Wall clock time and date at job start Tue Mar 31 2020 07:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 H 1.09003 * 109.46688 * 54.99809 * 3 2 1 5 5 C 1.52999 * 109.46888 * 295.00160 * 3 2 1 6 6 C 1.52995 * 109.47019 * 175.00116 * 3 2 1 7 7 C 1.53002 * 109.47274 * 185.00111 * 6 3 2 8 8 C 1.52995 * 109.47274 * 179.97438 * 7 6 3 9 9 C 1.53002 * 109.47274 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47382 * 179.97438 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 H 1.09001 * 109.47671 * 59.99925 * 1 2 3 26 26 H 1.08997 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47385 * 299.99572 * 1 2 3 28 28 H 1.08995 * 109.47109 * 240.00272 * 2 1 3 29 29 H 1.08998 * 109.46969 * 120.00238 * 2 1 3 30 30 H 1.08994 * 109.47141 * 299.99666 * 5 3 2 31 31 H 1.09000 * 109.47137 * 60.00538 * 5 3 2 32 32 H 1.09011 * 109.46832 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.47228 * 65.00026 * 6 3 2 34 34 H 1.09001 * 109.47289 * 305.00169 * 6 3 2 35 35 H 1.09006 * 109.46821 * 59.99672 * 7 6 3 36 36 H 1.09001 * 109.47010 * 300.00228 * 7 6 3 37 37 H 1.08998 * 109.47228 * 59.99914 * 8 7 6 38 38 H 1.09001 * 109.47289 * 300.00058 * 8 7 6 39 39 H 1.09006 * 109.46821 * 59.99672 * 9 8 7 40 40 H 1.09001 * 109.47010 * 300.00228 * 9 8 7 41 41 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 42 42 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 43 43 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 46 46 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8850 0.2511 8 6 5.5892 2.8868 0.3775 9 6 6.0890 4.3275 0.5023 10 6 7.5907 4.3293 0.6273 11 8 8.2012 3.2814 0.6171 12 7 8.2555 5.4953 0.7495 13 6 9.6772 5.8657 0.8885 14 6 9.2734 7.2253 0.2896 15 8 9.3779 7.2804 -1.1344 16 6 9.9176 8.4043 0.9722 17 1 10.5927 8.2463 1.8003 18 6 9.6461 9.6847 0.5388 19 7 10.2087 10.7137 1.1341 20 14 8.4791 9.9579 -0.8940 21 1 9.2470 9.9571 -2.1651 22 1 7.4697 8.8692 -0.9249 23 1 7.7928 11.2647 -0.7312 24 6 7.8539 6.9147 0.7969 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0698 1.5875 -2.1491 31 1 0.5488 2.1253 -1.3968 32 1 1.9989 3.1542 -1.3075 33 1 4.0029 0.9836 -0.7597 34 1 3.8570 0.8800 1.0113 35 1 3.6263 3.3458 1.1365 36 1 3.7722 3.4494 -0.6344 37 1 6.0277 2.4259 -0.5076 38 1 5.8811 2.3226 1.2632 39 1 5.6504 4.7888 1.3872 40 1 5.7971 4.8913 -0.3838 41 1 10.3463 5.2867 0.2522 42 1 10.0186 5.9249 1.9221 43 1 9.0973 8.1230 -1.5170 44 1 10.0179 11.6144 0.8289 45 1 7.6571 7.2821 1.8041 46 1 7.0677 7.1728 0.0874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344393909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:38 Heat of formation + Delta-G solvation = -77.726867 kcal Electronic energy + Delta-G solvation = -22309.316647 eV Core-core repulsion = 19006.393380 eV Total energy + Delta-G solvation = -3302.923267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.78389 -38.08179 -37.51982 -34.57933 -34.37974 -32.56603 -31.18848 -29.30996 -28.14297 -26.21079 -25.45730 -25.04856 -22.94699 -20.98842 -20.25410 -19.96232 -18.48776 -17.44793 -16.47887 -16.37835 -16.03346 -15.42695 -15.16828 -15.03257 -14.52153 -13.88593 -13.79695 -13.68078 -13.39701 -13.07328 -12.74562 -12.67256 -12.50747 -12.23009 -12.21364 -12.09268 -11.83377 -11.79600 -11.28098 -11.21096 -11.18331 -10.96933 -10.78488 -10.72239 -10.61904 -10.52034 -10.40264 -10.15455 -9.70616 -9.29943 -9.00976 -8.69613 -8.01800 -6.44239 -4.50159 2.97068 2.98333 3.11491 3.12438 3.42084 4.00519 4.40124 4.59749 4.62253 4.65595 4.85560 4.93343 4.99939 5.09261 5.11338 5.22315 5.25661 5.35888 5.40960 5.52141 5.55142 5.60281 5.68002 5.71063 5.72169 5.75861 5.80285 5.86952 5.93478 5.98769 6.04249 6.06102 6.13391 6.18881 6.25966 6.31807 6.34921 6.39235 6.49167 6.59749 7.18554 8.00405 8.31936 8.48865 8.59727 8.65707 9.13310 10.67999 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027980 B = 0.002857 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.468863 B = 9797.683066 C =10410.212170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.068 0.932 5 C -0.151 4.151 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.102 4.102 9 C -0.135 4.135 10 C 0.528 3.472 11 O -0.562 6.562 12 N -0.636 5.636 13 C 0.125 3.875 14 C 0.194 3.806 15 O -0.553 6.553 16 C -0.536 4.536 17 H 0.091 0.909 18 C 0.079 3.921 19 N -0.876 5.876 20 Si 0.860 3.140 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.284 1.284 24 C 0.064 3.936 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.351 0.649 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -13.352 -2.238 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.087 0.913 5 C -0.208 4.208 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.140 4.140 9 C -0.174 4.174 10 C 0.318 3.682 11 O -0.442 6.442 12 N -0.370 5.370 13 C 0.003 3.997 14 C 0.153 3.847 15 O -0.364 6.364 16 C -0.574 4.574 17 H 0.109 0.891 18 C -0.126 4.126 19 N -0.512 5.512 20 Si 0.689 3.311 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.210 1.210 24 C -0.060 4.060 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.203 0.797 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.910 -14.467 -2.166 22.359 hybrid contribution -0.849 1.040 -0.757 1.541 sum -17.759 -13.427 -2.923 22.455 Atomic orbital electron populations 1.21829 0.96089 1.01368 1.01852 1.21587 0.95724 0.96594 1.01928 1.21190 0.95685 0.95896 0.98407 0.91316 1.21940 1.00972 1.00755 0.97135 1.21641 0.94528 0.96999 1.02072 1.21672 0.95352 0.96837 1.01970 1.21328 0.94429 0.94940 1.03268 1.21603 0.92472 0.99493 1.03879 1.20298 0.89587 0.82105 0.76216 1.90636 1.70124 1.30820 1.52617 1.50153 1.10350 1.05834 1.70669 1.23272 0.82552 0.93218 1.00613 1.20561 0.90548 0.94422 0.79126 1.86481 1.89220 1.39047 1.21659 1.21238 1.29248 0.88577 1.18302 0.89071 1.25019 0.95208 0.96088 0.96305 1.69859 1.41906 0.99004 1.40383 0.87318 0.81962 0.78479 0.83364 1.19299 1.18267 1.21014 1.24589 1.01707 0.77810 1.01861 0.92532 0.93027 0.92857 0.92089 0.92098 0.92802 0.92784 0.92369 0.91933 0.91972 0.92072 0.91765 0.91382 0.91408 0.89404 0.89445 0.90715 0.88861 0.79696 0.91888 0.88750 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.02 16 3 C -0.09 -0.73 2.39 -90.62 -0.22 -0.95 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 5 C -0.15 -1.15 8.70 37.16 0.32 -0.83 16 6 C -0.11 -1.03 4.68 -26.73 -0.13 -1.15 16 7 C -0.12 -1.19 4.97 -26.73 -0.13 -1.32 16 8 C -0.10 -1.29 4.50 -26.73 -0.12 -1.41 16 9 C -0.13 -1.92 5.45 -27.89 -0.15 -2.07 16 10 C 0.53 10.11 8.06 -10.99 -0.09 10.02 16 11 O -0.56 -12.41 16.71 5.56 0.09 -12.31 16 12 N -0.64 -12.74 3.61 -178.33 -0.64 -13.38 16 13 C 0.13 2.64 8.23 -2.97 -0.02 2.61 16 14 C 0.19 4.40 1.06 -90.86 -0.10 4.31 16 15 O -0.55 -13.00 13.32 -35.23 -0.47 -13.47 16 16 C -0.54 -13.72 9.20 -34.44 -0.32 -14.04 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.88 -24.31 13.96 55.43 0.77 -23.53 16 20 Si 0.86 18.65 24.34 -169.99 -4.14 14.51 16 21 H -0.27 -5.68 7.06 56.52 0.40 -5.28 16 22 H -0.26 -5.17 5.28 56.52 0.30 -4.87 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.06 1.25 7.20 -2.99 -0.02 1.23 16 25 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 6.56 -51.93 -0.34 0.03 16 32 H 0.06 0.46 6.56 -51.92 -0.34 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 37 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.09 1.83 8.09 -51.92 -0.42 1.41 16 43 H 0.35 7.81 3.31 45.56 0.15 7.96 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 46 H 0.07 1.26 6.98 -51.93 -0.36 0.90 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -29.36 359.37 -7.81 -37.18 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.99 Total: 8.90 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.85 Total: -3.30 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.13 Total: -36.92 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.38 Total: -25.78 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.14 Total: 14.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.36 -7.81 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344393909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.550 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds