Wall clock time and date at job start Tue Mar 31 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99817 * 2 1 4 4 H 1.08998 * 109.47352 * 22.21227 * 3 2 1 5 5 C 1.53006 * 109.46583 * 262.21669 * 3 2 1 6 6 N 1.46893 * 109.47349 * 60.70907 * 5 3 2 7 7 C 1.46896 * 111.00027 * 88.92374 * 6 5 3 8 8 C 1.53002 * 109.47370 * 184.79118 * 7 6 5 9 9 C 1.50696 * 115.54763 * 303.63483 * 8 7 6 10 10 H 1.08004 * 119.99523 * 144.69379 * 9 8 7 11 11 C 1.37875 * 120.00342 * 324.69300 * 9 8 7 12 12 N 1.31510 * 119.99669 * 347.72015 * 11 9 8 13 13 Si 1.86805 * 119.99991 * 167.72426 * 11 9 8 14 14 H 1.48498 * 109.47070 * 89.99878 * 13 11 9 15 15 H 1.48502 * 109.46779 * 210.00121 * 13 11 9 16 16 H 1.48496 * 109.46852 * 329.99508 * 13 11 9 17 17 C 1.53006 * 117.49862 * 157.96735 * 8 7 6 18 18 C 1.53002 * 117.49842 * 89.30895 * 8 7 6 19 19 C 1.53001 * 109.47159 * 142.21958 * 3 2 1 20 20 C 1.53180 * 109.54089 * 299.99654 * 19 3 2 21 21 C 1.53092 * 109.16060 * 176.84832 * 20 19 3 22 22 O 1.42904 * 109.41673 * 302.38948 * 21 20 19 23 23 C 1.42910 * 114.09918 * 61.15599 * 22 21 20 24 24 C 1.53087 * 109.41492 * 298.84878 * 23 22 21 25 25 H 1.09004 * 109.46773 * 306.13480 * 1 2 3 26 26 H 1.08991 * 109.46874 * 66.13775 * 1 2 3 27 27 H 1.08994 * 109.46896 * 186.13653 * 1 2 3 28 28 H 1.08994 * 109.46751 * 180.71413 * 5 3 2 29 29 H 1.09006 * 109.46970 * 300.70844 * 5 3 2 30 30 H 1.00895 * 111.00574 * 212.87665 * 6 5 3 31 31 H 1.09004 * 109.47498 * 304.79446 * 7 6 5 32 32 H 1.09006 * 109.47182 * 64.79077 * 7 6 5 33 33 H 0.97008 * 119.99514 * 185.03835 * 12 11 9 34 34 H 1.09003 * 117.49931 * 0.02562 * 17 8 7 35 35 H 1.08995 * 117.49538 * 145.02176 * 17 8 7 36 36 H 1.08995 * 117.49739 * 214.98001 * 18 8 7 37 37 H 1.09001 * 117.49987 * 359.97438 * 18 8 7 38 38 H 1.08995 * 109.54100 * 179.81577 * 19 3 2 39 39 H 1.08999 * 109.52182 * 56.94122 * 20 19 3 40 40 H 1.08997 * 109.57057 * 296.78076 * 20 19 3 41 41 H 1.08999 * 109.48158 * 182.40803 * 21 20 19 42 42 H 1.09005 * 109.48476 * 62.37129 * 21 20 19 43 43 H 1.09006 * 109.47454 * 58.82435 * 23 22 21 44 44 H 1.08994 * 109.47904 * 178.86001 * 23 22 21 45 45 H 1.09007 * 109.52368 * 297.69697 * 24 23 22 46 46 H 1.08996 * 109.57397 * 177.54424 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2889 2.0244 0.3885 5 6 2.3961 1.6918 -1.4293 6 7 1.1945 1.7062 -2.2741 7 6 0.5515 3.0268 -2.2525 8 6 -0.7565 2.9702 -3.0442 9 6 -0.6323 2.5052 -4.4722 10 1 -1.4158 1.9090 -4.9160 11 6 0.4816 2.8410 -5.2122 12 7 1.3151 3.7558 -4.7675 13 14 0.8067 1.9964 -6.8464 14 1 0.1561 2.7641 -7.9384 15 1 2.2705 1.9342 -7.0889 16 1 0.2520 0.6194 -6.8108 17 6 -1.8151 4.0312 -2.7362 18 6 -2.0266 2.5843 -2.2834 19 6 3.2592 1.3077 0.8837 20 6 2.8747 0.9210 2.3152 21 6 4.1404 0.8492 3.1735 22 8 5.0501 -0.0923 2.6006 23 6 5.4814 0.2424 1.2798 24 6 4.2696 0.2899 0.3455 25 1 -0.3633 0.6060 0.8300 26 1 -0.3633 0.4157 -0.9398 27 1 -0.3633 -1.0217 0.1099 28 1 2.8510 2.6823 -1.4276 29 1 3.1079 0.9658 -1.8223 30 1 1.4128 1.4257 -3.2183 31 1 0.3403 3.3114 -1.2217 32 1 1.2176 3.7626 -2.7033 33 1 2.0582 4.0447 -5.3203 34 1 -1.5795 4.7697 -1.9699 35 1 -2.4219 4.3924 -3.5665 36 1 -2.7725 1.9943 -2.8159 37 1 -1.9303 2.3702 -1.2190 38 1 3.7053 2.3022 0.8819 39 1 2.3824 -0.0514 2.3100 40 1 2.1978 1.6699 2.7264 41 1 3.8777 0.5328 4.1829 42 1 4.6104 1.8320 3.2112 43 1 5.9688 1.2173 1.2928 44 1 6.1846 -0.5111 0.9252 45 1 3.8054 -0.6953 0.3006 46 1 4.5898 0.5875 -0.6529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602644590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:28 Heat of formation + Delta-G solvation = -75.456498 kcal Electronic energy + Delta-G solvation = -23980.268073 eV Core-core repulsion = 20677.443257 eV Total energy + Delta-G solvation = -3302.824816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.66676 -37.79869 -36.70840 -34.20017 -33.38896 -32.16429 -31.11151 -28.60004 -26.05035 -25.50952 -25.10290 -23.57691 -23.03301 -21.16243 -20.61942 -19.71219 -19.01897 -16.49899 -16.39966 -16.03627 -15.81840 -15.02656 -14.86358 -14.75882 -14.42809 -14.31821 -13.86628 -13.66258 -13.50928 -12.91330 -12.63790 -12.49722 -12.13347 -11.86193 -11.59025 -11.39944 -11.24698 -11.10412 -11.02590 -10.91054 -10.82537 -10.57069 -10.43177 -10.20086 -10.19198 -9.95694 -9.55137 -9.28630 -9.17045 -8.98316 -8.69294 -8.11356 -7.20917 -6.03950 -4.11024 3.22428 3.31186 3.36769 3.85224 4.26397 4.32285 4.65382 4.78294 4.92795 4.97612 5.03420 5.18060 5.30213 5.39683 5.47670 5.56513 5.63829 5.68871 5.70844 5.76782 5.86039 5.96358 5.97201 6.07026 6.11213 6.14196 6.20426 6.24117 6.40530 6.44917 6.52714 6.58369 6.67773 6.76563 6.84873 6.96731 7.16201 7.19111 7.36318 7.54593 7.74720 7.93294 8.23247 8.43458 8.54092 8.86997 9.46482 10.90650 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.004603 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.683137 B = 6081.421604 C = 6771.696004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.375 6.375 3 C 0.107 3.893 4 H 0.055 0.945 5 C 0.040 3.960 6 N -0.672 5.672 7 C 0.098 3.902 8 C 0.062 3.938 9 C -0.476 4.476 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.271 1.271 17 C -0.208 4.208 18 C -0.204 4.204 19 C -0.088 4.088 20 C -0.148 4.148 21 C 0.062 3.938 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.146 4.146 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.352 0.648 31 H 0.020 0.980 32 H 0.078 0.922 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -3.870 12.100 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.294 6.294 3 C 0.048 3.952 4 H 0.073 0.927 5 C -0.091 4.091 6 N -0.303 5.303 7 C -0.031 4.031 8 C 0.061 3.939 9 C -0.514 4.514 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.522 5.522 13 Si 0.715 3.285 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.247 4.247 18 C -0.241 4.241 19 C -0.107 4.107 20 C -0.186 4.186 21 C -0.015 4.015 22 O -0.305 6.305 23 C -0.016 4.016 24 C -0.184 4.184 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.172 0.828 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.699 -4.419 12.638 14.551 hybrid contribution 0.300 0.818 -1.610 1.831 sum 6.000 -3.601 11.028 13.061 Atomic orbital electron populations 1.22829 0.81072 1.00768 1.01571 1.87738 1.19764 1.26851 1.95041 1.22042 0.93316 0.85282 0.94540 0.92722 1.22369 0.93442 0.99097 0.94192 1.60283 1.24308 1.29309 1.16383 1.21556 0.96448 0.90320 0.94728 1.18906 0.85815 0.95337 0.93841 1.20543 1.03710 1.32057 0.95097 0.92309 1.24962 0.95788 0.94774 0.97877 1.69886 1.16767 1.28655 1.36872 0.86642 0.77451 0.80530 0.83860 1.20775 1.21129 1.19558 1.22952 1.08789 0.91025 1.01919 1.22812 1.04843 0.98103 0.98341 1.21356 0.95794 0.99025 0.94538 1.22175 0.97981 1.03284 0.95117 1.22558 0.89557 0.92584 0.96755 1.87902 1.63330 1.49189 1.30063 1.22618 0.96007 1.00376 0.82641 1.22187 0.95889 1.01235 0.99082 0.95916 0.90627 0.91440 0.94672 0.91923 0.82835 0.96125 0.90417 0.92958 0.92073 0.90667 0.91067 0.91687 0.90679 0.90119 0.91437 0.89243 0.93575 0.93581 0.89144 0.89942 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.68 101.05 1.08 1.62 16 2 O -0.38 -6.21 8.81 -35.23 -0.31 -6.52 16 3 C 0.11 1.66 2.17 -26.73 -0.06 1.60 16 4 H 0.05 0.90 7.13 -51.93 -0.37 0.53 16 5 C 0.04 0.70 5.27 -3.82 -0.02 0.68 16 6 N -0.67 -13.87 4.88 -113.78 -0.56 -14.42 16 7 C 0.10 2.20 4.67 -3.82 -0.02 2.18 16 8 C 0.06 1.48 2.06 -155.66 -0.32 1.16 16 9 C -0.48 -12.42 8.46 -34.44 -0.29 -12.71 16 10 H 0.06 1.56 7.84 -52.48 -0.41 1.15 16 11 C 0.07 1.74 4.35 -17.82 -0.08 1.66 16 12 N -0.88 -23.15 10.79 55.43 0.60 -22.55 16 13 Si 0.89 20.18 29.56 -169.99 -5.02 15.16 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C -0.21 -4.70 9.96 -26.69 -0.27 -4.96 16 18 C -0.20 -4.39 9.93 -26.69 -0.27 -4.66 16 19 C -0.09 -1.13 2.17 -90.43 -0.20 -1.33 16 20 C -0.15 -1.73 5.32 -26.59 -0.14 -1.87 16 21 C 0.06 0.66 6.84 37.20 0.25 0.92 16 22 O -0.39 -4.90 10.77 -35.23 -0.38 -5.28 16 23 C 0.06 0.67 6.84 37.20 0.25 0.93 16 24 C -0.15 -1.83 4.87 -26.59 -0.13 -1.96 16 25 H 0.02 0.33 7.96 -51.93 -0.41 -0.09 16 26 H 0.08 1.38 6.89 -51.93 -0.36 1.03 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 29 H 0.06 1.06 6.56 -51.93 -0.34 0.72 16 30 H 0.35 8.06 7.36 -39.29 -0.29 7.77 16 31 H 0.02 0.44 7.59 -51.93 -0.39 0.05 16 32 H 0.08 1.95 5.91 -51.93 -0.31 1.64 16 33 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.06 7.60 -51.93 -0.39 0.67 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.17 7.59 -51.92 -0.39 0.77 16 46 H 0.07 0.92 6.64 -51.93 -0.34 0.57 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -26.47 354.46 -8.73 -35.20 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.21 Total: 9.82 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.20 Total: -16.75 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.04 Total: -36.97 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.69 Total: -11.80 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.47 -8.73 -35.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602644590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.256 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds