Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47301 * 2 1 4 4 H 1.08998 * 109.47063 * 183.09664 * 3 2 1 5 5 N 1.46891 * 109.47243 * 303.09889 * 3 2 1 6 6 C 1.46895 * 111.00214 * 278.28141 * 5 3 2 7 7 C 1.53004 * 109.47313 * 183.28575 * 6 5 3 8 8 C 1.53002 * 109.46871 * 299.99819 * 7 6 5 9 9 C 1.53001 * 109.47113 * 59.99904 * 7 6 5 10 10 C 1.50702 * 109.47169 * 180.02562 * 7 6 5 11 11 H 1.07998 * 120.00005 * 359.08034 * 10 7 6 12 12 C 1.37879 * 120.00253 * 179.08701 * 10 7 6 13 13 N 1.31514 * 119.99591 * 2.90744 * 12 10 7 14 14 Si 1.86796 * 120.00456 * 182.91512 * 12 10 7 15 15 H 1.48498 * 109.47160 * 94.98549 * 14 12 10 16 16 H 1.48498 * 109.47192 * 214.99352 * 14 12 10 17 17 H 1.48502 * 109.46864 * 334.98900 * 14 12 10 18 18 C 1.53005 * 109.46759 * 63.10026 * 3 2 1 19 19 C 1.50702 * 112.85147 * 54.13257 * 18 3 2 20 20 O 1.20828 * 119.99604 * 7.79986 * 19 18 3 21 21 O 1.34226 * 120.00027 * 187.80139 * 19 18 3 22 22 C 1.53778 * 113.61382 * 282.82646 * 18 3 2 23 23 C 1.53779 * 87.08240 * 220.02240 * 22 18 3 24 24 C 1.53778 * 113.61327 * 185.32824 * 18 3 2 25 25 H 1.09000 * 109.46990 * 171.78648 * 1 2 3 26 26 H 1.09003 * 109.46809 * 51.78712 * 1 2 3 27 27 H 1.08999 * 109.47131 * 291.78855 * 1 2 3 28 28 H 1.09000 * 109.46953 * 120.00433 * 2 1 3 29 29 H 1.09006 * 109.47062 * 240.00046 * 2 1 3 30 30 H 1.00898 * 110.99998 * 154.32398 * 5 3 2 31 31 H 1.09000 * 109.47036 * 303.28277 * 6 5 3 32 32 H 1.09001 * 109.47616 * 63.28445 * 6 5 3 33 33 H 1.08997 * 109.47100 * 64.62065 * 8 7 6 34 34 H 1.09004 * 109.46981 * 184.62258 * 8 7 6 35 35 H 1.09002 * 109.46745 * 304.61464 * 8 7 6 36 36 H 1.09000 * 109.47335 * 60.00237 * 9 7 6 37 37 H 1.09001 * 109.46803 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.46975 * 299.99775 * 9 7 6 39 39 H 0.97003 * 119.99713 * 180.02562 * 13 12 10 40 40 H 0.96698 * 116.99991 * 180.02562 * 21 19 18 41 41 H 1.09006 * 113.61719 * 334.56830 * 22 18 3 42 42 H 1.08997 * 113.61768 * 105.46785 * 22 18 3 43 43 H 1.08997 * 113.61233 * 270.88540 * 23 22 18 44 44 H 1.08999 * 113.69205 * 139.99123 * 23 22 18 45 45 H 1.08992 * 113.62075 * 254.52831 * 24 18 3 46 46 H 1.09000 * 113.61197 * 25.43703 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1286 1.4429 -0.0555 5 7 1.4903 2.1562 -1.1602 6 6 2.2691 1.8695 -2.3722 7 6 1.7182 2.6919 -3.5389 8 6 0.2523 2.3230 -3.7755 9 6 1.8220 4.1817 -3.2066 10 6 2.5168 2.3972 -4.7825 11 1 3.3447 1.7050 -4.7412 12 6 2.1905 3.0114 -5.9730 13 7 1.2193 3.8973 -6.0113 14 14 3.1278 2.5852 -7.5316 15 1 2.3918 1.5351 -8.2804 16 1 3.2578 3.7981 -8.3784 17 1 4.4793 2.0835 -7.1749 18 6 1.5947 2.1408 1.2865 19 6 1.9992 1.3910 2.5296 20 8 2.7285 0.4313 2.4457 21 8 1.5492 1.7892 3.7298 22 6 0.1175 2.5681 1.2758 23 6 0.5682 3.8621 1.9738 24 6 1.9458 3.6374 1.3282 25 1 -0.3633 -1.0171 -0.1468 26 1 -0.3633 0.6357 -0.8075 27 1 -0.3633 0.3814 0.9542 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.4451 3.1490 -0.9858 31 1 3.3134 2.1323 -2.2037 32 1 2.1952 0.8081 -2.6090 33 1 -0.3397 2.6114 -2.9069 34 1 -0.1167 2.8474 -4.6570 35 1 0.1689 1.2474 -3.9313 36 1 2.8663 4.4445 -3.0381 37 1 1.4291 4.7676 -4.0376 38 1 1.2440 4.3945 -2.3072 39 1 0.9895 4.3291 -6.8490 40 1 1.8361 1.2770 4.4982 41 1 -0.2834 2.7287 0.2750 42 1 -0.5234 1.9391 1.8936 43 1 0.5789 3.7906 3.0613 44 1 0.0575 4.7549 1.6132 45 1 2.7808 3.8718 1.9884 46 1 2.0447 4.0903 0.3417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595286514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = -72.536707 kcal Electronic energy + Delta-G solvation = -24491.620238 eV Core-core repulsion = 21188.922033 eV Total energy + Delta-G solvation = -3302.698205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31565 -38.74447 -36.71515 -36.24656 -34.36763 -32.02619 -30.21605 -27.77304 -25.77975 -25.58946 -25.24694 -24.74492 -23.81911 -22.41979 -20.05066 -19.02448 -18.38581 -18.02108 -16.39350 -16.28534 -15.78616 -15.60232 -14.87138 -14.65904 -14.32366 -13.72612 -13.38434 -13.31191 -12.94758 -12.57105 -12.44627 -12.33550 -12.04271 -11.89085 -11.65687 -11.47626 -11.28565 -11.12440 -10.96217 -10.90746 -10.63518 -10.59400 -10.49086 -10.29551 -10.13565 -10.04985 -10.00502 -9.77178 -9.38099 -9.04300 -8.62853 -8.27687 -7.71042 -5.91344 -4.01229 2.08062 2.88052 3.31782 3.39168 3.42400 4.36350 4.42162 4.45962 4.65605 4.80640 4.89826 5.22333 5.34405 5.39197 5.49255 5.62106 5.69069 5.72823 5.82912 5.87940 5.95135 6.02876 6.15760 6.25590 6.34167 6.36186 6.43107 6.47286 6.53051 6.57789 6.71670 6.85211 6.92028 7.05479 7.16662 7.36042 7.46554 7.71162 7.74976 7.81792 7.85293 7.97347 8.21650 8.34247 8.56601 9.00113 9.63840 11.09004 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.004391 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.801356 B = 6374.442298 C = 6638.532891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.114 3.886 4 H 0.043 0.957 5 N -0.675 5.675 6 C 0.076 3.924 7 C 0.069 3.931 8 C -0.117 4.117 9 C -0.133 4.133 10 C -0.505 4.505 11 H 0.052 0.948 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.887 3.113 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.086 4.086 19 C 0.506 3.494 20 O -0.506 6.506 21 O -0.512 6.512 22 C -0.109 4.109 23 C -0.144 4.144 24 C -0.125 4.125 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.337 0.663 31 H 0.013 0.987 32 H 0.058 0.942 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.008 0.992 39 H 0.257 0.743 40 H 0.405 0.595 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -1.158 17.283 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.004 3.996 4 H 0.061 0.939 5 N -0.310 5.310 6 C -0.052 4.052 7 C 0.068 3.932 8 C -0.175 4.175 9 C -0.190 4.190 10 C -0.544 4.544 11 H 0.070 0.930 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.716 3.284 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.087 4.087 19 C 0.348 3.652 20 O -0.394 6.394 21 O -0.324 6.324 22 C -0.146 4.146 23 C -0.182 4.182 24 C -0.162 4.162 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.647 -1.544 16.639 16.918 hybrid contribution 1.738 -0.194 -0.216 1.762 sum -0.909 -1.737 16.422 16.539 Atomic orbital electron populations 1.21852 0.95668 1.00791 1.02207 1.21657 0.96736 0.95166 1.02224 1.21088 0.96609 0.94406 0.87517 0.93915 1.60787 1.54564 1.13623 1.02025 1.22206 0.93107 1.00489 0.89391 1.18101 0.93609 0.90853 0.90618 1.21619 0.97225 0.98383 1.00294 1.21865 0.97512 1.00393 0.99279 1.21115 1.14645 1.25291 0.93299 0.93020 1.24869 0.95167 0.94914 0.98581 1.69829 1.29634 1.26976 1.25899 0.86656 0.80278 0.77819 0.83658 1.20852 1.21375 1.20099 1.21786 1.01013 0.95628 0.90295 1.22760 0.76389 0.81873 0.84159 1.90671 1.34659 1.27230 1.86831 1.84559 1.70748 1.59674 1.17391 1.23063 0.92426 0.96085 1.03059 1.22991 0.95848 0.98633 1.00702 1.22986 0.98605 0.92140 1.02492 0.94367 0.90204 0.93711 0.91067 0.92042 0.84096 0.96873 0.92325 0.96237 0.90820 0.96303 0.96235 0.89624 0.97290 0.93235 0.73654 0.86725 0.91069 0.89275 0.90852 0.91227 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.64 37.16 0.32 -1.77 16 2 C -0.12 -1.84 5.43 -26.73 -0.15 -1.98 16 3 C 0.11 1.73 1.89 -67.72 -0.13 1.61 16 4 H 0.04 0.72 7.80 -51.93 -0.41 0.32 16 5 N -0.68 -11.23 3.50 -106.73 -0.37 -11.61 16 6 C 0.08 1.55 4.41 -3.82 -0.02 1.54 16 7 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 8 C -0.12 -2.76 8.07 37.16 0.30 -2.46 16 9 C -0.13 -3.02 7.94 37.16 0.29 -2.72 16 10 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 11 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 12 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 13 N -0.88 -24.10 9.34 55.43 0.52 -23.58 16 14 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -1.08 0.75 -154.85 -0.12 -1.19 16 19 C 0.51 6.29 7.08 36.01 0.25 6.55 16 20 O -0.51 -7.67 14.82 -18.75 -0.28 -7.95 16 21 O -0.51 -4.62 11.53 -39.25 -0.45 -5.07 16 22 C -0.11 -1.24 4.64 -25.92 -0.12 -1.36 16 23 C -0.14 -1.45 7.64 -25.92 -0.20 -1.65 16 24 C -0.12 -1.42 6.96 -25.92 -0.18 -1.60 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.24 7.15 -51.93 -0.37 0.87 16 27 H 0.04 0.57 5.36 -51.93 -0.28 0.29 16 28 H 0.07 1.11 5.54 -51.93 -0.29 0.83 16 29 H 0.06 1.01 7.41 -51.93 -0.38 0.63 16 30 H 0.34 5.45 3.69 -39.29 -0.14 5.31 16 31 H 0.01 0.28 7.99 -51.93 -0.41 -0.14 16 32 H 0.06 1.25 7.38 -51.93 -0.38 0.86 16 33 H 0.02 0.41 7.75 -51.93 -0.40 0.00 16 34 H 0.07 1.92 6.00 -51.93 -0.31 1.61 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 2.19 6.03 -51.93 -0.31 1.87 16 38 H 0.01 0.17 6.50 -51.93 -0.34 -0.17 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.41 1.94 9.10 45.56 0.41 2.36 16 41 H 0.11 1.45 6.64 -51.93 -0.34 1.11 16 42 H 0.07 0.77 6.94 -51.93 -0.36 0.41 16 43 H 0.09 0.84 6.88 -51.93 -0.36 0.48 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 46 H 0.10 1.20 6.22 -51.93 -0.32 0.88 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -28.48 338.28 -7.36 -35.83 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.66 Total: 6.80 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.19 Total: -15.54 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.14 Total: -35.19 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.73 Total: -13.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.48 -7.36 -35.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595286514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.705 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds