Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99844 * 2 1 4 4 O 1.20821 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00039 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46210 * 32.01070 * 5 3 2 7 7 C 1.53036 * 109.46118 * 272.03181 * 5 3 2 8 8 C 1.53123 * 109.27972 * 180.81398 * 7 5 3 9 9 H 1.08990 * 109.52614 * 177.55942 * 8 7 5 10 10 C 1.52996 * 109.52178 * 297.75363 * 8 7 5 11 11 C 1.53123 * 109.15839 * 57.65632 * 8 7 5 12 12 C 1.53040 * 109.27404 * 302.34645 * 11 8 7 13 13 N 1.46844 * 109.51846 * 59.18655 * 12 11 8 14 14 C 1.46901 * 111.00288 * 174.14928 * 13 12 11 15 15 C 1.53002 * 109.46762 * 62.41542 * 14 13 12 16 16 H 1.08995 * 109.47384 * 326.18682 * 15 14 13 17 17 C 1.53009 * 109.46914 * 86.18369 * 15 14 13 18 18 C 1.52998 * 109.47165 * 206.18351 * 15 14 13 19 19 C 1.50700 * 109.47307 * 175.00372 * 18 15 14 20 20 H 1.08008 * 119.99980 * 359.97438 * 19 18 15 21 21 C 1.37868 * 120.00289 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00222 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47237 * 60.00494 * 23 21 19 25 25 H 1.48507 * 109.47211 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47277 * 300.00061 * 23 21 19 27 27 H 1.08992 * 109.47399 * 300.00223 * 1 2 3 28 28 H 1.09003 * 109.47293 * 60.00575 * 1 2 3 29 29 H 1.09003 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.50726 * 60.87696 * 7 5 3 31 31 H 1.08998 * 109.54007 * 300.77553 * 7 5 3 32 32 H 1.09003 * 109.47284 * 179.68147 * 10 8 7 33 33 H 1.08996 * 109.47314 * 299.67737 * 10 8 7 34 34 H 1.09000 * 109.47546 * 59.67900 * 10 8 7 35 35 H 1.08999 * 109.50105 * 182.40884 * 11 8 7 36 36 H 1.08997 * 109.50612 * 62.28653 * 11 8 7 37 37 H 1.09003 * 109.46135 * 179.19472 * 12 11 8 38 38 H 1.08998 * 109.46408 * 299.17067 * 12 11 8 39 39 H 1.08998 * 109.47133 * 182.41193 * 14 13 12 40 40 H 1.08992 * 109.47322 * 302.41701 * 14 13 12 41 41 H 1.08994 * 109.47001 * 50.17104 * 17 15 14 42 42 H 1.08995 * 109.46717 * 170.17238 * 17 15 14 43 43 H 1.08999 * 109.47046 * 290.17043 * 17 15 14 44 44 H 1.09001 * 109.46996 * 295.00160 * 18 15 14 45 45 H 1.08991 * 109.47098 * 54.99914 * 18 15 14 46 46 H 0.97000 * 120.00013 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9748 0.4236 -0.5439 7 6 4.0776 1.2508 1.4428 8 6 5.6055 1.3517 1.4393 9 1 5.9711 1.3785 2.4657 10 6 6.1962 0.1397 0.7162 11 6 6.0228 2.6339 0.7138 12 6 5.4551 2.6178 -0.7073 13 7 3.9909 2.5212 -0.6496 14 6 3.4021 2.6427 -1.9900 15 6 3.8861 1.4856 -2.8663 16 1 4.9067 1.2221 -2.5891 17 6 2.9733 0.2747 -2.6621 18 6 3.8500 1.9094 -4.3360 19 6 4.4411 0.8163 -5.1886 20 1 4.8063 -0.0899 -4.7282 21 6 4.5156 0.9730 -6.5564 22 7 4.0713 2.0766 -7.1170 23 14 5.2488 -0.3817 -7.6131 24 1 4.4608 -1.6280 -7.4373 25 1 5.2137 0.0296 -9.0397 26 1 6.6553 -0.6232 -7.2026 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7756 0.3187 1.9205 31 1 3.6585 2.0938 1.9923 32 1 7.2836 0.2151 0.7093 33 1 5.8987 -0.7725 1.2333 34 1 5.8273 0.1129 -0.3091 35 1 7.1105 2.6899 0.6705 36 1 5.6343 3.4990 1.2511 37 1 5.7384 3.5360 -1.2220 38 1 5.8546 1.7601 -1.2484 39 1 2.3152 2.6106 -1.9136 40 1 3.7072 3.5889 -2.4365 41 1 1.9330 0.5817 -2.7698 42 1 3.2068 -0.4859 -3.4071 43 1 3.1300 -0.1341 -1.6639 44 1 2.8178 2.0874 -4.6376 45 1 4.4290 2.8238 -4.4648 46 1 4.1234 2.1867 -8.0793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -92.198447 kcal Electronic energy + Delta-G solvation = -24605.623124 eV Core-core repulsion = 21302.072322 eV Total energy + Delta-G solvation = -3303.550802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00317 -39.05720 -36.31655 -35.95620 -33.32307 -31.66145 -31.51984 -28.19348 -27.63081 -26.90028 -25.79367 -23.88934 -23.54932 -22.08646 -20.66606 -19.48023 -18.30944 -17.59529 -16.81420 -16.32718 -16.11856 -15.44011 -14.97460 -14.61309 -14.46919 -14.24496 -13.92606 -13.53782 -13.16050 -12.98442 -12.69376 -12.51716 -12.31291 -12.07716 -11.98311 -11.64886 -11.59344 -11.38826 -11.20583 -10.93724 -10.87182 -10.83668 -10.73445 -10.49804 -10.44570 -10.32631 -10.13769 -9.92948 -9.65996 -9.32997 -9.10119 -8.34433 -7.78883 -5.98755 -4.00871 2.36144 2.73906 3.32048 3.36994 3.38842 4.11775 4.45706 4.65764 4.70085 4.84696 5.05958 5.12372 5.15217 5.21655 5.23205 5.36354 5.40787 5.46967 5.53843 5.56856 5.65017 5.71879 5.74486 5.87737 5.91508 5.95561 6.01171 6.08603 6.14272 6.23818 6.36332 6.38084 6.43948 6.47634 6.51675 6.84852 7.02296 7.08540 7.25003 7.39410 7.66612 7.82133 7.96222 8.00175 8.43308 9.04872 9.62549 11.12262 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.005420 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.649523 B = 5165.113495 C = 5946.222768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.471 3.529 4 O -0.490 6.490 5 C 0.086 3.914 6 H 0.092 0.908 7 C -0.104 4.104 8 C -0.089 4.089 9 H 0.074 0.926 10 C -0.157 4.157 11 C -0.114 4.114 12 C 0.051 3.949 13 N -0.516 5.516 14 C 0.045 3.955 15 C -0.125 4.125 16 H 0.062 0.938 17 C -0.148 4.148 18 C 0.033 3.967 19 C -0.515 4.515 20 H 0.054 0.946 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -3.336 18.335 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.313 3.687 4 O -0.376 6.376 5 C -0.023 4.023 6 H 0.109 0.891 7 C -0.142 4.142 8 C -0.107 4.107 9 H 0.093 0.907 10 C -0.214 4.214 11 C -0.151 4.151 12 C -0.076 4.076 13 N -0.242 5.242 14 C -0.082 4.082 15 C -0.145 4.145 16 H 0.080 0.920 17 C -0.205 4.205 18 C -0.004 4.004 19 C -0.554 4.554 20 H 0.072 0.928 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.598 -2.545 18.452 18.636 hybrid contribution 0.344 -1.303 -1.359 1.914 sum -0.254 -3.849 17.093 17.523 Atomic orbital electron populations 1.23223 0.76687 1.03463 1.02434 1.86521 1.23145 1.33690 1.84305 1.23534 0.91781 0.81307 0.72113 1.90639 1.66806 1.36213 1.43906 1.21548 0.87129 0.95580 0.98070 0.89099 1.21627 0.96191 1.02708 0.93650 1.21118 0.94134 0.95644 0.99814 0.90713 1.21999 1.00874 0.97311 1.01224 1.21672 1.00039 0.97567 0.95870 1.22189 0.86506 1.02237 0.96666 1.62097 1.08949 1.32023 1.21088 1.22663 1.00035 0.99742 0.85801 1.21911 0.98377 0.94541 0.99638 0.92023 1.22201 0.98777 0.99258 1.00264 1.19060 0.97147 0.96404 0.87823 1.21185 1.39893 1.02711 0.91588 0.92793 1.25012 0.95674 0.95553 0.98174 1.69957 1.46948 1.25776 1.10767 0.86713 0.79726 0.82409 0.79471 1.20321 1.21314 1.20309 0.92199 0.91798 0.88274 0.90936 0.90590 0.92414 0.92617 0.91975 0.91325 0.91105 0.90017 0.93174 0.90523 0.90241 0.94195 0.91334 0.93923 0.96653 0.96646 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.13 9.66 -39.25 -0.38 -5.50 16 3 C 0.47 7.48 4.57 36.01 0.16 7.65 16 4 O -0.49 -9.00 14.86 -18.75 -0.28 -9.27 16 5 C 0.09 1.25 1.42 -68.87 -0.10 1.15 16 6 H 0.09 1.36 3.62 -51.93 -0.19 1.17 16 7 C -0.10 -1.20 4.86 -26.65 -0.13 -1.33 16 8 C -0.09 -0.90 3.22 -90.49 -0.29 -1.19 16 9 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 10 C -0.16 -1.60 8.61 37.16 0.32 -1.28 16 11 C -0.11 -1.25 5.60 -26.65 -0.15 -1.40 16 12 C 0.05 0.71 4.80 -3.83 -0.02 0.70 16 13 N -0.52 -8.18 4.45 -228.08 -1.02 -9.20 16 14 C 0.04 0.83 4.81 -3.82 -0.02 0.81 16 15 C -0.12 -2.55 1.85 -90.62 -0.17 -2.71 16 16 H 0.06 1.25 5.74 -51.93 -0.30 0.95 16 17 C -0.15 -2.87 7.60 37.16 0.28 -2.58 16 18 C 0.03 0.85 4.36 -27.88 -0.12 0.73 16 19 C -0.52 -14.35 8.27 -34.44 -0.28 -14.64 16 20 H 0.05 1.46 7.12 -52.48 -0.37 1.08 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.75 4.92 -51.93 -0.26 0.50 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 38 H 0.05 0.74 4.59 -51.93 -0.24 0.51 16 39 H 0.08 1.53 5.46 -51.93 -0.28 1.25 16 40 H 0.08 1.53 7.78 -51.93 -0.40 1.12 16 41 H 0.04 0.78 7.86 -51.93 -0.41 0.37 16 42 H 0.07 1.44 6.73 -51.93 -0.35 1.09 16 43 H 0.04 0.72 3.68 -51.93 -0.19 0.53 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -31.43 340.56 -7.98 -39.41 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.61 Total: 0.14 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 0.46 Total: -11.11 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.28 Total: -35.42 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.66 Total: -14.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.43 -7.98 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.791 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds