Wall clock time and date at job start Tue Mar 31 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.27709 * 2 1 4 4 C 1.54946 * 110.30995 * 122.19846 * 2 1 3 5 5 C 1.55310 * 100.94361 * 155.36142 * 4 2 1 6 6 H 1.08997 * 111.02470 * 84.13504 * 5 4 2 7 7 C 1.50691 * 110.84559 * 207.67627 * 5 4 2 8 8 O 1.21280 * 120.00363 * 7.28049 * 7 5 4 9 9 N 1.34776 * 119.99896 * 187.27897 * 7 5 4 10 10 C 1.46503 * 120.00146 * 3.06707 * 9 7 5 11 11 C 1.50699 * 109.46887 * 84.24957 * 10 9 7 12 12 H 1.08004 * 120.00388 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00121 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99546 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00501 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46915 * 60.00232 * 15 13 11 17 17 H 1.48500 * 109.46965 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.46829 * 300.00403 * 15 13 11 19 19 C 1.46504 * 120.00311 * 183.06153 * 9 7 5 20 20 C 1.53003 * 109.46694 * 89.97171 * 19 9 7 21 21 C 1.52996 * 109.46901 * 57.47201 * 20 19 9 22 22 C 1.53008 * 109.47057 * 177.46983 * 20 19 9 23 23 C 1.53000 * 109.47464 * 297.46887 * 20 19 9 24 24 C 1.54384 * 102.24869 * 325.86203 * 5 4 2 25 25 O 1.43244 * 107.58746 * 21.36401 * 24 5 4 26 26 H 1.08995 * 109.47345 * 180.63727 * 1 2 3 27 27 H 1.09007 * 109.46789 * 300.63856 * 1 2 3 28 28 H 1.08995 * 109.47137 * 60.63483 * 1 2 3 29 29 H 1.09005 * 111.11975 * 273.27598 * 4 2 1 30 30 H 1.08992 * 111.12596 * 37.43608 * 4 2 1 31 31 H 1.08998 * 109.46953 * 204.25272 * 10 9 7 32 32 H 1.09000 * 109.46702 * 324.25387 * 10 9 7 33 33 H 0.97003 * 119.99880 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47372 * 209.97315 * 19 9 7 35 35 H 1.09001 * 109.47126 * 329.97706 * 19 9 7 36 36 H 1.08996 * 109.47523 * 60.00283 * 21 20 19 37 37 H 1.09009 * 109.46878 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47075 * 299.99361 * 21 20 19 39 39 H 1.08998 * 109.46619 * 60.00091 * 22 20 19 40 40 H 1.08996 * 109.47173 * 180.02562 * 22 20 19 41 41 H 1.08997 * 109.46716 * 300.00392 * 22 20 19 42 42 H 1.08998 * 109.46607 * 66.33239 * 23 20 19 43 43 H 1.08996 * 109.47414 * 186.33626 * 23 20 19 44 44 H 1.09003 * 109.46896 * 306.33911 * 23 20 19 45 45 H 1.08994 * 109.83317 * 261.84576 * 24 5 4 46 46 H 1.09007 * 109.90417 * 140.91285 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 1.2296 5 6 3.4700 -1.2032 0.7178 6 1 4.2001 -0.4074 0.8645 7 6 3.9216 -2.4731 1.3919 8 8 3.1586 -3.0821 2.1115 9 7 5.1734 -2.9320 1.1951 10 6 6.1164 -2.1618 0.3803 11 6 6.7743 -1.1087 1.2342 12 1 6.5163 -1.0220 2.2793 13 6 7.7058 -0.2558 0.6812 14 7 8.0197 -0.3610 -0.5917 15 14 8.5220 1.0492 1.7396 16 1 9.2519 0.3959 2.8557 17 1 9.4768 1.8308 0.9134 18 1 7.4857 1.9585 2.2911 19 6 5.5913 -4.2011 1.7961 20 6 5.2928 -5.3469 0.8271 21 6 6.0090 -5.0917 -0.5005 22 6 5.7865 -6.6646 1.4279 23 6 3.7843 -5.4303 0.5851 24 6 3.2112 -1.4413 -0.7855 25 8 2.0286 -0.7156 -1.1413 26 1 -0.3634 -1.0275 0.0114 27 1 -0.3633 0.5238 0.8843 28 1 -0.3633 0.5039 -0.8956 29 1 2.1496 -0.1223 2.0993 30 1 1.4471 -1.6429 1.4492 31 1 6.8772 -2.8296 -0.0237 32 1 5.5811 -1.6827 -0.4394 33 1 8.6753 0.2389 -0.9807 34 1 6.6609 -4.1700 2.0036 35 1 5.0452 -4.3600 2.7260 36 1 7.0836 -5.0324 -0.3282 37 1 5.7967 -5.9083 -1.1907 38 1 5.6572 -4.1531 -0.9285 39 1 5.2762 -6.8463 2.3738 40 1 5.5742 -7.4809 0.7375 41 1 6.8611 -6.6052 1.6004 42 1 3.4516 -4.5379 0.0552 43 1 3.5607 -6.3131 -0.0138 44 1 3.2662 -5.4993 1.5416 45 1 3.0623 -2.5049 -0.9712 46 1 4.0572 -1.0788 -1.3696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331015621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:51 Heat of formation + Delta-G solvation = -105.706421 kcal Electronic energy + Delta-G solvation = -24597.855367 eV Core-core repulsion = 21293.718815 eV Total energy + Delta-G solvation = -3304.136552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11200 -38.53583 -36.59329 -34.42026 -32.40335 -31.99668 -31.34038 -27.76338 -26.97159 -26.80849 -26.16217 -25.33283 -23.24857 -21.85610 -20.92153 -18.83899 -17.92488 -17.06120 -16.48917 -16.00233 -15.64543 -15.03993 -14.80136 -14.50556 -14.11962 -13.86257 -13.48014 -13.34887 -13.11649 -12.70380 -12.41015 -12.29921 -12.13860 -12.05688 -11.84226 -11.66213 -11.42946 -11.28548 -11.14020 -11.01254 -10.90177 -10.77589 -10.66620 -10.55406 -10.49817 -10.37758 -10.24153 -10.05487 -9.73297 -9.27604 -8.93084 -8.58678 -7.69085 -6.22183 -4.30017 3.20791 3.26510 3.27041 3.34719 3.84241 4.11537 4.30306 4.81842 5.02676 5.10729 5.16087 5.18360 5.26009 5.34054 5.40851 5.49047 5.57408 5.70226 5.82165 5.85833 5.90187 5.91204 5.96540 6.06974 6.11127 6.18396 6.18653 6.19655 6.27353 6.30243 6.32068 6.38681 6.48017 6.54434 6.59564 6.68556 6.77939 6.84450 7.14723 7.31697 7.52851 7.73208 8.02943 8.31077 8.75291 8.99804 9.38143 10.83943 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.008557 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.789539 B = 3271.579530 C = 5278.134709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.132 4.132 5 C -0.142 4.142 6 H 0.123 0.877 7 C 0.530 3.470 8 O -0.568 6.568 9 N -0.589 5.589 10 C 0.231 3.769 11 C -0.542 4.542 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.129 3.871 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.128 4.128 24 C 0.071 3.929 25 O -0.382 6.382 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -4.512 0.605 8.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.170 4.170 5 C -0.163 4.163 6 H 0.141 0.859 7 C 0.318 3.682 8 O -0.450 6.450 9 N -0.319 5.319 10 C 0.112 3.888 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.006 3.994 20 C -0.087 4.087 21 C -0.197 4.197 22 C -0.193 4.193 23 C -0.186 4.186 24 C -0.006 4.006 25 O -0.302 6.302 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.969 -4.744 0.609 9.294 hybrid contribution 0.960 0.866 0.684 1.463 sum -7.008 -3.878 1.293 8.113 Atomic orbital electron populations 1.21863 0.94064 1.02642 1.01955 1.22961 0.94509 0.95696 0.85165 0.91216 1.23202 0.95090 1.00965 0.97755 1.22835 0.98983 0.98785 0.95682 0.85925 1.19932 0.81848 0.85292 0.81095 1.90573 1.54353 1.59996 1.40036 1.48137 1.11975 1.21170 1.50569 1.19619 0.87960 0.90879 0.90373 1.21488 1.23670 1.16193 0.96734 0.92251 1.24923 0.96294 0.97419 0.95007 1.69905 1.32938 1.38370 1.11445 0.86603 0.79369 0.81511 0.80291 1.20152 1.21098 1.20111 1.21375 1.00137 0.82532 0.95401 1.20971 0.96098 0.95146 0.96438 1.21943 1.00207 1.01580 0.95949 1.21783 1.00866 0.96281 1.00413 1.21799 0.94703 1.00449 1.01626 1.23027 0.87858 0.96335 0.93401 1.88365 1.42832 1.64962 1.34028 0.92017 0.91441 0.92154 0.90123 0.89161 0.93773 0.94425 0.92407 0.90677 0.91024 0.92597 0.93676 0.91726 0.92866 0.92903 0.92691 0.93145 0.93969 0.92204 0.91802 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.62 37.16 0.36 -1.43 16 2 C 0.07 1.10 4.07 -25.71 -0.10 1.00 16 3 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 4 C -0.13 -2.12 5.76 -24.48 -0.14 -2.26 16 5 C -0.14 -2.62 2.40 -89.83 -0.22 -2.84 16 6 H 0.12 2.47 7.11 -51.93 -0.37 2.10 16 7 C 0.53 10.66 5.28 -10.99 -0.06 10.60 16 8 O -0.57 -12.13 13.54 5.56 0.08 -12.05 16 9 N -0.59 -11.82 2.00 -175.06 -0.35 -12.17 16 10 C 0.23 5.20 3.50 -5.19 -0.02 5.19 16 11 C -0.54 -13.65 8.63 -34.44 -0.30 -13.94 16 12 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 15 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.13 2.33 4.58 -4.04 -0.02 2.31 16 20 C -0.09 -1.32 0.85 -154.50 -0.13 -1.45 16 21 C -0.14 -2.20 7.18 37.16 0.27 -1.93 16 22 C -0.14 -1.75 8.47 37.16 0.31 -1.44 16 23 C -0.13 -2.05 7.11 37.16 0.26 -1.78 16 24 C 0.07 1.26 6.57 37.88 0.25 1.51 16 25 O -0.38 -6.67 11.04 -35.23 -0.39 -7.06 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.52 7.18 -51.93 -0.37 1.15 16 31 H 0.04 1.04 6.30 -51.93 -0.33 0.71 16 32 H 0.04 0.87 5.08 -51.93 -0.26 0.61 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.32 7.38 -51.93 -0.38 0.94 16 36 H 0.05 0.89 7.95 -51.93 -0.41 0.48 16 37 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 1.14 6.13 -51.93 -0.32 0.82 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.89 6.35 -51.93 -0.33 0.56 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.01 7.57 -51.93 -0.39 0.62 16 45 H 0.06 1.14 7.47 -51.93 -0.39 0.75 16 46 H 0.08 1.55 6.90 -51.92 -0.36 1.19 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -27.19 351.26 -7.39 -34.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.11 Total: 4.11 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.37 Total: -4.84 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.39 Total: -35.22 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.31 Total: -19.11 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.19 -7.39 -34.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331015621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.125 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds