Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34223 * 117.00033 * 2 1 4 4 O 1.20826 * 120.00223 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00060 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.53417 * 60.10274 * 5 3 2 7 7 C 1.53119 * 109.50093 * 299.99956 * 5 3 2 8 8 C 1.53113 * 109.15904 * 182.40311 * 7 5 3 9 9 C 1.53043 * 109.27711 * 57.65803 * 8 7 5 10 10 H 1.08991 * 109.46412 * 60.83687 * 9 8 7 11 11 C 1.52999 * 109.45070 * 180.81032 * 9 8 7 12 12 N 1.46845 * 109.51980 * 300.81576 * 9 8 7 13 13 C 1.46901 * 110.99910 * 185.83961 * 12 9 8 14 14 H 1.09001 * 109.47228 * 55.00029 * 13 12 9 15 15 C 1.53009 * 109.47052 * 295.00595 * 13 12 9 16 16 C 1.52999 * 109.47509 * 175.00570 * 13 12 9 17 17 C 1.53006 * 109.46623 * 294.99972 * 16 13 12 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00305 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46901 * 89.99815 * 22 20 18 24 24 H 1.48488 * 109.47487 * 210.00255 * 22 20 18 25 25 H 1.48503 * 109.47026 * 330.00635 * 22 20 18 26 26 C 1.46850 * 111.19737 * 61.74515 * 12 9 8 27 27 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46989 * 299.99567 * 1 2 3 29 29 H 1.09005 * 109.46999 * 59.99695 * 1 2 3 30 30 H 1.09001 * 109.52086 * 62.50016 * 7 5 3 31 31 H 1.09003 * 109.52182 * 302.31183 * 7 5 3 32 32 H 1.08996 * 109.50816 * 297.71779 * 8 7 5 33 33 H 1.09006 * 109.50206 * 177.59574 * 8 7 5 34 34 H 1.08999 * 109.46905 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.47567 * 300.04242 * 11 9 8 36 36 H 1.09002 * 109.47649 * 60.04667 * 11 9 8 37 37 H 1.09001 * 109.46642 * 299.99792 * 15 13 12 38 38 H 1.08998 * 109.46901 * 60.00027 * 15 13 12 39 39 H 1.08999 * 109.47112 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47486 * 175.00143 * 16 13 12 41 41 H 1.09001 * 109.47362 * 54.99421 * 16 13 12 42 42 H 1.08993 * 109.46955 * 300.00075 * 17 16 13 43 43 H 1.09000 * 109.47050 * 59.99904 * 17 16 13 44 44 H 0.97002 * 120.00008 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.46138 * 58.27256 * 26 12 9 46 46 H 1.08994 * 109.46267 * 178.23438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9568 0.7827 -0.8914 7 6 4.1151 0.5806 1.2490 8 6 5.6400 0.7175 1.2712 9 6 6.0146 2.2010 1.2395 10 1 5.6029 2.6984 2.1176 11 6 7.5381 2.3419 1.2412 12 7 5.4674 2.8194 0.0252 13 6 5.9232 4.2095 -0.1089 14 1 7.0123 4.2395 -0.0764 15 6 5.3555 5.0454 1.0401 16 6 5.4368 4.7793 -1.4429 17 6 6.1026 4.0222 -2.5938 18 6 5.6231 4.5830 -3.9078 19 1 4.9141 5.3977 -3.9207 20 6 6.0886 4.0555 -5.0935 21 7 5.6698 4.5446 -6.2402 22 14 7.3144 2.6461 -5.0712 23 1 6.5828 1.3538 -5.0713 24 1 8.1809 2.7244 -6.2745 25 1 8.1539 2.7394 -3.8498 26 6 4.0011 2.7421 0.0045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8444 -0.4750 1.2278 31 1 3.6944 1.0477 2.1396 32 1 6.0631 0.2167 0.4005 33 1 6.0330 0.2623 2.1804 34 1 7.8052 3.3984 1.2190 35 1 7.9445 1.8829 2.1424 36 1 7.9500 1.8449 0.3629 37 1 4.2664 5.0154 1.0076 38 1 5.7021 4.6395 1.9904 39 1 5.6933 6.0769 0.9403 40 1 5.6982 5.8358 -1.5037 41 1 4.3547 4.6681 -1.5127 42 1 7.1846 4.1334 -2.5240 43 1 5.8412 2.9658 -2.5330 44 1 5.9977 4.1737 -7.0744 45 1 3.5988 3.2370 0.8884 46 1 3.6240 3.2358 -0.8911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -98.066604 kcal Electronic energy + Delta-G solvation = -24075.389765 eV Core-core repulsion = 20771.584501 eV Total energy + Delta-G solvation = -3303.805264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.79530 -39.40334 -36.53221 -35.44730 -33.23162 -32.53516 -30.74183 -29.17858 -28.40054 -27.00541 -25.37111 -24.27948 -22.74642 -21.34199 -20.46214 -20.00446 -18.79113 -17.45764 -16.94968 -16.52706 -16.46282 -15.66557 -14.90997 -14.49466 -14.31979 -14.16254 -13.95258 -13.57368 -13.35087 -12.90298 -12.65026 -12.55941 -12.37963 -12.28296 -12.23099 -11.91577 -11.81934 -11.60179 -11.41444 -11.22327 -10.93996 -10.87641 -10.84359 -10.69701 -10.34160 -10.15859 -10.06573 -9.84605 -9.51494 -9.40497 -8.98718 -8.41688 -7.91153 -5.92849 -3.89051 2.21419 2.63592 3.40176 3.46522 3.52998 4.09332 4.53609 4.56685 4.68579 4.78207 4.98827 5.00041 5.05846 5.07340 5.30937 5.34825 5.39804 5.41647 5.43000 5.47145 5.53521 5.57702 5.67801 5.71067 5.82395 5.86401 5.95347 5.99697 6.09718 6.15629 6.25502 6.27086 6.28472 6.34203 6.44265 6.58642 6.76335 7.09781 7.38586 7.44036 7.55712 7.70707 7.74673 7.95232 8.67406 9.13566 9.71175 11.21040 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.005895 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.530556 B = 4748.451966 C = 5683.821038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.504 6.504 5 C -0.078 4.078 6 H 0.121 0.879 7 C -0.109 4.109 8 C -0.110 4.110 9 C 0.076 3.924 10 H 0.039 0.961 11 C -0.148 4.148 12 N -0.517 5.517 13 C 0.077 3.923 14 H 0.087 0.913 15 C -0.186 4.186 16 C -0.098 4.098 17 C -0.005 4.005 18 C -0.517 4.517 19 H 0.068 0.932 20 C 0.064 3.936 21 N -0.909 5.909 22 Si 0.881 3.119 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.264 1.264 26 C 0.068 3.932 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.010 0.990 43 H 0.024 0.976 44 H 0.260 0.740 45 H 0.041 0.959 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -9.948 18.900 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.098 4.098 6 H 0.138 0.862 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.033 4.033 10 H 0.057 0.943 11 C -0.206 4.206 12 N -0.242 5.242 13 C -0.030 4.030 14 H 0.104 0.896 15 C -0.245 4.245 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.555 4.555 19 H 0.086 0.914 20 C -0.136 4.136 21 N -0.549 5.549 22 Si 0.709 3.291 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.188 1.188 26 C -0.060 4.060 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.333 -9.930 18.309 21.093 hybrid contribution -0.035 -0.188 0.456 0.494 sum -3.368 -10.118 18.765 21.583 Atomic orbital electron populations 1.23245 0.76643 1.03475 1.02567 1.86506 1.23197 1.33683 1.84231 1.23832 0.92025 0.81209 0.71928 1.90675 1.67195 1.36307 1.44881 1.21119 0.86122 0.99990 1.02531 0.86151 1.21553 0.96595 1.00785 0.95705 1.21635 0.94440 0.96052 1.02628 1.21648 0.95470 0.94586 0.91581 0.94281 1.21914 0.94449 1.02273 1.01930 1.62032 1.07659 1.17984 1.36486 1.21967 1.00149 0.85325 0.95581 0.89551 1.22497 1.01756 1.01129 0.99134 1.21614 1.00309 0.99086 0.92592 1.19463 0.95294 0.96328 0.93148 1.21261 1.26253 1.18667 0.89307 0.91430 1.25024 0.96297 0.96794 0.95498 1.69935 1.44912 1.42701 0.97356 0.86752 0.81905 0.83058 0.77411 1.20435 1.21836 1.18844 1.21939 0.88378 0.92648 1.03017 0.88252 0.92105 0.91764 0.90536 0.91995 0.90438 0.91258 0.92178 0.92698 0.91480 0.92486 0.93302 0.92123 0.92561 0.92611 0.97190 0.95723 0.92994 0.94116 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.48 10.49 -39.24 -0.41 -4.90 16 3 C 0.47 6.72 7.26 36.01 0.26 6.98 16 4 O -0.50 -8.61 15.73 -18.75 -0.29 -8.91 16 5 C -0.08 -1.05 2.79 -91.69 -0.26 -1.30 16 6 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 7 C -0.11 -1.15 5.21 -26.61 -0.14 -1.29 16 8 C -0.11 -1.15 5.37 -26.65 -0.14 -1.29 16 9 C 0.08 0.92 2.00 -67.72 -0.14 0.78 16 10 H 0.04 0.47 6.73 -51.93 -0.35 0.12 16 11 C -0.15 -1.69 8.78 37.16 0.33 -1.36 16 12 N -0.52 -7.82 3.93 -218.76 -0.86 -8.68 16 13 C 0.08 1.23 1.96 -67.71 -0.13 1.10 16 14 H 0.09 1.37 5.92 -51.93 -0.31 1.06 16 15 C -0.19 -2.54 8.50 37.16 0.32 -2.23 16 16 C -0.10 -1.96 4.44 -26.73 -0.12 -2.08 16 17 C 0.00 -0.12 3.93 -27.88 -0.11 -0.23 16 18 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 19 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 20 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 22 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 26 C 0.07 1.04 3.22 -3.84 -0.01 1.03 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.70 6.22 -51.93 -0.32 0.38 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 38 H 0.05 0.59 6.65 -51.93 -0.35 0.25 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.15 6.05 -51.93 -0.31 0.84 16 42 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16 43 H 0.02 0.60 7.18 -51.93 -0.37 0.23 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 46 H 0.10 1.78 5.91 -51.93 -0.31 1.47 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -32.92 350.41 -7.72 -40.64 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.03 Total: -1.04 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.49 Total: -12.11 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.09 Total: -36.72 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.71 Total: -13.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.92 -7.72 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.425 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds