * 90.00146 * 18 16 14 20 20 H 1.48495 * 109.47349 * 209.99804 * 18 16 14 21 21 H 1.48497 * 109.47169 * 330.00038 * 18 16 14 22 22 C 1.46494 * 120.00054 * 5.09847 * 12 10 8 23 23 C 1.53002 * 109.47199 * 84.29343 * 22 12 10 24 24 C 1.53003 * 109.47279 * 64.99617 * 23 22 12 25 25 C 1.52996 * 109.47229 * 185.00100 * 23 22 12 26 26 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47289 * 59.99998 * 1 2 3 28 28 H 1.08996 * 109.46815 * 299.99939 * 1 2 3 29 29 H 1.08998 * 110.48661 * 214.35518 * 5 3 2 30 30 H 1.09004 * 110.48329 * 336.99532 * 5 3 2 31 31 H 1.09001 * 110.75331 * 279.63177 * 6 5 3 32 32 H 1.08995 * 110.91609 * 156.33238 * 6 5 3 33 33 H 1.09005 * 110.48286 * 203.37844 * 7 6 5 34 34 H 1.09001 * 110.59557 * 80.79261 * 7 6 5 35 35 H 1.09001 * 109.46658 * 209.99619 * 13 12 10 36 36 H 1.08999 * 109.47331 * 329.99861 * 13 12 10 37 37 H 0.96998 * 120.00308 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.47040 * 204.29039 * 22 12 10 39 39 H 1.09001 * 109.47131 * 324.28990 * 22 12 10 40 40 H 1.08998 * 109.46989 * 305.00292 * 23 22 12 41 41 H 1.08995 * 109.47357 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.47391 * 300.00718 * 24 23 22 43 43 H 1.09006 * 109.46609 * 60.00062 * 24 23 22 44 44 H 1.08996 * 109.47540 * 59.99729 * 25 23 22 45 45 H 1.08995 * 109.47161 * 180.02562 * 25 23 22 46 46 H 1.09003 * 109.46657 * 299.99720 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3406 2.0120 -0.4904 5 6 2.2907 1.7591 1.4475 6 6 3.7775 1.3922 1.6793 7 6 4.4267 1.7155 0.3107 8 6 3.3684 1.2777 -0.7228 9 1 3.5839 0.2686 -1.0740 10 6 3.3542 2.2369 -1.8851 11 8 2.6050 3.1905 -1.8753 12 7 4.1742 2.0349 -2.9355 13 6 4.2419 3.0253 -4.0129 14 6 5.3103 4.0398 -3.6962 15 1 5.8815 3.9556 -2.7834 16 6 5.5586 5.0756 -4.5717 17 7 6.4913 5.9608 -4.2956 18 14 4.5712 5.2210 -6.1507 19 1 3.3629 6.0483 -5.9045 20 1 5.4051 5.8625 -7.1987 21 1 4.1608 3.8678 -6.6042 22 6 4.9978 0.8251 -2.9998 23 6 4.1744 -0.3216 -3.5899 24 6 3.8164 0.0020 -5.0418 25 6 4.9921 -1.6139 -3.5421 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 2.1433 2.8346 1.5456 30 1 1.6512 1.2202 2.1468 31 1 3.8817 0.3333 1.9157 32 1 4.2117 2.0070 2.4677 33 1 5.3462 1.1448 0.1803 34 1 4.6260 2.7836 0.2236 35 1 4.4823 2.5255 -4.9513 36 1 3.2793 3.5282 -4.1052 37 1 6.6663 6.6893 -4.9117 38 1 5.8670 1.0104 -3.6308 39 1 5.3279 0.5565 -1.9963 40 1 3.2603 -0.4484 -3.0100 41 1 3.2295 -0.8146 -5.4620 42 1 3.2339 0.9227 -5.0759 43 1 4.7306 0.1289 -5.6217 44 1 5.2472 -1.8445 -2.5078 45 1 4.4058 -2.4306 -3.9628 46 1 5.9063 -1.4870 -4.1221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335740853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -101.234854 kcal Electronic energy + Delta-G solvation = -24309.222252 eV Core-core repulsion = 21005.279602 eV Total energy + Delta-G solvation = -3303.942650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08261 -38.15183 -36.40623 -35.51609 -33.61676 -32.28543 -29.75329 -28.17808 -27.79380 -26.93749 -26.18788 -25.49585 -22.80574 -20.83909 -20.46649 -20.05641 -18.27772 -17.19516 -16.92117 -16.25060 -15.61082 -15.24423 -14.97132 -14.65123 -14.47364 -14.10488 -13.91419 -13.67305 -13.40299 -12.78391 -12.60101 -12.40771 -12.14166 -12.06466 -11.84293 -11.69847 -11.50306 -11.41945 -11.29608 -11.04295 -11.02916 -10.87788 -10.67911 -10.63614 -10.48577 -10.35981 -10.31572 -10.10007 -9.53491 -9.49994 -8.94575 -8.58263 -7.66910 -6.08656 -4.06972 3.28556 3.31049 3.34668 3.36767 3.58772 4.06080 4.39637 4.61070 4.72039 5.01137 5.03731 5.13609 5.20230 5.26016 5.29953 5.35008 5.40441 5.49856 5.54365 5.62109 5.64064 5.68904 5.76873 5.80930 5.84747 5.90420 5.96483 6.03578 6.05398 6.09105 6.11452 6.13137 6.23087 6.25677 6.45269 6.51194 6.55931 6.76156 6.96938 7.28823 7.38781 7.62476 8.27912 8.47684 8.92872 8.99481 9.52145 11.04717 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.005946 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.191250 B = 4707.777002 C = 5409.906964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.083 0.917 5 C -0.142 4.142 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.114 4.114 9 H 0.103 0.897 10 C 0.519 3.481 11 O -0.545 6.545 12 N -0.587 5.587 13 C 0.214 3.786 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.874 3.126 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.115 3.885 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -15.352 7.150 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.035 3.965 4 H 0.101 0.899 5 C -0.180 4.180 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.306 3.694 11 O -0.423 6.423 12 N -0.316 5.316 13 C 0.094 3.906 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.009 4.009 23 C -0.137 4.137 24 C -0.204 4.204 25 C -0.200 4.200 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.948 -14.824 7.039 17.821 hybrid contribution -0.528 0.443 -0.917 1.147 sum -7.476 -14.381 6.123 17.326 Atomic orbital electron populations 1.22746 0.81501 1.02200 1.00037 1.87869 1.19305 1.28224 1.95010 1.22712 0.94240 0.84379 0.95213 0.89880 1.22823 0.97313 1.01470 0.96348 1.22434 0.94911 1.01264 0.96843 1.22261 0.96801 1.02541 0.93034 1.22013 0.95734 1.00659 0.95136 0.87938 1.20130 0.80345 0.85851 0.83119 1.90629 1.40531 1.31656 1.79527 1.47827 1.40751 1.21070 1.21981 1.19724 0.98153 0.87550 0.85219 1.21350 1.18267 1.09017 1.08007 0.90745 1.24840 0.94903 0.95208 0.97981 1.69894 1.31996 1.14587 1.37146 0.86887 0.80560 0.78949 0.83550 1.19964 1.21073 1.19008 1.21591 0.94028 0.84057 1.01238 1.21637 0.99318 0.95079 0.97625 1.21869 1.01599 1.01462 0.95479 1.21762 1.00048 0.96599 1.01632 0.89972 0.94022 0.94254 0.90565 0.91192 0.91238 0.91349 0.90801 0.90438 0.94901 0.94723 0.92597 0.89638 0.91333 0.91167 0.93383 0.92050 0.92531 0.92694 0.92805 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.44 16 2 O -0.39 -5.39 10.25 -35.23 -0.36 -5.75 16 3 C 0.09 1.39 2.91 -25.62 -0.07 1.32 16 4 H 0.08 1.42 6.38 -51.93 -0.33 1.09 16 5 C -0.14 -1.83 6.57 -25.07 -0.16 -2.00 16 6 C -0.12 -1.41 6.91 -24.74 -0.17 -1.59 16 7 C -0.11 -1.57 6.11 -25.07 -0.15 -1.73 16 8 C -0.11 -1.82 2.21 -90.66 -0.20 -2.02 16 9 H 0.10 1.51 5.44 -51.93 -0.28 1.23 16 10 C 0.52 10.69 6.60 -10.98 -0.07 10.62 16 11 O -0.55 -13.37 15.13 5.56 0.08 -13.28 16 12 N -0.59 -12.05 2.19 -175.06 -0.38 -12.43 16 13 C 0.21 5.21 3.35 -5.19 -0.02 5.20 16 14 C -0.53 -15.08 9.94 -34.44 -0.34 -15.43 16 15 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 18 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 19 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 22 C 0.12 1.86 4.46 -4.04 -0.02 1.84 16 23 C -0.12 -1.60 2.82 -90.62 -0.26 -1.85 16 24 C -0.15 -2.11 8.34 37.16 0.31 -1.80 16 25 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 34 H 0.08 1.31 7.85 -51.93 -0.41 0.91 16 35 H 0.03 0.77 5.69 -51.93 -0.30 0.47 16 36 H 0.03 0.91 6.79 -51.93 -0.35 0.56 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 39 H 0.07 0.98 6.09 -51.93 -0.32 0.66 16 40 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -32.88 357.01 -7.16 -40.04 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.17 Total: 1.09 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 0.18 Total: -5.17 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.39 Total: -39.29 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.28 Total: -19.04 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.88 -7.16 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335740853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds