Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47169 * 2 1 4 4 C 1.53002 * 109.47169 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47650 * 300.00227 * 3 2 1 6 6 O 1.20820 * 119.99759 * 259.16956 * 5 3 2 7 7 O 1.34224 * 119.99610 * 79.16309 * 5 3 2 8 8 N 1.46904 * 109.46921 * 60.00546 * 3 2 1 9 9 C 1.46893 * 110.99949 * 52.28772 * 8 3 2 10 10 C 1.53006 * 109.46815 * 190.00082 * 9 8 3 11 11 C 1.53005 * 109.46966 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47191 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99693 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00347 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99398 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00385 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47228 * 59.99942 * 16 14 12 18 18 H 1.48506 * 109.47475 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47225 * 300.00321 * 16 14 12 20 20 C 1.46903 * 110.99808 * 176.24662 * 8 3 2 21 21 C 1.52997 * 109.47515 * 78.17617 * 20 8 3 22 22 C 1.52999 * 117.49589 * 245.04312 * 21 20 8 23 23 C 1.52997 * 117.50060 * 176.41951 * 21 20 8 24 24 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47192 * 299.99588 * 1 2 3 26 26 H 1.09003 * 109.47180 * 59.99397 * 1 2 3 27 27 H 1.09004 * 109.46457 * 240.00444 * 2 1 3 28 28 H 1.08994 * 109.46967 * 120.00484 * 2 1 3 29 29 H 1.09003 * 109.47263 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.46826 * 60.00811 * 4 3 2 31 31 H 1.08994 * 109.46967 * 300.00484 * 4 3 2 32 32 H 0.96704 * 117.00173 * 180.02562 * 7 5 3 33 33 H 1.08998 * 109.47721 * 309.99926 * 9 8 3 34 34 H 1.09001 * 109.47093 * 70.00742 * 9 8 3 35 35 H 1.08997 * 109.47326 * 299.99775 * 10 9 8 36 36 H 1.08998 * 109.47424 * 60.00160 * 10 9 8 37 37 H 1.09007 * 109.46545 * 299.99673 * 11 10 9 38 38 H 1.08998 * 109.47235 * 59.99657 * 11 10 9 39 39 H 0.97002 * 119.99780 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46659 * 198.17449 * 20 8 3 41 41 H 1.09004 * 109.46949 * 318.17310 * 20 8 3 42 42 H 1.09003 * 115.55025 * 30.74729 * 21 20 8 43 43 H 1.08999 * 117.50105 * 359.97438 * 22 21 20 44 44 H 1.09003 * 117.49910 * 145.02483 * 22 21 20 45 45 H 1.09000 * 117.49848 * 214.97888 * 23 21 20 46 46 H 1.09008 * 117.49738 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 1.5377 2.1530 -1.2304 6 8 2.2681 2.3050 -2.1808 7 8 0.2788 2.6169 -1.2705 8 7 1.5504 2.1349 1.1996 9 6 1.8654 1.3707 2.4139 10 6 1.1321 1.9855 3.6078 11 6 1.4607 1.1899 4.8728 12 6 0.7390 1.7958 6.0489 13 1 0.1093 2.6619 5.9082 14 6 0.8825 1.2444 7.3044 15 7 1.6498 0.1901 7.4757 16 14 -0.0126 1.9949 8.7620 17 1 -1.4768 1.9547 8.5179 18 1 0.3064 1.2229 9.9899 19 1 0.4214 3.4043 8.9373 20 6 2.0934 3.4975 1.2792 21 6 1.3226 4.4105 0.3236 22 6 2.0916 5.0089 -0.8560 23 6 1.6839 5.8971 0.3212 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9334 2.4701 -0.0011 30 1 3.9329 0.9288 -0.8910 31 1 3.9337 0.9284 0.8890 32 1 0.0018 3.0654 -2.0812 33 1 1.5468 0.3363 2.2852 34 1 2.9402 1.4003 2.5932 35 1 1.4508 3.0198 3.7366 36 1 0.0574 1.9560 3.4286 37 1 1.1423 0.1554 4.7442 38 1 2.5355 1.2198 5.0519 39 1 1.7505 -0.1981 8.3589 40 1 1.9918 3.8700 2.2986 41 1 3.1470 3.4857 0.9999 42 1 0.2775 4.1463 0.1614 43 1 3.1468 4.7526 -0.9509 44 1 1.5526 5.1385 -1.7945 45 1 0.8768 6.6110 0.1572 46 1 2.4706 6.2249 1.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594787653.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -67.481357 kcal Electronic energy + Delta-G solvation = -24214.253563 eV Core-core repulsion = 20911.774575 eV Total energy + Delta-G solvation = -3302.478988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03633 -38.42892 -36.95378 -35.99952 -34.24813 -32.79109 -31.36306 -29.48758 -27.33429 -25.89569 -24.67577 -23.10910 -22.36862 -22.12556 -20.63135 -20.09192 -19.03664 -17.93038 -16.88156 -16.41349 -16.04342 -15.52082 -14.98688 -14.63207 -14.39136 -14.31181 -13.90160 -13.75546 -13.36150 -12.99788 -12.64921 -12.35666 -12.23287 -12.03101 -11.81179 -11.71555 -11.57142 -11.46433 -11.26109 -11.09706 -10.91352 -10.86334 -10.68719 -10.61261 -10.48684 -10.29701 -10.09781 -9.91211 -9.49027 -9.31838 -9.06666 -8.32943 -8.15044 -5.98784 -4.00638 2.26447 3.09036 3.34472 3.38780 3.41455 3.73153 3.91878 4.47607 4.57792 4.72930 4.82656 4.92504 5.02149 5.21622 5.29649 5.37198 5.37801 5.42218 5.50894 5.58725 5.61428 5.65238 5.74611 5.80233 5.82273 5.89655 5.97301 6.04518 6.07427 6.10677 6.15858 6.31963 6.41876 6.53682 6.54469 6.70809 6.75540 7.07563 7.23349 7.29652 7.69023 7.83450 8.01524 8.01801 8.44827 9.06311 9.63391 11.12589 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.004293 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.054510 B = 6520.183840 C = 7188.686012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.120 3.880 4 C -0.175 4.175 5 C 0.511 3.489 6 O -0.525 6.525 7 O -0.492 6.492 8 N -0.509 5.509 9 C 0.048 3.952 10 C -0.103 4.103 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.063 3.937 21 C -0.144 4.144 22 C -0.189 4.189 23 C -0.179 4.179 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.394 0.606 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 4.396 -18.288 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.029 3.971 4 C -0.234 4.234 5 C 0.353 3.647 6 O -0.413 6.413 7 O -0.301 6.301 8 N -0.234 5.234 9 C -0.079 4.079 10 C -0.141 4.141 11 C -0.015 4.015 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.064 4.064 21 C -0.163 4.163 22 C -0.226 4.226 23 C -0.217 4.217 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.251 0.749 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.147 0.853 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.091 4.133 -18.082 18.549 hybrid contribution 0.364 0.681 0.352 0.849 sum 0.455 4.814 -17.730 18.377 Atomic orbital electron populations 1.21788 0.93851 1.01185 1.03863 1.21729 0.98180 0.92285 1.03231 1.20939 0.93520 0.94624 0.88065 1.22374 0.94161 1.03322 1.03541 1.23017 0.79133 0.74215 0.88331 1.90673 1.57374 1.55185 1.38107 1.84768 1.31403 1.69093 1.44825 1.62269 1.58180 1.01731 1.01185 1.22504 0.98480 0.98202 0.88665 1.21678 0.99547 0.99206 0.93668 1.19064 0.96688 0.95232 0.90497 1.21203 1.28202 1.13510 0.92729 0.92744 1.25010 0.95432 0.95028 0.98940 1.69955 1.38613 1.22120 1.22927 0.86677 0.80261 0.79220 0.81951 1.20224 1.21348 1.20304 1.22020 0.95667 0.88148 1.00573 1.22655 1.01501 0.93569 0.98531 1.23069 1.00667 1.05703 0.93180 1.22941 1.03520 0.93716 1.01499 0.93151 0.90324 0.92518 0.91517 0.89452 0.91508 0.91004 0.90650 0.74876 0.90072 0.94886 0.93386 0.92375 0.96587 0.96889 0.93013 0.88790 0.93826 0.85347 0.89420 0.89498 0.88925 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.18 37.16 0.34 -1.42 16 2 C -0.12 -1.37 4.43 -26.73 -0.12 -1.49 16 3 C 0.12 1.50 0.36 -132.75 -0.05 1.45 16 4 C -0.18 -2.13 7.29 37.16 0.27 -1.85 16 5 C 0.51 6.31 3.72 36.01 0.13 6.44 16 6 O -0.53 -7.51 16.30 -18.75 -0.31 -7.82 16 7 O -0.49 -5.08 8.47 -39.24 -0.33 -5.42 16 8 N -0.51 -6.99 3.44 -220.31 -0.76 -7.75 16 9 C 0.05 0.76 3.91 -3.83 -0.01 0.75 16 10 C -0.10 -2.03 5.13 -26.73 -0.14 -2.17 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.06 0.85 4.91 -3.82 -0.02 0.83 16 21 C -0.14 -1.72 3.72 -90.62 -0.34 -2.05 16 22 C -0.19 -2.08 8.15 -26.73 -0.22 -2.30 16 23 C -0.18 -1.92 10.25 -26.73 -0.27 -2.20 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.07 7.31 -51.93 -0.38 0.69 16 26 H 0.06 0.64 6.15 -51.93 -0.32 0.32 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.04 6.10 -51.93 -0.32 0.72 16 29 H 0.07 0.83 5.99 -51.93 -0.31 0.52 16 30 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 31 H 0.07 0.89 6.84 -51.93 -0.35 0.54 16 32 H 0.39 2.57 9.10 45.56 0.41 2.99 16 33 H 0.08 1.27 5.46 -51.93 -0.28 0.99 16 34 H 0.03 0.53 7.00 -51.93 -0.36 0.17 16 35 H 0.05 0.94 6.24 -51.93 -0.32 0.62 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 40 H 0.09 1.38 5.85 -51.93 -0.30 1.08 16 41 H 0.04 0.58 5.14 -51.93 -0.27 0.31 16 42 H 0.13 1.60 6.44 -51.93 -0.33 1.26 16 43 H 0.09 1.05 8.04 -51.93 -0.42 0.64 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -30.65 347.70 -8.30 -38.96 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.89 Total: 3.04 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.97 Total: -16.84 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.02 Total: -33.70 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.64 Total: -13.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.65 -8.30 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594787653.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.524 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds