Wall clock time and date at job start Tue Mar 31 2020 05:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47392 * 2 1 4 4 H 1.08998 * 109.47408 * 54.92607 * 3 2 1 5 5 O 1.42906 * 109.46898 * 294.92641 * 3 2 1 6 6 C 1.42899 * 114.00253 * 153.96816 * 5 3 2 7 7 C 1.54268 * 110.03471 * 271.61920 * 6 5 3 8 8 C 1.54884 * 104.19756 * 217.10446 * 7 6 5 9 9 C 1.54885 * 102.74838 * 37.93936 * 8 7 6 10 10 C 1.53875 * 110.03348 * 154.45214 * 6 5 3 11 11 C 1.50701 * 109.47458 * 174.92872 * 3 2 1 12 12 O 1.21279 * 119.99659 * 107.79744 * 11 3 2 13 13 N 1.34772 * 120.00061 * 287.79802 * 11 3 2 14 14 C 1.46495 * 120.00105 * 184.35560 * 13 11 3 15 15 C 1.46500 * 119.99709 * 4.36308 * 13 11 3 16 16 H 1.09000 * 109.47271 * 358.05268 * 15 13 11 17 17 C 1.52994 * 109.47376 * 118.05813 * 15 13 11 18 18 C 1.50702 * 109.46682 * 238.05704 * 15 13 11 19 19 H 1.07997 * 120.00199 * 359.97438 * 18 15 13 20 20 C 1.37880 * 120.00099 * 179.97438 * 18 15 13 21 21 N 1.31514 * 119.99678 * 0.02562 * 20 18 15 22 22 Si 1.86792 * 120.00229 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47368 * 90.00174 * 22 20 18 24 24 H 1.48506 * 109.47144 * 209.99896 * 22 20 18 25 25 H 1.48499 * 109.47505 * 330.00020 * 22 20 18 26 26 H 1.09006 * 109.46730 * 305.07716 * 1 2 3 27 27 H 1.08996 * 109.47169 * 65.07888 * 1 2 3 28 28 H 1.09001 * 109.47132 * 185.08429 * 1 2 3 29 29 H 1.08996 * 109.47286 * 239.99654 * 2 1 3 30 30 H 1.09006 * 109.47575 * 119.99929 * 2 1 3 31 31 H 1.09005 * 110.01201 * 33.05784 * 6 5 3 32 32 H 1.08997 * 110.48588 * 335.78457 * 7 6 5 33 33 H 1.09001 * 110.48647 * 98.42278 * 7 6 5 34 34 H 1.09005 * 110.75569 * 279.62930 * 8 7 6 35 35 H 1.08997 * 110.91886 * 156.33362 * 8 7 6 36 36 H 1.08999 * 110.49007 * 203.37809 * 9 8 7 37 37 H 1.09005 * 110.59937 * 80.79161 * 9 8 7 38 38 H 1.08997 * 110.02809 * 238.57373 * 10 6 5 39 39 H 1.09003 * 110.03117 * 359.97438 * 10 6 5 40 40 H 1.08995 * 109.47865 * 275.15346 * 14 13 11 41 41 H 1.09002 * 109.46930 * 35.15537 * 14 13 11 42 42 H 1.09001 * 109.46730 * 155.14976 * 14 13 11 43 43 H 1.08999 * 109.46730 * 299.99566 * 17 15 13 44 44 H 1.09000 * 109.47367 * 59.99513 * 17 15 13 45 45 H 1.08998 * 109.47497 * 179.97438 * 17 15 13 46 46 H 0.96998 * 120.00144 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9819 0.8410 5 8 1.6635 2.0808 -1.2218 6 6 1.5445 3.5014 -1.1228 7 6 0.1138 3.8831 -0.6902 8 6 -0.1920 5.1756 -1.4869 9 6 0.4747 4.8982 -2.8572 10 6 1.7739 4.1469 -2.5007 11 6 3.5418 1.4443 0.1256 12 8 4.2298 1.7365 -0.8295 13 7 4.1203 1.1213 1.2992 14 6 5.5745 1.2152 1.4494 15 6 3.2948 0.6761 2.4247 16 1 2.2437 0.7029 2.1373 17 6 3.6827 -0.7534 2.8076 18 6 3.5169 1.5896 3.6026 19 1 4.2044 2.4184 3.5211 20 6 2.8423 1.3671 4.7843 21 7 2.0054 0.3574 4.8837 22 14 3.1180 2.4988 6.2446 23 1 2.1477 3.6216 6.1909 24 1 2.9244 1.7371 7.5046 25 1 4.5012 3.0373 6.1993 26 1 -0.3633 0.5906 0.8411 27 1 -0.3633 0.4330 -0.9319 28 1 -0.3633 -1.0236 0.0911 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2680 3.8872 -0.4046 32 1 -0.5891 3.0943 -0.9584 33 1 0.0786 4.0782 0.3816 34 1 0.2609 6.0424 -1.0054 35 1 -1.2666 5.3170 -1.6016 36 1 0.7029 5.8343 -3.3669 37 1 -0.1689 4.2743 -3.4774 38 1 2.6082 4.8465 -2.4509 39 1 1.9765 3.3765 -3.2448 40 1 6.0374 0.2979 1.0857 41 1 5.9453 2.0627 0.8729 42 1 5.8227 1.3550 2.5015 43 1 3.5220 -1.4140 1.9556 44 1 4.7338 -0.7802 3.0950 45 1 3.0688 -1.0845 3.6453 46 1 1.5311 0.2007 5.7151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331325821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:40 Heat of formation + Delta-G solvation = -101.754816 kcal Electronic energy + Delta-G solvation = -24360.292379 eV Core-core repulsion = 21056.327182 eV Total energy + Delta-G solvation = -3303.965197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76422 -38.22247 -35.88137 -35.53476 -32.91008 -32.61176 -29.22082 -28.61331 -28.14127 -27.26724 -25.37401 -24.89513 -21.76823 -21.16504 -20.64990 -20.14284 -18.45234 -17.08377 -16.57123 -16.24848 -15.69130 -15.10077 -14.56511 -14.49258 -14.36736 -13.84648 -13.55539 -13.26107 -13.21463 -12.65071 -12.42734 -12.09591 -11.91501 -11.81529 -11.54874 -11.50132 -11.31922 -11.07606 -11.05019 -11.01666 -10.98631 -10.76327 -10.63316 -10.57178 -10.52581 -10.29395 -10.24321 -10.15833 -9.76420 -9.34158 -8.63067 -8.48611 -7.64627 -6.22870 -4.31401 3.17988 3.25827 3.27838 3.35525 3.75083 4.16617 4.29791 4.69234 4.72056 5.01114 5.08177 5.21968 5.36662 5.43836 5.48472 5.56383 5.61847 5.69008 5.72894 5.83391 5.90840 5.94382 5.98969 6.11790 6.14040 6.17247 6.22700 6.26963 6.33427 6.36943 6.38487 6.44577 6.48066 6.55660 6.65858 6.71883 6.88358 7.17135 7.33333 7.54849 7.66027 7.80670 8.07404 8.42887 8.71475 9.01258 9.37085 10.81712 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.005625 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.397939 B = 4976.559014 C = 5402.934924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.080 3.920 4 H 0.089 0.911 5 O -0.351 6.351 6 C 0.087 3.913 7 C -0.150 4.150 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.118 4.118 11 C 0.484 3.516 12 O -0.561 6.561 13 N -0.591 5.591 14 C 0.096 3.904 15 C 0.247 3.753 16 H 0.059 0.941 17 C -0.151 4.151 18 C -0.532 4.532 19 H 0.062 0.938 20 C 0.068 3.932 21 N -0.886 5.886 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.014 0.986 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 3.713 -8.383 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.106 0.894 5 O -0.269 6.269 6 C 0.029 3.971 7 C -0.188 4.188 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.155 4.155 11 C 0.271 3.729 12 O -0.441 6.441 13 N -0.323 5.323 14 C -0.048 4.048 15 C 0.146 3.854 16 H 0.076 0.924 17 C -0.210 4.210 18 C -0.570 4.570 19 H 0.080 0.920 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.113 0.887 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.928 3.665 -8.897 10.393 hybrid contribution 0.296 0.680 1.324 1.517 sum -3.633 4.344 -7.574 9.457 Atomic orbital electron populations 1.21674 0.94851 1.01542 1.01977 1.21703 0.97031 0.93278 1.03749 1.22063 0.91425 0.96136 0.88440 0.89373 1.87969 1.88163 1.18765 1.32018 1.22742 0.95483 0.81530 0.97376 1.22958 0.97606 0.98014 1.00205 1.22415 1.00263 0.97533 0.95799 1.22338 0.96714 0.99756 0.97151 1.22132 0.97503 0.99254 0.96633 1.21269 0.91203 0.77649 0.82811 1.90591 1.65019 1.50387 1.38108 1.48319 1.07595 1.63800 1.12589 1.21382 0.81096 1.00030 1.02269 1.19206 0.90758 0.92244 0.83171 0.92360 1.22138 1.01019 0.96969 1.00841 1.21347 1.26374 1.12821 0.96490 0.91999 1.24874 0.94731 0.95352 0.98535 1.69847 1.27016 1.28461 1.27092 0.86506 0.78746 0.80566 0.81715 1.20556 1.21020 1.19841 0.92453 0.92472 0.92696 0.91351 0.88696 0.92143 0.90419 0.91346 0.91556 0.91573 0.91831 0.91557 0.91316 0.90357 0.94269 0.92748 0.90303 0.96733 0.94753 0.88651 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.76 37.16 0.36 -1.75 16 2 C -0.12 -2.07 5.18 -26.73 -0.14 -2.21 16 3 C 0.08 1.53 1.50 -27.88 -0.04 1.49 16 4 H 0.09 1.73 6.98 -51.93 -0.36 1.36 16 5 O -0.35 -6.41 8.75 -54.84 -0.48 -6.89 16 6 C 0.09 1.39 3.14 -25.61 -0.08 1.31 16 7 C -0.15 -2.03 6.47 -25.07 -0.16 -2.19 16 8 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 9 C -0.12 -1.36 6.83 -25.08 -0.17 -1.53 16 10 C -0.12 -1.63 6.61 -25.61 -0.17 -1.80 16 11 C 0.48 10.51 6.78 -10.99 -0.07 10.43 16 12 O -0.56 -13.41 16.26 -14.05 -0.23 -13.64 16 13 N -0.59 -12.80 2.75 -175.27 -0.48 -13.29 16 14 C 0.10 1.89 9.35 59.84 0.56 2.45 16 15 C 0.25 5.63 1.74 -69.08 -0.12 5.51 16 16 H 0.06 1.37 4.43 -51.93 -0.23 1.14 16 17 C -0.15 -3.34 8.66 37.15 0.32 -3.01 16 18 C -0.53 -13.29 7.93 -34.44 -0.27 -13.56 16 19 H 0.06 1.57 7.29 -52.49 -0.38 1.19 16 20 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -22.76 11.32 55.43 0.63 -22.14 16 22 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.09 1.75 4.92 -51.93 -0.26 1.50 16 31 H 0.06 1.07 7.76 -51.93 -0.40 0.66 16 32 H 0.08 1.04 8.08 -51.93 -0.42 0.63 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.16 7.95 -51.93 -0.41 0.74 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 42 H 0.08 1.54 6.96 -51.93 -0.36 1.18 16 43 H 0.01 0.28 7.48 -51.93 -0.39 -0.11 16 44 H 0.03 0.74 7.72 -51.93 -0.40 0.33 16 45 H 0.10 2.28 6.07 -51.93 -0.32 1.97 16 46 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -27.66 357.07 -8.56 -36.22 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.10 Total: 4.32 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.25 Total: -4.80 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.14 Total: -35.42 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.71 Total: -20.53 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.66 -8.56 -36.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331325821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.531 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds