Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.46839 * 2 1 4 4 C 1.34225 * 116.99890 * 180.02562 * 3 2 1 5 5 O 1.20836 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50692 * 120.00104 * 179.97438 * 4 3 2 7 7 C 1.53009 * 109.47208 * 163.06876 * 6 4 3 8 8 H 1.08991 * 109.90739 * 50.58230 * 7 6 4 9 9 C 1.53990 * 109.91664 * 171.68731 * 7 6 4 10 10 C 1.54594 * 105.14273 * 120.57880 * 9 7 6 11 11 C 1.54928 * 102.92055 * 21.95141 * 10 9 7 12 12 N 1.47910 * 109.91518 * 289.27267 * 7 6 4 13 13 C 1.46892 * 110.99639 * 94.80523 * 12 7 6 14 14 C 1.52999 * 109.47238 * 173.73855 * 13 12 7 15 15 H 1.09000 * 109.47140 * 43.02584 * 14 13 12 16 16 C 1.53002 * 109.47165 * 283.03181 * 14 13 12 17 17 C 1.52992 * 109.47796 * 163.02900 * 14 13 12 18 18 C 1.50697 * 109.47681 * 185.00021 * 17 14 13 19 19 H 1.08004 * 119.99739 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00519 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99528 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00434 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47386 * 89.99803 * 22 20 18 24 24 H 1.48505 * 109.47383 * 209.99825 * 22 20 18 25 25 H 1.48499 * 109.47074 * 329.99743 * 22 20 18 26 26 H 1.08993 * 109.47398 * 300.00071 * 1 2 3 27 27 H 1.09001 * 109.47353 * 60.00185 * 1 2 3 28 28 H 1.08998 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47267 * 240.00183 * 2 1 3 30 30 H 1.08997 * 109.46861 * 119.99854 * 2 1 3 31 31 H 1.08998 * 109.47641 * 283.06635 * 6 4 3 32 32 H 1.09003 * 109.47030 * 43.07296 * 6 4 3 33 33 H 1.09003 * 110.30560 * 239.49400 * 9 7 6 34 34 H 1.09006 * 110.31244 * 1.55668 * 9 7 6 35 35 H 1.08994 * 110.72556 * 140.31711 * 10 9 7 36 36 H 1.09013 * 110.72184 * 263.59612 * 10 9 7 37 37 H 1.08998 * 110.66833 * 81.02609 * 11 10 9 38 38 H 1.09010 * 110.66796 * 203.98237 * 11 10 9 39 39 H 1.09002 * 109.47363 * 293.73295 * 13 12 7 40 40 H 1.08994 * 109.47939 * 53.73544 * 13 12 7 41 41 H 1.09000 * 109.47336 * 78.68400 * 16 14 13 42 42 H 1.08995 * 109.47231 * 198.68965 * 16 14 13 43 43 H 1.09006 * 109.46540 * 318.69237 * 16 14 13 44 44 H 1.09008 * 109.47040 * 305.00247 * 17 14 13 45 45 H 1.09000 * 109.47284 * 64.99702 * 17 14 13 46 46 H 0.97004 * 119.99612 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.3909 2.8815 0.4184 8 1 5.9176 2.1333 -0.1738 9 6 6.0453 4.2616 0.2225 10 6 6.5465 4.6737 1.6257 11 6 6.6606 3.3171 2.3651 12 7 5.4922 2.5537 1.8572 13 6 5.6793 1.1104 2.0563 14 6 5.9353 0.8289 3.5382 15 1 5.2497 1.4212 4.1443 16 6 7.3773 1.2031 3.8868 17 6 5.7116 -0.6579 3.8212 18 6 5.8433 -0.9132 5.3005 19 1 6.0649 -0.0966 5.9718 20 6 5.6821 -2.1893 5.7970 21 7 5.4128 -3.1837 4.9794 22 14 5.8447 -2.5057 7.6308 23 1 4.5173 -2.3532 8.2790 24 1 6.3482 -3.8850 7.8525 25 1 6.7977 -1.5304 8.2187 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8444 3.3618 -1.0023 32 1 3.3660 3.5603 0.7007 33 1 6.8824 4.1882 -0.4717 34 1 5.3118 4.9794 -0.1449 35 1 7.5195 5.1605 1.5601 36 1 5.8221 5.3221 2.1189 37 1 7.5917 2.8139 2.1043 38 1 6.5910 3.4596 3.4436 39 1 4.7827 0.5800 1.7354 40 1 6.5323 0.7701 1.4693 41 1 7.4533 2.2837 4.0077 42 1 7.6655 0.7123 4.8163 43 1 8.0406 0.8798 3.0844 44 1 4.7133 -0.9445 3.4905 45 1 6.4552 -1.2460 3.2834 46 1 5.2989 -4.0815 5.3287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119236988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = -94.780592 kcal Electronic energy + Delta-G solvation = -23665.756332 eV Core-core repulsion = 20362.093560 eV Total energy + Delta-G solvation = -3303.662772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54517 -39.00894 -36.44060 -35.34861 -32.56456 -32.03766 -31.27162 -30.46622 -27.33731 -26.43731 -25.28451 -23.20542 -22.56429 -21.21471 -20.86948 -19.73179 -18.90739 -17.57878 -16.69766 -16.38475 -16.24071 -15.50738 -15.15401 -14.82758 -14.39678 -13.71950 -13.64166 -13.25755 -12.97544 -12.88498 -12.77287 -12.49734 -12.23361 -11.99359 -11.81639 -11.68045 -11.60671 -11.52477 -11.25620 -11.00728 -10.96709 -10.75670 -10.55354 -10.53057 -10.37155 -10.26863 -9.98734 -9.71010 -9.56737 -9.02685 -8.85053 -8.26516 -8.08364 -5.91144 -3.92164 2.40480 2.81219 3.36281 3.42206 3.45561 4.19006 4.52069 4.60439 4.68318 4.93146 4.96851 4.99737 5.05309 5.16851 5.31078 5.33568 5.44034 5.46149 5.59692 5.65865 5.74287 5.79481 5.82497 5.86293 5.91134 5.94205 5.95700 6.03425 6.10564 6.25041 6.31662 6.46358 6.58636 6.62499 6.76656 7.02127 7.24138 7.26488 7.33933 7.54022 7.79587 7.96650 7.97769 8.10578 8.53762 9.14440 9.70446 11.20315 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.005347 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.117285 B = 5235.466894 C = 7130.433415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.458 3.542 5 O -0.494 6.494 6 C -0.096 4.096 7 C 0.068 3.932 8 H 0.065 0.935 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.034 3.966 12 N -0.513 5.513 13 C 0.047 3.953 14 C -0.085 4.085 15 H 0.063 0.937 16 C -0.151 4.151 17 C 0.032 3.968 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.896 5.896 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 14.700 -12.636 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.302 3.698 5 O -0.381 6.381 6 C -0.134 4.134 7 C -0.041 4.041 8 H 0.083 0.917 9 C -0.162 4.162 10 C -0.166 4.166 11 C -0.093 4.093 12 N -0.237 5.237 13 C -0.079 4.079 14 C -0.104 4.104 15 H 0.081 0.919 16 C -0.208 4.208 17 C -0.006 4.006 18 C -0.549 4.549 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.537 14.309 -12.366 19.449 hybrid contribution 0.811 -0.894 0.569 1.334 sum -3.726 13.416 -11.796 18.249 Atomic orbital electron populations 1.21787 0.92874 1.02904 1.03181 1.23025 0.95141 0.80249 1.02979 1.86465 1.24881 1.32443 1.84249 1.23719 0.80463 0.93023 0.72642 1.90668 1.60105 1.43375 1.43934 1.21466 0.96668 0.91243 1.04036 1.22244 0.93192 0.97098 0.91533 0.91685 1.22417 1.00126 0.95699 0.97939 1.22562 1.00937 0.97823 0.95247 1.23589 0.92733 0.92573 1.00439 1.64809 1.38787 1.08850 1.11264 1.22846 1.01523 0.85835 0.97745 1.21230 0.95888 1.00514 0.92718 0.91904 1.22280 0.97010 0.99634 1.01868 1.19064 0.96727 0.88526 0.96255 1.21250 1.47383 0.93357 0.92922 0.92635 1.25025 0.95628 0.96411 0.97513 1.69988 1.49277 1.00073 1.34283 0.86645 0.78246 0.77371 0.86030 1.20762 1.21354 1.19940 0.91418 0.91878 0.90307 0.91488 0.90598 0.87793 0.87344 0.91416 0.90932 0.91417 0.90891 0.93401 0.89131 0.89089 0.95521 0.93563 0.91611 0.94581 0.96855 0.96860 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.12 10.22 -39.24 -0.40 -5.52 16 4 C 0.46 6.85 7.33 36.00 0.26 7.12 16 5 O -0.49 -9.02 12.26 -18.76 -0.23 -9.25 16 6 C -0.10 -1.10 5.25 -27.88 -0.15 -1.25 16 7 C 0.07 0.89 2.42 -66.64 -0.16 0.73 16 8 H 0.07 0.96 7.08 -51.93 -0.37 0.59 16 9 C -0.12 -1.22 6.56 -25.38 -0.17 -1.39 16 10 C -0.13 -1.34 7.06 -24.88 -0.18 -1.52 16 11 C 0.03 0.47 4.42 -1.91 -0.01 0.47 16 12 N -0.51 -8.15 4.95 -222.58 -1.10 -9.25 16 13 C 0.05 0.94 3.82 -3.83 -0.01 0.92 16 14 C -0.08 -1.86 2.16 -90.62 -0.20 -2.06 16 15 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.15 -2.99 7.79 37.16 0.29 -2.70 16 17 C 0.03 0.87 4.41 -27.89 -0.12 0.75 16 18 C -0.51 -14.82 8.14 -34.44 -0.28 -15.10 16 19 H 0.06 1.56 7.23 -52.48 -0.38 1.19 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.58 7.69 -51.93 -0.40 0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.05 0.70 6.85 -51.93 -0.36 0.34 16 38 H 0.09 1.32 6.22 -51.92 -0.32 1.00 16 39 H 0.09 1.99 4.71 -51.93 -0.24 1.75 16 40 H 0.03 0.54 7.55 -51.93 -0.39 0.15 16 41 H 0.05 0.77 4.70 -51.93 -0.24 0.53 16 42 H 0.06 1.44 6.64 -51.93 -0.34 1.09 16 43 H 0.04 0.69 7.57 -51.93 -0.39 0.29 16 44 H 0.01 0.39 8.05 -51.92 -0.42 -0.03 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -32.87 353.15 -8.97 -41.84 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.07 Total: -0.68 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.20 Total: -12.59 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.36 Total: -36.32 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.63 Total: -14.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.87 -8.97 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119236988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.939 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds