Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 H 1.08998 * 109.46947 * 305.00092 * 3 2 1 5 5 C 1.52996 * 109.47154 * 64.99989 * 3 2 1 6 6 C 1.53007 * 109.47115 * 60.00028 * 5 3 2 7 7 C 1.53003 * 109.47044 * 59.99623 * 6 5 3 8 8 C 1.52996 * 109.47472 * 300.00158 * 7 6 5 9 9 H 1.08996 * 109.47114 * 300.00489 * 8 7 6 10 10 C 1.52995 * 109.47273 * 179.97438 * 8 7 6 11 11 N 1.46502 * 109.47233 * 65.00012 * 10 8 7 12 12 C 1.36939 * 119.99859 * 88.90244 * 11 10 8 13 13 H 1.07997 * 119.99983 * 229.98815 * 12 11 10 14 14 C 1.38814 * 119.99668 * 49.98754 * 12 11 10 15 15 N 1.31624 * 119.99615 * 206.89879 * 14 12 11 16 16 Si 1.86793 * 120.00491 * 26.90094 * 14 12 11 17 17 H 1.48493 * 109.47372 * 174.58143 * 16 14 12 18 18 H 1.48507 * 109.47018 * 54.58009 * 16 14 12 19 19 H 1.48497 * 109.47037 * 294.58236 * 16 14 12 20 20 C 1.46492 * 120.00029 * 268.90633 * 11 10 8 21 21 C 1.53002 * 109.47169 * 264.47296 * 20 11 10 22 22 C 1.50700 * 109.47352 * 183.51646 * 21 20 11 23 23 O 1.20823 * 119.99818 * 0.02562 * 22 21 20 24 24 O 1.34235 * 119.99759 * 179.97438 * 22 21 20 25 25 C 1.53003 * 109.46860 * 185.00276 * 3 2 1 26 26 H 1.09001 * 109.47260 * 60.00030 * 1 2 3 27 27 H 1.09002 * 109.47391 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47259 * 299.99808 * 1 2 3 29 29 H 1.09008 * 109.46831 * 240.00024 * 2 1 3 30 30 H 1.08998 * 109.46981 * 120.00411 * 2 1 3 31 31 H 1.08996 * 109.47114 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47555 * 299.99937 * 5 3 2 33 33 H 1.08996 * 109.47179 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46711 * 300.00236 * 6 5 3 35 35 H 1.08998 * 109.47190 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46746 * 60.00278 * 7 6 5 37 37 H 1.09004 * 109.47075 * 305.00028 * 10 8 7 38 38 H 1.09002 * 109.47175 * 185.00378 * 10 8 7 39 39 H 0.97004 * 119.99928 * 0.02562 * 15 14 12 40 40 H 1.09000 * 109.47434 * 24.47289 * 20 11 10 41 41 H 1.09000 * 109.47475 * 144.47672 * 20 11 10 42 42 H 1.09003 * 109.47349 * 303.52006 * 21 20 11 43 43 H 1.09007 * 109.47003 * 63.51794 * 21 20 11 44 44 H 0.96704 * 116.99416 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.46746 * 180.02562 * 25 3 2 46 46 H 1.08996 * 109.47167 * 59.99799 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.2453 1.3699 2.4890 7 6 3.7702 1.3717 2.3632 8 6 4.1749 0.6876 1.0559 9 1 3.8115 -0.3400 1.0558 10 6 5.6997 0.6900 0.9298 11 7 6.2789 -0.1338 1.9938 12 6 6.4720 -1.4746 1.7932 13 1 6.1174 -2.1865 2.5239 14 6 7.1234 -1.9188 0.6507 15 7 6.8703 -3.1190 0.1734 16 14 8.3592 -0.8132 -0.2094 17 1 9.0063 -1.5616 -1.3167 18 1 9.3929 -0.3758 0.7630 19 1 7.6607 0.3769 -0.7581 20 6 6.6516 0.4767 3.2722 21 6 8.1398 0.8314 3.2534 22 6 8.5426 1.3798 4.5981 23 8 7.7235 1.4765 5.4810 24 8 9.8116 1.7598 4.8152 25 6 3.5648 1.4443 -0.1258 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9989 3.1540 1.3075 32 1 0.5489 2.1252 1.3969 33 1 1.9573 1.8574 3.4203 34 1 1.8820 0.3422 2.4889 35 1 4.2048 0.8330 3.2052 36 1 4.1335 2.3994 2.3632 37 1 6.0700 1.7114 1.0188 38 1 5.9847 0.2834 -0.0405 39 1 6.2283 -3.6930 0.6199 40 1 6.0643 1.3817 3.4276 41 1 6.4560 -0.2268 4.0816 42 1 8.7238 -0.0629 3.0360 43 1 8.3248 1.5819 2.4848 44 1 10.0223 2.1049 5.6936 45 1 3.9282 2.4720 -0.1253 46 1 3.8531 0.9569 -1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595431718.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = -115.015589 kcal Electronic energy + Delta-G solvation = -23944.305235 eV Core-core repulsion = 20639.765007 eV Total energy + Delta-G solvation = -3304.540227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88580 -39.17008 -36.31672 -35.69921 -33.03380 -32.11048 -31.32910 -29.77518 -28.80357 -25.42806 -24.66281 -23.24678 -21.90813 -21.57979 -20.59632 -19.61362 -18.02625 -17.80961 -17.33324 -16.11183 -15.74778 -15.38252 -14.73635 -14.52191 -14.51318 -13.84908 -13.48724 -13.28752 -13.22287 -12.93611 -12.66626 -12.44230 -12.35786 -11.99834 -11.85079 -11.45970 -11.31864 -11.23501 -11.15435 -11.04205 -10.76870 -10.55799 -10.47288 -10.28741 -10.26004 -10.08372 -9.93173 -9.63427 -9.50454 -9.36283 -9.19262 -8.33953 -6.98145 -6.17301 -3.60708 2.56527 3.39411 3.43395 3.46898 3.65761 4.54911 4.91240 4.96780 5.09406 5.12126 5.33648 5.38880 5.46767 5.54625 5.56523 5.67834 5.70166 5.77906 5.86984 5.89208 5.97010 5.98959 6.02296 6.06489 6.13028 6.19737 6.24950 6.29975 6.35240 6.42482 6.44798 6.57814 6.58918 6.65669 6.69578 6.72138 6.77850 6.86763 6.92636 7.06547 7.22578 8.19545 8.24545 8.58214 9.02673 9.54698 10.24232 10.98312 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.006071 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.679704 B = 4610.992629 C = 5960.793908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.083 4.083 4 H 0.059 0.941 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.102 4.102 9 H 0.077 0.923 10 C 0.144 3.856 11 N -0.592 5.592 12 C -0.363 4.363 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.899 5.899 16 Si 1.040 2.960 17 H -0.295 1.295 18 H -0.285 1.285 19 H -0.282 1.282 20 C 0.156 3.844 21 C -0.140 4.140 22 C 0.480 3.520 23 O -0.525 6.525 24 O -0.524 6.524 25 C -0.110 4.110 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.268 0.732 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.399 0.601 45 H 0.053 0.947 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 10.924 2.067 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.078 0.922 5 C -0.149 4.149 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.123 4.123 9 H 0.095 0.905 10 C 0.018 3.982 11 N -0.314 5.314 12 C -0.492 4.492 13 H 0.070 0.930 14 C -0.192 4.192 15 N -0.534 5.534 16 Si 0.869 3.131 17 H -0.222 1.222 18 H -0.212 1.212 19 H -0.209 1.209 20 C 0.029 3.971 21 C -0.180 4.180 22 C 0.323 3.677 23 O -0.414 6.414 24 O -0.335 6.335 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.256 0.744 45 H 0.072 0.928 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.592 10.827 0.617 11.776 hybrid contribution -0.732 0.153 1.892 2.034 sum -5.324 10.980 2.510 12.458 Atomic orbital electron populations 1.21818 0.96702 1.01070 1.01242 1.21669 0.94903 0.96787 1.02788 1.21096 0.96121 0.95910 0.97021 0.92207 1.21557 0.99436 0.98831 0.95048 1.21578 0.96805 1.00392 0.96965 1.21565 0.94214 0.99664 0.99023 1.21698 0.98022 0.99627 0.92911 0.90464 1.21351 0.90657 0.93193 0.92980 1.44088 1.69577 1.05995 1.11718 1.19856 1.37987 0.81517 1.09867 0.92987 1.26513 0.98007 0.98453 0.96221 1.70927 1.34581 1.10650 1.37261 0.84177 0.77418 0.75396 0.76069 1.22183 1.21184 1.20897 1.20970 0.88455 0.97024 0.90657 1.22501 1.03530 1.02492 0.89519 1.24230 0.78740 0.73149 0.91531 1.90660 1.52127 1.52023 1.46553 1.84650 1.32110 1.76207 1.40582 1.21604 0.94050 1.00050 0.99073 0.93326 0.93224 0.92819 0.92191 0.90885 0.92645 0.92651 0.93128 0.91943 0.91336 0.93391 0.94928 0.92302 0.92213 0.93089 0.92878 0.87264 0.89009 0.74356 0.92778 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 37.16 0.36 -1.38 16 2 C -0.12 -1.70 4.69 -26.73 -0.13 -1.83 16 3 C -0.08 -1.10 2.66 -90.62 -0.24 -1.34 16 4 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 6 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 7 C -0.11 -1.74 4.22 -26.73 -0.11 -1.85 16 8 C -0.10 -1.81 2.12 -90.62 -0.19 -2.01 16 9 H 0.08 1.59 6.54 -51.93 -0.34 1.25 16 10 C 0.14 2.90 4.05 -4.04 -0.02 2.89 16 11 N -0.59 -13.14 1.60 -173.24 -0.28 -13.42 16 12 C -0.36 -9.57 9.57 -15.06 -0.14 -9.71 16 13 H 0.05 1.53 8.06 -52.49 -0.42 1.10 16 14 C 0.01 0.39 5.13 -17.43 -0.09 0.30 16 15 N -0.90 -26.46 13.71 55.49 0.76 -25.70 16 16 Si 1.04 24.49 27.13 -169.99 -4.61 19.88 16 17 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -6.36 7.07 56.52 0.40 -5.96 16 19 H -0.28 -6.16 5.91 56.52 0.33 -5.83 16 20 C 0.16 3.10 3.89 -4.04 -0.02 3.08 16 21 C -0.14 -2.53 6.10 -27.88 -0.17 -2.70 16 22 C 0.48 8.00 8.33 36.01 0.30 8.30 16 23 O -0.52 -9.90 16.71 -18.75 -0.31 -10.21 16 24 O -0.52 -7.08 13.42 -39.27 -0.53 -7.60 16 25 C -0.11 -1.67 4.73 -26.73 -0.13 -1.80 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 29 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.07 1.12 4.83 -51.93 -0.25 0.87 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 35 H 0.07 1.24 6.08 -51.93 -0.32 0.92 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.06 1.31 4.86 -51.93 -0.25 1.06 16 39 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 40 H 0.05 0.95 6.36 -51.93 -0.33 0.62 16 41 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 42 H 0.11 2.15 8.10 -51.93 -0.42 1.73 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.40 3.42 9.10 45.56 0.41 3.84 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -29.32 348.22 -7.80 -37.12 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.21 Total: 6.12 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.87 Total: -11.43 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.48 Total: -39.12 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.84 Total: -17.81 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.61 Total: 19.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.32 -7.80 -37.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595431718.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.897 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds