Wall clock time and date at job start Tue Mar 31 2020 05:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 H 1.09002 * 109.47030 * 54.45063 * 3 2 1 5 5 O 1.42903 * 109.46913 * 294.45829 * 3 2 1 6 6 C 1.42898 * 114.00317 * 152.17671 * 5 3 2 7 7 H 1.09000 * 109.46723 * 27.51895 * 6 5 3 8 8 C 1.52997 * 109.47280 * 267.51710 * 6 5 3 9 9 C 1.53002 * 109.47105 * 300.00033 * 8 6 5 10 10 C 1.53001 * 109.47191 * 300.00174 * 9 8 6 11 11 C 1.53002 * 109.47267 * 59.99580 * 10 9 8 12 12 H 1.08999 * 109.46453 * 60.00583 * 11 10 9 13 13 C 1.52997 * 109.47009 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47243 * 300.00506 * 11 10 9 15 15 C 1.50694 * 109.47483 * 174.45924 * 3 2 1 16 16 O 1.21276 * 120.00272 * 119.99902 * 15 3 2 17 17 N 1.34784 * 119.99757 * 299.99347 * 15 3 2 18 18 C 1.46498 * 119.99992 * 180.02562 * 17 15 3 19 19 C 1.50703 * 109.47209 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99752 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46823 * 60.00462 * 23 21 19 25 25 H 1.48501 * 109.47350 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47360 * 300.00384 * 23 21 19 27 27 H 1.09009 * 109.46678 * 56.07531 * 1 2 3 28 28 H 1.08998 * 109.47195 * 176.06896 * 1 2 3 29 29 H 1.08992 * 109.47811 * 296.07513 * 1 2 3 30 30 H 1.09001 * 109.47994 * 239.99632 * 2 1 3 31 31 H 1.09007 * 109.47071 * 119.99302 * 2 1 3 32 32 H 1.09002 * 109.47157 * 59.99589 * 8 6 5 33 33 H 1.08994 * 109.47144 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47235 * 59.99512 * 9 8 6 35 35 H 1.08999 * 109.47059 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47258 * 180.02562 * 10 9 8 37 37 H 1.09011 * 109.46908 * 300.00031 * 10 9 8 38 38 H 1.09000 * 109.47543 * 60.00118 * 13 11 10 39 39 H 1.08999 * 109.47081 * 180.02562 * 13 11 10 40 40 H 1.09003 * 109.47402 * 300.00131 * 13 11 10 41 41 H 1.09006 * 109.47501 * 299.99888 * 14 11 10 42 42 H 1.09005 * 109.47299 * 180.02562 * 14 11 10 43 43 H 0.97001 * 119.99909 * 0.02562 * 17 15 3 44 44 H 1.09004 * 109.46987 * 299.99934 * 18 17 15 45 45 H 1.08999 * 109.47228 * 60.00484 * 18 17 15 46 46 H 0.97001 * 120.00015 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8361 5 8 1.6729 2.0775 -1.2264 6 6 1.5137 3.4938 -1.1228 7 1 2.1432 3.8721 -0.3174 8 6 0.0497 3.8219 -0.8229 9 6 -0.8339 3.2908 -1.9534 10 6 -0.4239 3.9480 -3.2729 11 6 1.0402 3.6199 -3.5727 12 1 1.1615 2.5396 -3.6518 13 6 1.4503 4.2776 -4.8918 14 6 1.9237 4.1510 -2.4422 15 6 3.5407 1.4448 0.1372 16 8 4.2281 1.9412 -0.7298 17 7 4.1189 0.8951 1.2236 18 6 5.5777 0.8977 1.3572 19 6 5.9649 0.2275 2.6503 20 1 5.2007 -0.1611 3.3070 21 6 7.2947 0.1105 2.9949 22 7 8.2253 0.5842 2.1954 23 14 7.7746 -0.7196 4.5980 24 1 7.2795 -2.1197 4.5979 25 1 9.2534 -0.7171 4.7335 26 1 7.1724 0.0183 5.7372 27 1 -0.3633 0.5736 -0.8528 28 1 -0.3633 -1.0252 -0.0705 29 1 -0.3634 0.4517 0.9230 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 -0.2424 3.3537 0.1171 33 1 -0.0716 4.9022 -0.7434 34 1 -0.7125 2.2105 -2.0325 35 1 -1.8769 3.5242 -1.7395 36 1 -1.0537 3.5699 -4.0782 37 1 -0.5453 5.0284 -3.1938 38 1 1.3290 5.3579 -4.8124 39 1 2.4932 4.0435 -5.1057 40 1 0.8209 3.8996 -5.6975 41 1 1.8024 5.2313 -2.3631 42 1 2.9668 3.9176 -2.6561 43 1 3.5690 0.4977 1.9169 44 1 6.0202 0.3562 0.5210 45 1 5.9407 1.9255 1.3575 46 1 9.1610 0.5016 2.4376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331206363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:03 Heat of formation + Delta-G solvation = -126.802249 kcal Electronic energy + Delta-G solvation = -23506.733218 eV Core-core repulsion = 20201.681883 eV Total energy + Delta-G solvation = -3305.051335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.90336 -38.50759 -36.29334 -34.22796 -33.42924 -32.28121 -32.12947 -29.88845 -28.07272 -26.44539 -26.10401 -22.75226 -22.49606 -21.69726 -21.26322 -19.84814 -19.37992 -17.37844 -16.52708 -15.88940 -15.67787 -15.16114 -14.83595 -14.58466 -14.25900 -14.10387 -13.97357 -13.66868 -13.37223 -12.94632 -12.74730 -12.50372 -12.20071 -12.01151 -11.91213 -11.83713 -11.79919 -11.65717 -11.47879 -11.14969 -11.00310 -10.90978 -10.84928 -10.70217 -10.57941 -10.33890 -10.30477 -9.93548 -9.69569 -9.41412 -8.73128 -8.59403 -7.87069 -6.16672 -4.23932 3.24718 3.29469 3.30786 3.31994 3.71102 4.15639 4.37698 4.69539 4.71790 4.79287 5.01148 5.04181 5.13278 5.15983 5.19255 5.28156 5.31857 5.37811 5.47069 5.51655 5.58755 5.64899 5.70952 5.75606 5.80828 5.83951 5.85813 5.97431 6.00328 6.01065 6.11567 6.19267 6.23766 6.29608 6.38671 6.45614 6.55196 7.26370 7.36957 7.45931 7.52068 7.67504 7.97062 8.62777 8.78306 9.10954 9.42812 10.93470 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.003625 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.209553 B = 7721.774925 C = 8362.289733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.077 0.923 5 O -0.343 6.343 6 C 0.093 3.907 7 H 0.059 0.941 8 C -0.140 4.140 9 C -0.114 4.114 10 C -0.112 4.112 11 C -0.088 4.088 12 H 0.079 0.921 13 C -0.147 4.147 14 C -0.108 4.108 15 C 0.473 3.527 16 O -0.541 6.541 17 N -0.712 5.712 18 C 0.250 3.750 19 C -0.544 4.544 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.886 5.886 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.389 0.611 44 H 0.026 0.974 45 H 0.025 0.975 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.336 4.773 -6.916 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.095 0.905 5 O -0.260 6.260 6 C 0.035 3.965 7 H 0.077 0.923 8 C -0.178 4.178 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.106 4.106 12 H 0.097 0.903 13 C -0.204 4.204 14 C -0.146 4.146 15 C 0.257 3.743 16 O -0.419 6.419 17 N -0.362 5.362 18 C 0.130 3.870 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.221 0.779 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.632 5.066 -7.748 20.805 hybrid contribution 0.271 -0.446 1.539 1.625 sum -18.361 4.620 -6.209 19.925 Atomic orbital electron populations 1.21760 0.94968 1.01733 1.02093 1.21558 0.96638 0.93460 1.03649 1.22135 0.92194 0.95725 0.88749 0.90485 1.87968 1.88286 1.19323 1.30437 1.22046 0.94477 0.81778 0.98232 0.92283 1.22048 0.95962 1.00986 0.98766 1.21436 0.97955 1.01283 0.94420 1.21583 0.96151 1.00087 0.97097 1.21035 0.94174 1.01266 0.94142 0.90262 1.21836 1.01376 1.00250 0.96974 1.21653 1.00791 0.98732 0.93414 1.21209 0.90557 0.79671 0.82873 1.90656 1.64713 1.45855 1.40682 1.46516 1.10852 1.57905 1.20927 1.19083 0.73398 0.97542 0.97012 1.21190 0.92519 1.39563 1.04952 0.91971 1.24951 0.96213 0.95370 0.97452 1.69968 1.00744 1.44789 1.36784 0.86477 0.77487 0.79883 0.83077 1.20040 1.21065 1.20076 0.91752 0.92619 0.92988 0.90553 0.90110 0.92035 0.91406 0.91046 0.92681 0.92414 0.92527 0.93104 0.92586 0.93052 0.91428 0.90530 0.77854 0.95570 0.95679 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.85 37.15 0.37 -1.13 16 2 C -0.12 -1.47 5.59 -26.73 -0.15 -1.62 16 3 C 0.07 1.11 2.33 -27.88 -0.06 1.04 16 4 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 5 O -0.34 -5.19 7.34 -55.14 -0.40 -5.59 16 6 C 0.09 1.24 2.60 -26.73 -0.07 1.17 16 7 H 0.06 0.87 7.71 -51.93 -0.40 0.47 16 8 C -0.14 -1.47 5.66 -26.73 -0.15 -1.62 16 9 C -0.11 -1.11 5.78 -26.73 -0.15 -1.26 16 10 C -0.11 -1.08 5.20 -26.73 -0.14 -1.22 16 11 C -0.09 -1.00 2.58 -90.62 -0.23 -1.24 16 12 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 13 C -0.15 -1.49 9.19 37.16 0.34 -1.15 16 14 C -0.11 -1.40 4.94 -26.73 -0.13 -1.54 16 15 C 0.47 9.63 7.10 -10.99 -0.08 9.56 16 16 O -0.54 -13.36 16.41 -14.35 -0.24 -13.60 16 17 N -0.71 -15.05 5.41 -61.47 -0.33 -15.38 16 18 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 19 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 20 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.06 0.67 6.41 -51.92 -0.33 0.34 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.97 7.41 -51.92 -0.38 0.59 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.77 6.35 -51.93 -0.33 0.44 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.39 7.00 7.68 -40.82 -0.31 6.69 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -31.63 363.39 -9.13 -40.77 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.44 Total: 3.73 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.91 Total: -5.75 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.40 Total: -40.85 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.64 Total: -19.19 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.63 -9.13 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331206363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.035 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds