Wall clock time and date at job start Tue Mar 31 2020 07:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.09001 * 109.46798 * 54.87581 * 3 2 1 5 5 N 1.46905 * 109.47338 * 294.87838 * 3 2 1 6 6 C 1.46889 * 111.00201 * 129.29566 * 5 3 2 7 7 C 1.52995 * 109.47303 * 185.27204 * 6 5 3 8 8 C 1.52997 * 109.47493 * 300.00587 * 7 6 5 9 9 C 1.53002 * 109.46889 * 60.00239 * 7 6 5 10 10 C 1.50701 * 109.47558 * 179.97438 * 7 6 5 11 11 H 1.08006 * 119.99742 * 0.02562 * 10 7 6 12 12 C 1.37874 * 120.00428 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99767 * 0.02562 * 12 10 7 14 14 Si 1.86796 * 120.00179 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47344 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47612 * 119.99783 * 14 12 10 17 17 H 1.48508 * 109.47249 * 239.99857 * 14 12 10 18 18 C 1.53003 * 109.47119 * 174.87567 * 3 2 1 19 19 C 1.50693 * 112.84778 * 62.49099 * 18 3 2 20 20 O 1.20824 * 120.00560 * 354.84349 * 19 18 3 21 21 O 1.34228 * 119.99932 * 174.84078 * 19 18 3 22 22 C 1.53782 * 113.68607 * 193.75899 * 18 3 2 23 23 C 1.53781 * 87.07928 * 89.12898 * 22 18 3 24 24 C 1.53780 * 113.61241 * 291.29584 * 18 3 2 25 25 H 1.09006 * 109.47056 * 65.31684 * 1 2 3 26 26 H 1.09000 * 109.47379 * 185.31934 * 1 2 3 27 27 H 1.08998 * 109.47130 * 305.32297 * 1 2 3 28 28 H 1.09002 * 109.46938 * 240.00313 * 2 1 3 29 29 H 1.08996 * 109.47345 * 120.00560 * 2 1 3 30 30 H 1.00901 * 110.99714 * 253.25693 * 5 3 2 31 31 H 1.09002 * 109.47499 * 305.27796 * 6 5 3 32 32 H 1.09008 * 109.47260 * 65.27645 * 6 5 3 33 33 H 1.08999 * 109.47453 * 59.99539 * 8 7 6 34 34 H 1.09000 * 109.47366 * 179.97438 * 8 7 6 35 35 H 1.09008 * 109.46748 * 299.99361 * 8 7 6 36 36 H 1.09008 * 109.47152 * 59.99936 * 9 7 6 37 37 H 1.08999 * 109.47524 * 179.97438 * 9 7 6 38 38 H 1.09003 * 109.47405 * 300.00038 * 9 7 6 39 39 H 0.97003 * 120.00081 * 180.02562 * 13 12 10 40 40 H 0.96704 * 117.00516 * 180.02562 * 21 19 18 41 41 H 1.09003 * 113.60673 * 203.67455 * 22 18 3 42 42 H 1.09001 * 113.61908 * 334.57564 * 22 18 3 43 43 H 1.09001 * 113.60998 * 270.87493 * 23 22 18 44 44 H 1.09004 * 113.61581 * 139.98162 * 23 22 18 45 45 H 1.08995 * 113.61721 * 25.34278 * 24 18 3 46 46 H 1.08993 * 113.61428 * 156.25368 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6037 1.9821 0.8406 5 7 1.6540 2.0985 -1.2565 6 6 0.9957 3.3858 -0.9977 7 6 0.4923 3.9756 -2.3166 8 6 1.6745 4.1886 -3.2642 9 6 -0.5077 3.0112 -2.9576 10 6 -0.1835 5.2961 -2.0510 11 1 -0.2473 5.6768 -1.0423 12 6 -0.7205 6.0181 -3.0956 13 7 -0.6434 5.5542 -4.3238 14 14 -1.5577 7.6552 -2.7665 15 1 -1.5127 7.9506 -1.3118 16 1 -0.8544 8.7297 -3.5121 17 1 -2.9722 7.5867 -3.2136 18 6 3.5646 1.4444 0.1288 19 6 4.2506 0.7672 -1.0296 20 8 3.5949 0.2150 -1.8810 21 8 5.5901 0.7776 -1.1155 22 6 4.1538 2.8223 0.4737 23 6 3.9762 2.4406 1.9528 24 6 4.0672 0.9727 1.5035 25 1 -0.3633 0.4292 -0.9338 26 1 -0.3634 -1.0232 0.0953 27 1 -0.3633 0.5942 0.8385 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.4517 2.2156 -1.8632 31 1 0.1535 3.2341 -0.3225 32 1 1.7082 4.0729 -0.5410 33 1 2.1629 3.2333 -3.4563 34 1 1.3158 4.6083 -4.2040 35 1 2.3870 4.8757 -2.8075 36 1 -1.3500 2.8594 -2.2825 37 1 -0.8668 3.4315 -3.8971 38 1 -0.0193 2.0559 -3.1497 39 1 -1.0208 6.0624 -5.0589 40 1 5.9847 0.3305 -1.8768 41 1 5.1956 2.9389 0.1749 42 1 3.5264 3.6565 0.1597 43 1 3.0026 2.7131 2.3601 44 1 4.8047 2.7552 2.5875 45 1 3.3699 0.3138 2.0209 46 1 5.0852 0.5837 1.4863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595286516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:29 Heat of formation + Delta-G solvation = -81.776097 kcal Electronic energy + Delta-G solvation = -24575.296400 eV Core-core repulsion = 21272.197545 eV Total energy + Delta-G solvation = -3303.098855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.15069 -38.62285 -36.72742 -36.02301 -34.31536 -32.03796 -30.24368 -27.78162 -25.90792 -25.48587 -25.16310 -24.97996 -23.21213 -21.85654 -20.80654 -19.31179 -18.29478 -17.64984 -16.84215 -15.84506 -15.75407 -15.46899 -14.77673 -14.48813 -14.16002 -13.69589 -13.60862 -13.12724 -12.91579 -12.64630 -12.40634 -12.09971 -12.06025 -11.83522 -11.70141 -11.45840 -11.27937 -11.09779 -11.01626 -10.89665 -10.65687 -10.57066 -10.50126 -10.40011 -10.24552 -10.09352 -10.00170 -9.74097 -9.31833 -8.96910 -8.55679 -8.24717 -7.55104 -5.86831 -3.97363 2.24195 3.02718 3.32120 3.40547 3.43571 4.32060 4.38898 4.45981 4.49194 4.64277 4.98016 5.22689 5.32130 5.38377 5.51308 5.53585 5.58808 5.62605 5.76623 5.84095 5.87005 5.94359 6.05004 6.23142 6.26770 6.32517 6.37046 6.46120 6.51214 6.78021 6.80204 6.85613 6.95907 7.16765 7.23421 7.49526 7.56414 7.81180 7.82897 7.90911 7.97736 8.06965 8.27585 8.41958 8.61216 9.04777 9.67499 11.13470 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020894 B = 0.004941 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.771082 B = 5665.700496 C = 5783.068015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.122 3.878 4 H 0.077 0.923 5 N -0.667 5.667 6 C 0.074 3.926 7 C 0.071 3.929 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.505 4.505 11 H 0.051 0.949 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.886 3.114 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.102 4.102 19 C 0.485 3.515 20 O -0.489 6.489 21 O -0.521 6.521 22 C -0.128 4.128 23 C -0.136 4.136 24 C -0.118 4.118 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.338 0.662 31 H 0.056 0.944 32 H 0.011 0.989 33 H 0.010 0.990 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.257 0.743 40 H 0.406 0.594 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -9.525 10.408 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.095 0.905 5 N -0.299 5.299 6 C -0.055 4.055 7 C 0.070 3.930 8 C -0.188 4.188 9 C -0.176 4.176 10 C -0.544 4.544 11 H 0.069 0.931 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.715 3.285 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.104 4.104 19 C 0.326 3.674 20 O -0.374 6.374 21 O -0.333 6.333 22 C -0.166 4.166 23 C -0.173 4.173 24 C -0.156 4.156 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.159 0.841 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.265 0.735 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.831 -9.763 10.248 17.233 hybrid contribution 0.613 1.226 -0.147 1.378 sum 10.444 -8.537 10.101 16.852 Atomic orbital electron populations 1.21613 0.95399 0.99947 1.02788 1.21667 0.96640 0.95510 1.01606 1.21380 0.86347 0.96883 0.94263 0.90528 1.60594 1.32265 1.25039 1.11970 1.22304 0.96051 0.86868 1.00245 1.18059 0.92464 0.93270 0.89183 1.21810 0.97201 0.96560 1.03263 1.21624 0.97695 0.96567 1.01692 1.21157 1.36007 1.03913 0.93282 0.93050 1.24885 0.96019 0.97487 0.95197 1.69859 1.45853 1.37805 0.98764 0.86633 0.79330 0.84370 0.78175 1.20000 1.21233 1.21150 1.22740 0.97837 0.98110 0.91720 1.23220 0.79999 0.77479 0.86655 1.90744 1.65394 1.41067 1.40234 1.84492 1.23467 1.73719 1.51619 1.23042 1.02001 0.94993 0.96547 1.22823 1.02663 0.95543 0.96290 1.22944 1.01919 0.97679 0.93100 0.90901 0.94084 0.93902 0.90018 0.93512 0.84106 0.92595 0.97077 0.97100 0.89956 0.96490 0.96439 0.90944 0.95856 0.93313 0.73515 0.88879 0.89917 0.89584 0.90823 0.90268 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.74 37.16 0.36 -1.70 16 2 C -0.12 -1.66 5.25 -26.73 -0.14 -1.80 16 3 C 0.12 1.80 1.44 -67.71 -0.10 1.70 16 4 H 0.08 1.11 6.67 -51.93 -0.35 0.77 16 5 N -0.67 -12.12 4.74 -106.73 -0.51 -12.63 16 6 C 0.07 1.52 4.28 -3.83 -0.02 1.50 16 7 C 0.07 1.73 0.57 -155.66 -0.09 1.64 16 8 C -0.13 -3.18 7.92 37.16 0.29 -2.88 16 9 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 10 C -0.50 -13.63 8.01 -34.44 -0.28 -13.90 16 11 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 12 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 13 N -0.88 -24.83 9.35 55.43 0.52 -24.31 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.10 -1.28 0.46 -154.85 -0.07 -1.35 16 19 C 0.49 6.56 6.65 36.00 0.24 6.80 16 20 O -0.49 -8.11 13.82 -18.75 -0.26 -8.37 16 21 O -0.52 -5.44 12.67 -39.25 -0.50 -5.94 16 22 C -0.13 -1.53 7.18 -25.92 -0.19 -1.71 16 23 C -0.14 -1.32 7.73 -25.92 -0.20 -1.52 16 24 C -0.12 -1.17 7.01 -25.92 -0.18 -1.35 16 25 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.34 5.99 -51.93 -0.31 1.03 16 29 H 0.05 0.57 6.82 -51.93 -0.35 0.22 16 30 H 0.34 6.49 4.89 -39.29 -0.19 6.30 16 31 H 0.06 1.17 8.03 -51.93 -0.42 0.76 16 32 H 0.01 0.23 6.62 -51.92 -0.34 -0.12 16 33 H 0.01 0.23 6.70 -51.93 -0.35 -0.11 16 34 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 35 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 38 H 0.02 0.55 7.60 -51.93 -0.39 0.15 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.41 2.65 9.10 45.56 0.41 3.07 16 41 H 0.09 1.04 7.67 -51.93 -0.40 0.65 16 42 H 0.08 1.15 6.55 -51.93 -0.34 0.81 16 43 H 0.09 0.85 7.60 -51.93 -0.39 0.45 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.73 6.91 -51.93 -0.36 0.37 16 46 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -29.61 346.82 -7.58 -37.20 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.89 Total: 8.15 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.15 Total: -15.55 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.01 Total: -36.94 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.76 Total: -14.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.61 -7.58 -37.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595286516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.580 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds