Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34222 * 117.00531 * 2 1 4 4 O 1.20832 * 119.99989 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00485 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.53391 * 59.89924 * 5 3 2 7 7 C 1.53115 * 109.49829 * 299.80355 * 5 3 2 8 8 C 1.53127 * 109.15866 * 182.40188 * 7 5 3 9 9 C 1.53038 * 109.27558 * 57.65496 * 8 7 5 10 10 H 1.08997 * 109.46400 * 60.83629 * 9 8 7 11 11 C 1.53003 * 109.46021 * 180.80712 * 9 8 7 12 12 N 1.46846 * 109.52217 * 300.81941 * 9 8 7 13 13 C 1.46907 * 111.00054 * 185.84412 * 12 9 8 14 14 H 1.09001 * 109.46564 * 32.47799 * 13 12 9 15 15 C 1.52999 * 109.47043 * 152.47983 * 13 12 9 16 16 C 1.53000 * 109.46871 * 272.47881 * 13 12 9 17 17 C 1.53000 * 109.47188 * 65.37899 * 16 13 12 18 18 C 1.50700 * 109.47471 * 174.09443 * 17 16 13 19 19 H 1.08006 * 119.99340 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00384 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99621 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47178 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46978 * 300.00083 * 22 20 18 25 25 H 1.48502 * 109.46869 * 59.99974 * 22 20 18 26 26 C 1.46847 * 111.20116 * 61.74378 * 12 9 8 27 27 H 1.09001 * 109.47302 * 300.00541 * 1 2 3 28 28 H 1.09005 * 109.46797 * 59.99845 * 1 2 3 29 29 H 1.08992 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.52589 * 302.30300 * 7 5 3 31 31 H 1.08999 * 109.52919 * 62.49973 * 7 5 3 32 32 H 1.09003 * 109.50076 * 177.59479 * 8 7 5 33 33 H 1.08991 * 109.50248 * 297.71315 * 8 7 5 34 34 H 1.08999 * 109.47157 * 176.80802 * 11 9 8 35 35 H 1.09003 * 109.46833 * 296.80136 * 11 9 8 36 36 H 1.08999 * 109.47543 * 56.80169 * 11 9 8 37 37 H 1.09003 * 109.47036 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47232 * 299.99681 * 15 13 12 39 39 H 1.08994 * 109.47393 * 60.00116 * 15 13 12 40 40 H 1.09000 * 109.47109 * 305.37718 * 16 13 12 41 41 H 1.08996 * 109.46895 * 185.37525 * 16 13 12 42 42 H 1.08997 * 109.47376 * 54.09273 * 17 16 13 43 43 H 1.09003 * 109.47428 * 294.09616 * 17 16 13 44 44 H 0.96995 * 120.00222 * 359.97438 * 21 20 18 45 45 H 1.09007 * 109.45841 * 58.27292 * 26 12 9 46 46 H 1.08995 * 109.46667 * 178.23878 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9570 0.7795 -0.8896 7 6 4.1148 0.5848 1.2515 8 6 5.6398 0.7217 1.2735 9 6 6.0145 2.2051 1.2367 10 1 5.6026 2.7055 2.1130 11 6 7.5380 2.3462 1.2383 12 7 5.4675 2.8193 0.0202 13 6 5.9234 4.2089 -0.1186 14 1 6.9252 4.3060 0.2998 15 6 5.9501 4.5913 -1.5998 16 6 4.9654 5.1372 0.6306 17 6 5.0392 4.8436 2.1303 18 6 4.2076 5.8514 2.8811 19 1 3.6795 6.6244 2.3424 20 6 4.1208 5.7868 4.2556 21 7 4.7642 4.8458 4.9115 22 14 3.0904 7.0365 5.1863 23 1 3.1620 6.7514 6.6418 24 1 3.6119 8.4019 4.9236 25 1 1.6789 6.9499 4.7332 26 6 4.0012 2.7420 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.6941 1.0549 2.1403 31 1 3.8441 -0.4709 1.2339 32 1 6.0326 0.2696 2.1843 33 1 6.0629 0.2178 0.4047 34 1 7.8054 3.3996 1.1549 35 1 7.9393 1.9420 2.1677 36 1 7.9546 1.7976 0.3936 37 1 6.2888 5.6222 -1.7029 38 1 6.6326 3.9299 -2.1336 39 1 4.9484 4.4941 -2.0183 40 1 3.9477 4.9708 0.2774 41 1 5.2481 6.1741 0.4491 42 1 6.0753 4.9078 2.4626 43 1 4.6573 3.8412 2.3236 44 1 5.2995 4.1971 4.4283 45 1 3.5987 3.2400 0.8816 46 1 3.6243 3.2325 -0.8979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -95.905070 kcal Electronic energy + Delta-G solvation = -24480.612219 eV Core-core repulsion = 21176.900686 eV Total energy + Delta-G solvation = -3303.711533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.71501 -39.39106 -36.44196 -35.30062 -33.26834 -32.63651 -30.19290 -29.21812 -28.29267 -26.85533 -24.63931 -24.08510 -22.64449 -21.83681 -20.43030 -19.83474 -18.95512 -17.39910 -16.83999 -16.63895 -16.32721 -15.56834 -14.80948 -14.33373 -14.22968 -13.88834 -13.68275 -13.49413 -13.22164 -12.87075 -12.54531 -12.41680 -12.22143 -12.15496 -12.11817 -11.72594 -11.60715 -11.50569 -11.14526 -10.92612 -10.83814 -10.79047 -10.70759 -10.58098 -10.30599 -10.13533 -10.02685 -9.97166 -9.57197 -9.44564 -8.62819 -8.29968 -7.61687 -6.33738 -4.01790 2.31275 2.72665 3.44904 3.47028 3.65242 4.25945 4.56329 4.68848 4.85981 4.98472 5.05702 5.13807 5.18227 5.22852 5.41893 5.46269 5.48038 5.54403 5.68675 5.69731 5.73791 5.85180 5.90661 5.97958 6.05393 6.09010 6.12135 6.19863 6.25870 6.30218 6.36963 6.40589 6.45988 6.47243 6.57305 6.66773 6.77641 6.98320 7.42023 7.47301 7.53450 7.63277 7.84916 8.26274 8.49167 8.91558 9.68844 11.06445 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.006447 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.876571 B = 4342.073528 C = 5393.171982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.499 6.499 5 C -0.073 4.073 6 H 0.111 0.889 7 C -0.112 4.112 8 C -0.105 4.105 9 C 0.053 3.947 10 H 0.077 0.923 11 C -0.144 4.144 12 N -0.521 5.521 13 C 0.067 3.933 14 H 0.085 0.915 15 C -0.135 4.135 16 C -0.138 4.138 17 C 0.006 3.994 18 C -0.599 4.599 19 H 0.046 0.954 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 1.065 2.935 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.063 3.937 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.004 0.996 43 H 0.018 0.982 44 H 0.267 0.733 45 H 0.069 0.931 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 -11.035 -11.140 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.385 6.385 5 C -0.093 4.093 6 H 0.129 0.871 7 C -0.150 4.150 8 C -0.142 4.142 9 C -0.055 4.055 10 H 0.095 0.905 11 C -0.202 4.202 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.103 0.897 15 C -0.192 4.192 16 C -0.177 4.177 17 C -0.030 4.030 18 C -0.637 4.637 19 H 0.064 0.936 20 C -0.188 4.188 21 N -0.550 5.550 22 Si 0.894 3.106 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.065 4.065 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.054 -10.538 -10.020 14.580 hybrid contribution -0.188 0.138 -0.913 0.942 sum -1.242 -10.400 -10.934 15.141 Atomic orbital electron populations 1.23232 0.76759 1.03358 1.02598 1.86496 1.23116 1.33795 1.84383 1.23888 0.92119 0.81207 0.72174 1.90704 1.67129 1.36238 1.44440 1.21081 0.85979 1.00088 1.02105 0.87116 1.21574 0.96820 1.00455 0.96139 1.21585 0.94275 0.96284 1.02100 1.22093 0.95341 0.94525 0.93525 0.90545 1.21923 0.94805 1.02106 1.01319 1.62170 1.07595 1.17521 1.37300 1.22011 0.99802 0.86737 0.95541 0.89703 1.21748 1.01413 1.00129 0.95949 1.22247 0.98611 0.98571 0.98248 1.19480 0.96236 0.96827 0.90485 1.22089 1.32270 1.15301 0.94059 0.93573 1.25793 0.97901 0.99811 0.95320 1.70801 1.29440 1.15628 1.39120 0.83597 0.75754 0.75133 0.76155 1.20771 1.21476 1.21502 1.21997 0.88876 0.92213 1.03401 0.91856 0.92063 0.88316 0.91263 0.90767 0.91186 0.91297 0.91984 0.92494 0.92527 0.92868 0.92770 0.93207 0.92443 0.92860 0.97769 0.96469 0.92309 0.91326 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.86 10.50 -39.24 -0.41 -5.27 16 3 C 0.46 7.32 7.26 36.01 0.26 7.58 16 4 O -0.50 -9.51 15.73 -18.75 -0.30 -9.81 16 5 C -0.07 -1.06 2.79 -91.69 -0.26 -1.32 16 6 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 7 C -0.11 -1.56 5.22 -26.61 -0.14 -1.70 16 8 C -0.10 -1.41 5.37 -26.65 -0.14 -1.55 16 9 C 0.05 0.86 2.04 -67.72 -0.14 0.72 16 10 H 0.08 1.55 4.53 -51.93 -0.24 1.31 16 11 C -0.14 -2.09 9.01 37.16 0.33 -1.75 16 12 N -0.52 -8.45 4.32 -218.76 -0.95 -9.39 16 13 C 0.07 1.14 2.35 -67.71 -0.16 0.98 16 14 H 0.09 1.46 5.06 -51.93 -0.26 1.20 16 15 C -0.13 -1.95 9.39 37.16 0.35 -1.60 16 16 C -0.14 -2.91 4.10 -26.73 -0.11 -3.02 16 17 C 0.01 0.15 2.73 -27.88 -0.08 0.08 16 18 C -0.60 -17.42 9.11 -34.44 -0.31 -17.73 16 19 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 20 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 21 N -0.91 -28.06 13.65 55.43 0.76 -27.30 16 22 Si 1.07 26.06 29.90 -169.99 -5.08 20.98 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 C 0.06 1.09 2.56 -3.84 -0.01 1.08 16 27 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.96 5.66 -51.93 -0.29 0.66 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.73 7.27 -51.93 -0.38 0.35 16 40 H 0.06 1.26 6.07 -51.93 -0.32 0.94 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 43 H 0.02 0.46 4.02 -51.93 -0.21 0.25 16 44 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 45 H 0.07 1.46 5.09 -51.93 -0.26 1.20 16 46 H 0.08 1.33 6.97 -51.93 -0.36 0.97 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -32.29 346.84 -7.91 -40.20 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.73 Total: 1.84 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 0.57 Total: -16.47 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.19 Total: -36.70 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.71 Total: -15.08 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.29 -7.91 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.703 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds