Wall clock time and date at job start Tue Mar 31 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99817 * 2 1 4 4 H 1.08998 * 109.47352 * 22.21227 * 3 2 1 5 5 C 1.53006 * 109.46583 * 262.21669 * 3 2 1 6 6 N 1.46893 * 109.47349 * 60.70907 * 5 3 2 7 7 C 1.46896 * 111.00027 * 88.92374 * 6 5 3 8 8 C 1.53002 * 109.47370 * 184.79118 * 7 6 5 9 9 C 1.50696 * 115.54763 * 303.63483 * 8 7 6 10 10 H 1.08004 * 119.99523 * 144.69379 * 9 8 7 11 11 C 1.37875 * 120.00342 * 324.69300 * 9 8 7 12 12 N 1.31510 * 119.99669 * 347.72015 * 11 9 8 13 13 Si 1.86805 * 119.99991 * 167.72426 * 11 9 8 14 14 H 1.48498 * 109.47070 * 89.99878 * 13 11 9 15 15 H 1.48502 * 109.46779 * 210.00121 * 13 11 9 16 16 H 1.48496 * 109.46852 * 329.99508 * 13 11 9 17 17 C 1.53006 * 117.49862 * 157.96735 * 8 7 6 18 18 C 1.53002 * 117.49842 * 89.30895 * 8 7 6 19 19 C 1.53001 * 109.47159 * 142.21958 * 3 2 1 20 20 C 1.53180 * 109.54089 * 299.99654 * 19 3 2 21 21 C 1.53092 * 109.16060 * 176.84832 * 20 19 3 22 22 O 1.42904 * 109.41673 * 302.38948 * 21 20 19 23 23 C 1.42910 * 114.09918 * 61.15599 * 22 21 20 24 24 C 1.53087 * 109.41492 * 298.84878 * 23 22 21 25 25 H 1.09004 * 109.46773 * 306.13480 * 1 2 3 26 26 H 1.08991 * 109.46874 * 66.13775 * 1 2 3 27 27 H 1.08994 * 109.46896 * 186.13653 * 1 2 3 28 28 H 1.08994 * 109.46751 * 180.71413 * 5 3 2 29 29 H 1.09006 * 109.46970 * 300.70844 * 5 3 2 30 30 H 1.00895 * 111.00574 * 212.87665 * 6 5 3 31 31 H 1.09004 * 109.47498 * 304.79446 * 7 6 5 32 32 H 1.09006 * 109.47182 * 64.79077 * 7 6 5 33 33 H 0.97008 * 119.99514 * 185.03835 * 12 11 9 34 34 H 1.09003 * 117.49931 * 0.02562 * 17 8 7 35 35 H 1.08995 * 117.49538 * 145.02176 * 17 8 7 36 36 H 1.08995 * 117.49739 * 214.98001 * 18 8 7 37 37 H 1.09001 * 117.49987 * 359.97438 * 18 8 7 38 38 H 1.08995 * 109.54100 * 179.81577 * 19 3 2 39 39 H 1.08999 * 109.52182 * 56.94122 * 20 19 3 40 40 H 1.08997 * 109.57057 * 296.78076 * 20 19 3 41 41 H 1.08999 * 109.48158 * 182.40803 * 21 20 19 42 42 H 1.09005 * 109.48476 * 62.37129 * 21 20 19 43 43 H 1.09006 * 109.47454 * 58.82435 * 23 22 21 44 44 H 1.08994 * 109.47904 * 178.86001 * 23 22 21 45 45 H 1.09007 * 109.52368 * 297.69697 * 24 23 22 46 46 H 1.08996 * 109.57397 * 177.54424 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2889 2.0244 0.3885 5 6 2.3961 1.6918 -1.4293 6 7 1.1945 1.7062 -2.2741 7 6 0.5515 3.0268 -2.2525 8 6 -0.7565 2.9702 -3.0442 9 6 -0.6323 2.5052 -4.4722 10 1 -1.4158 1.9090 -4.9160 11 6 0.4816 2.8410 -5.2122 12 7 1.3151 3.7558 -4.7675 13 14 0.8067 1.9964 -6.8464 14 1 0.1561 2.7641 -7.9384 15 1 2.2705 1.9342 -7.0889 16 1 0.2520 0.6194 -6.8108 17 6 -1.8151 4.0312 -2.7362 18 6 -2.0266 2.5843 -2.2834 19 6 3.2592 1.3077 0.8837 20 6 2.8747 0.9210 2.3152 21 6 4.1404 0.8492 3.1735 22 8 5.0501 -0.0923 2.6006 23 6 5.4814 0.2424 1.2798 24 6 4.2696 0.2899 0.3455 25 1 -0.3633 0.6060 0.8300 26 1 -0.3633 0.4157 -0.9398 27 1 -0.3633 -1.0217 0.1099 28 1 2.8510 2.6823 -1.4276 29 1 3.1079 0.9658 -1.8223 30 1 1.4128 1.4257 -3.2183 31 1 0.3403 3.3114 -1.2217 32 1 1.2176 3.7626 -2.7033 33 1 2.0582 4.0447 -5.3203 34 1 -1.5795 4.7697 -1.9699 35 1 -2.4219 4.3924 -3.5665 36 1 -2.7725 1.9943 -2.8159 37 1 -1.9303 2.3702 -1.2190 38 1 3.7053 2.3022 0.8819 39 1 2.3824 -0.0514 2.3100 40 1 2.1978 1.6699 2.7264 41 1 3.8777 0.5328 4.1829 42 1 4.6104 1.8320 3.2112 43 1 5.9688 1.2173 1.2928 44 1 6.1846 -0.5111 0.9252 45 1 3.8054 -0.6953 0.3006 46 1 4.5898 0.5875 -0.6529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602644590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:27 Heat of formation + Delta-G solvation = -90.462735 kcal Electronic energy + Delta-G solvation = -23980.918792 eV Core-core repulsion = 20677.443257 eV Total energy + Delta-G solvation = -3303.475536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70597 -39.12679 -38.32846 -35.57030 -34.69100 -34.10924 -32.00939 -29.89941 -27.74633 -27.06916 -26.50464 -24.63950 -24.21858 -22.90252 -21.91402 -20.89715 -20.76920 -18.24538 -17.43041 -17.35467 -16.87768 -16.65534 -16.20935 -15.94971 -15.89709 -15.57523 -15.48082 -14.80246 -14.64465 -14.44577 -14.29873 -13.93808 -13.34932 -13.22132 -12.95644 -12.88610 -12.77993 -12.63089 -12.56537 -12.24644 -12.15926 -12.01716 -11.97712 -11.75382 -11.25273 -11.14238 -11.07941 -11.02160 -10.60467 -10.53003 -10.28583 -9.96419 -8.87608 -7.98331 -6.12839 1.39666 1.45274 1.54113 2.42384 3.00281 3.01968 3.04760 3.42408 3.71208 3.77932 3.94958 4.06291 4.14000 4.25326 4.35163 4.38760 4.45679 4.54841 4.58541 4.62623 4.67173 4.70420 4.76937 4.81822 4.82717 4.85862 4.88451 4.97383 4.99822 5.06645 5.11341 5.16474 5.19575 5.26592 5.28651 5.38836 5.50739 5.57294 5.61919 5.99257 6.31210 6.44163 6.47673 6.59864 6.73050 6.91944 7.46551 8.92603 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.004603 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.683137 B = 6081.421604 C = 6771.696004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.384 6.384 3 C 0.114 3.886 4 H 0.048 0.952 5 C 0.041 3.959 6 N -0.669 5.669 7 C 0.115 3.885 8 C 0.033 3.967 9 C -0.495 4.495 10 H 0.045 0.955 11 C 0.037 3.963 12 N -0.899 5.899 13 Si 0.941 3.059 14 H -0.283 1.283 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.209 4.209 18 C -0.183 4.183 19 C -0.086 4.086 20 C -0.142 4.142 21 C 0.061 3.939 22 O -0.404 6.404 23 C 0.061 3.939 24 C -0.142 4.142 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.336 0.664 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -4.103 13.320 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.303 6.303 3 C 0.055 3.945 4 H 0.066 0.934 5 C -0.090 4.090 6 N -0.299 5.299 7 C -0.014 4.014 8 C 0.032 3.968 9 C -0.533 4.533 10 H 0.063 0.937 11 C -0.163 4.163 12 N -0.538 5.538 13 Si 0.767 3.233 14 H -0.209 1.209 15 H -0.208 1.208 16 H -0.196 1.196 17 C -0.248 4.248 18 C -0.220 4.220 19 C -0.105 4.105 20 C -0.180 4.180 21 C -0.016 4.016 22 O -0.323 6.323 23 C -0.015 4.015 24 C -0.180 4.180 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.288 -4.652 13.875 15.928 hybrid contribution 0.082 0.895 -1.989 2.182 sum 6.370 -3.757 11.886 13.999 Atomic orbital electron populations 1.22809 0.80721 1.01882 1.00617 1.87743 1.20216 1.27375 1.94963 1.22001 0.94297 0.84716 0.93472 0.93417 1.22466 0.92436 0.99048 0.95018 1.60325 1.25734 1.28211 1.15605 1.21275 0.95366 0.90349 0.94432 1.19058 0.87257 0.96865 0.93582 1.20688 1.03810 1.32344 0.96466 0.93714 1.25438 0.95526 0.95023 1.00295 1.69999 1.16894 1.29252 1.37637 0.85822 0.77237 0.79467 0.80761 1.20882 1.20759 1.19641 1.22945 1.08027 0.91742 1.02040 1.22773 1.03098 0.97161 0.99010 1.21357 0.94554 0.99759 0.94808 1.22123 0.98771 1.02647 0.94484 1.22691 0.88690 0.93101 0.97077 1.87885 1.63720 1.50177 1.30546 1.22679 0.95423 1.01593 0.81821 1.22124 0.96391 0.99964 0.99520 0.94654 0.93236 0.89851 0.95021 0.91581 0.84591 0.95301 0.93183 0.93047 0.90788 0.91585 0.91169 0.89898 0.89639 0.91720 0.90353 0.87655 0.92153 0.92192 0.88024 0.91867 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 10.68 113.37 1.21 2.31 16 2 O -0.38 -12.37 8.81 -148.98 -1.31 -13.68 16 3 C 0.11 3.42 2.17 30.60 0.07 3.48 16 4 H 0.05 1.50 7.13 -2.39 -0.02 1.48 16 5 C 0.04 1.41 5.27 86.31 0.45 1.86 16 6 N -0.67 -27.68 4.88 -513.89 -2.51 -30.19 16 7 C 0.11 5.15 4.67 86.30 0.40 5.55 16 8 C 0.03 1.58 2.06 -52.93 -0.11 1.47 16 9 C -0.50 -26.05 8.46 25.60 0.22 -25.83 16 10 H 0.04 2.41 7.84 -2.91 -0.02 2.39 16 11 C 0.04 1.93 4.35 84.65 0.37 2.29 16 12 N -0.90 -47.40 10.79 21.45 0.23 -47.17 16 13 Si 0.94 41.62 29.56 68.60 2.03 43.65 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C -0.21 -9.30 9.96 30.62 0.30 -8.99 16 18 C -0.18 -7.72 9.93 30.62 0.30 -7.42 16 19 C -0.09 -2.07 2.17 -10.67 -0.02 -2.09 16 20 C -0.14 -3.05 5.32 30.69 0.16 -2.89 16 21 C 0.06 1.14 6.84 72.01 0.49 1.63 16 22 O -0.40 -9.40 10.77 -148.98 -1.60 -11.00 16 23 C 0.06 1.24 6.84 72.01 0.49 1.74 16 24 C -0.14 -3.38 4.87 30.68 0.15 -3.23 16 25 H 0.03 0.97 7.96 -2.39 -0.02 0.95 16 26 H 0.05 1.77 6.89 -2.39 -0.02 1.76 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 1.12 7.80 -2.39 -0.02 1.10 16 29 H 0.07 2.23 6.56 -2.38 -0.02 2.21 16 30 H 0.34 15.61 7.36 -89.70 -0.66 14.95 16 31 H 0.03 1.22 7.59 -2.39 -0.02 1.20 16 32 H 0.05 2.54 5.91 -2.38 -0.01 2.53 16 33 H 0.26 13.22 8.32 -92.70 -0.77 12.45 16 34 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.08 3.17 8.14 -2.39 -0.02 3.16 16 38 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.61 7.60 -2.39 -0.02 1.59 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.75 7.59 -2.38 -0.02 1.73 16 46 H 0.07 1.73 6.64 -2.39 -0.02 1.71 16 Total: -1.00 -55.56 354.46 1.61 -53.95 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.28 Total: 34.56 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 4.49 Total: -30.11 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.28 Total: -77.36 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -2.92 Total: -24.68 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -55.56 1.61 -53.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602644590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -55.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds