Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.46839 * 2 1 4 4 C 1.34225 * 116.99890 * 180.02562 * 3 2 1 5 5 O 1.20836 * 120.00099 * 359.97438 * 4 3 2 6 6 C 1.50692 * 120.00104 * 179.97438 * 4 3 2 7 7 C 1.53009 * 109.47208 * 163.06876 * 6 4 3 8 8 H 1.08991 * 109.90739 * 50.58230 * 7 6 4 9 9 C 1.53990 * 109.91664 * 171.68731 * 7 6 4 10 10 C 1.54594 * 105.14273 * 120.57880 * 9 7 6 11 11 C 1.54928 * 102.92055 * 21.95141 * 10 9 7 12 12 N 1.47910 * 109.91518 * 289.27267 * 7 6 4 13 13 C 1.46892 * 110.99639 * 94.80523 * 12 7 6 14 14 C 1.52999 * 109.47238 * 173.73855 * 13 12 7 15 15 H 1.09000 * 109.47140 * 43.02584 * 14 13 12 16 16 C 1.53002 * 109.47165 * 283.03181 * 14 13 12 17 17 C 1.52992 * 109.47796 * 163.02900 * 14 13 12 18 18 C 1.50697 * 109.47681 * 185.00021 * 17 14 13 19 19 H 1.08004 * 119.99739 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00519 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99528 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00434 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47386 * 89.99803 * 22 20 18 24 24 H 1.48505 * 109.47383 * 209.99825 * 22 20 18 25 25 H 1.48499 * 109.47074 * 329.99743 * 22 20 18 26 26 H 1.08993 * 109.47398 * 300.00071 * 1 2 3 27 27 H 1.09001 * 109.47353 * 60.00185 * 1 2 3 28 28 H 1.08998 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47267 * 240.00183 * 2 1 3 30 30 H 1.08997 * 109.46861 * 119.99854 * 2 1 3 31 31 H 1.08998 * 109.47641 * 283.06635 * 6 4 3 32 32 H 1.09003 * 109.47030 * 43.07296 * 6 4 3 33 33 H 1.09003 * 110.30560 * 239.49400 * 9 7 6 34 34 H 1.09006 * 110.31244 * 1.55668 * 9 7 6 35 35 H 1.08994 * 110.72556 * 140.31711 * 10 9 7 36 36 H 1.09013 * 110.72184 * 263.59612 * 10 9 7 37 37 H 1.08998 * 110.66833 * 81.02609 * 11 10 9 38 38 H 1.09010 * 110.66796 * 203.98237 * 11 10 9 39 39 H 1.09002 * 109.47363 * 293.73295 * 13 12 7 40 40 H 1.08994 * 109.47939 * 53.73544 * 13 12 7 41 41 H 1.09000 * 109.47336 * 78.68400 * 16 14 13 42 42 H 1.08995 * 109.47231 * 198.68965 * 16 14 13 43 43 H 1.09006 * 109.46540 * 318.69237 * 16 14 13 44 44 H 1.09008 * 109.47040 * 305.00247 * 17 14 13 45 45 H 1.09000 * 109.47284 * 64.99702 * 17 14 13 46 46 H 0.97004 * 119.99612 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.3909 2.8815 0.4184 8 1 5.9176 2.1333 -0.1738 9 6 6.0453 4.2616 0.2225 10 6 6.5465 4.6737 1.6257 11 6 6.6606 3.3171 2.3651 12 7 5.4922 2.5537 1.8572 13 6 5.6793 1.1104 2.0563 14 6 5.9353 0.8289 3.5382 15 1 5.2497 1.4212 4.1443 16 6 7.3773 1.2031 3.8868 17 6 5.7116 -0.6579 3.8212 18 6 5.8433 -0.9132 5.3005 19 1 6.0649 -0.0966 5.9718 20 6 5.6821 -2.1893 5.7970 21 7 5.4128 -3.1837 4.9794 22 14 5.8447 -2.5057 7.6308 23 1 4.5173 -2.3532 8.2790 24 1 6.3482 -3.8850 7.8525 25 1 6.7977 -1.5304 8.2187 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8444 3.3618 -1.0023 32 1 3.3660 3.5603 0.7007 33 1 6.8824 4.1882 -0.4717 34 1 5.3118 4.9794 -0.1449 35 1 7.5195 5.1605 1.5601 36 1 5.8221 5.3221 2.1189 37 1 7.5917 2.8139 2.1043 38 1 6.5910 3.4596 3.4436 39 1 4.7827 0.5800 1.7354 40 1 6.5323 0.7701 1.4693 41 1 7.4533 2.2837 4.0077 42 1 7.6655 0.7123 4.8163 43 1 8.0406 0.8798 3.0844 44 1 4.7133 -0.9445 3.4905 45 1 6.4552 -1.2460 3.2834 46 1 5.2989 -4.0815 5.3287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119236988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = -115.535639 kcal Electronic energy + Delta-G solvation = -23666.656339 eV Core-core repulsion = 20362.093560 eV Total energy + Delta-G solvation = -3304.562778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72843 -40.20406 -37.66971 -37.04638 -34.59746 -33.10668 -32.23626 -31.94567 -29.02704 -27.93029 -26.72264 -24.67275 -24.09304 -22.38986 -21.90107 -20.99556 -20.54212 -18.77071 -18.49625 -17.85994 -17.42088 -17.00050 -16.46257 -16.26036 -15.88766 -15.06196 -14.79695 -14.59267 -14.51212 -14.33492 -14.01161 -13.76172 -13.57154 -13.42983 -13.03032 -12.96254 -12.85691 -12.84031 -12.73573 -12.52142 -12.45351 -12.22174 -12.11924 -11.77626 -11.61634 -11.57685 -11.49301 -11.33979 -11.22289 -10.98592 -10.81185 -10.57745 -9.38397 -8.20177 -6.31140 1.23800 1.36998 1.39490 1.50500 1.76873 2.39344 3.01989 3.12201 3.58284 3.75889 3.94385 3.97240 4.04182 4.07595 4.17688 4.23588 4.31722 4.34430 4.40386 4.45660 4.54877 4.66480 4.74550 4.78015 4.82844 4.87517 4.90143 5.00718 5.03361 5.08472 5.12508 5.13767 5.19002 5.24474 5.36801 5.41122 5.44899 5.50433 5.58346 5.74796 5.83069 6.07397 6.12339 6.25884 6.80046 6.84336 7.37262 8.92426 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.005347 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.117285 B = 5235.466894 C = 7130.433415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.451 3.549 5 O -0.537 6.537 6 C -0.090 4.090 7 C 0.063 3.937 8 H 0.042 0.958 9 C -0.114 4.114 10 C -0.117 4.117 11 C 0.024 3.976 12 N -0.518 5.518 13 C 0.066 3.934 14 C -0.075 4.075 15 H 0.056 0.944 16 C -0.140 4.140 17 C 0.040 3.960 18 C -0.528 4.528 19 H 0.064 0.936 20 C -0.005 4.005 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.260 1.260 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.010 0.990 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.036 0.964 44 H -0.025 1.025 45 H -0.020 1.020 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 17.787 -12.471 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.296 3.704 5 O -0.427 6.427 6 C -0.127 4.127 7 C -0.046 4.046 8 H 0.060 0.940 9 C -0.152 4.152 10 C -0.155 4.155 11 C -0.103 4.103 12 N -0.243 5.243 13 C -0.062 4.062 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.196 4.196 17 C 0.002 3.998 18 C -0.566 4.566 19 H 0.082 0.918 20 C -0.202 4.202 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.184 1.184 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.055 0.945 44 H -0.007 1.007 45 H -0.002 1.002 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.619 17.433 -12.208 21.778 hybrid contribution 0.804 -1.890 0.454 2.104 sum -3.815 15.543 -11.753 19.857 Atomic orbital electron populations 1.21787 0.89911 1.04190 1.03970 1.23159 0.97477 0.79844 1.01535 1.86481 1.24667 1.32804 1.83890 1.24621 0.80390 0.94162 0.71212 1.90663 1.60969 1.45091 1.46017 1.21650 0.95315 0.88999 1.06751 1.22391 0.94423 0.98707 0.89068 0.94005 1.22426 1.01061 0.93718 0.97959 1.22539 1.02562 0.95551 0.94858 1.23657 0.91537 0.94505 1.00588 1.64761 1.39824 1.05851 1.13817 1.22411 0.99526 0.88830 0.95410 1.21030 0.97435 0.96467 0.94438 0.92523 1.22182 0.94995 1.01850 1.00618 1.18926 0.93381 0.91885 0.95570 1.21602 1.47460 0.93973 0.93604 0.91801 1.26055 0.94892 0.96040 1.03232 1.70148 1.50081 1.00675 1.36961 0.85412 0.78806 0.77554 0.79077 1.19723 1.20786 1.18412 0.91532 0.90063 0.88815 0.91311 0.93805 0.83582 0.85954 0.90205 0.87818 0.89273 0.89863 0.94183 0.89805 0.91715 0.97162 0.89832 0.93739 0.94450 1.00678 1.00170 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 2 C 0.05 1.46 6.19 71.98 0.45 1.91 16 3 O -0.36 -10.30 10.22 -51.37 -0.53 -10.83 16 4 C 0.45 13.72 7.33 71.23 0.52 14.24 16 5 O -0.54 -20.98 12.26 21.93 0.27 -20.71 16 6 C -0.09 -1.88 5.25 29.85 0.16 -1.72 16 7 C 0.06 1.55 2.42 45.06 0.11 1.66 16 8 H 0.04 1.24 7.08 -2.39 -0.02 1.22 16 9 C -0.11 -1.79 6.56 31.47 0.21 -1.58 16 10 C -0.12 -2.01 7.06 31.80 0.22 -1.78 16 11 C 0.02 0.63 4.42 86.65 0.38 1.02 16 12 N -0.52 -16.28 4.95 -858.12 -4.24 -20.53 16 13 C 0.07 2.76 3.82 86.30 0.33 3.09 16 14 C -0.07 -3.45 2.16 -10.80 -0.02 -3.47 16 15 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 16 C -0.14 -5.60 7.79 71.98 0.56 -5.04 16 17 C 0.04 2.33 4.41 29.84 0.13 2.46 16 18 C -0.53 -31.70 8.14 25.60 0.21 -31.49 16 19 H 0.06 3.65 7.23 -2.91 -0.02 3.62 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 21 N -0.94 -60.40 13.29 21.45 0.28 -60.11 16 22 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 30 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.06 7.69 -2.38 -0.02 1.04 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.04 1.11 6.85 -2.39 -0.02 1.10 16 38 H 0.08 2.28 6.22 -2.38 -0.01 2.27 16 39 H 0.06 3.07 4.71 -2.39 -0.01 3.06 16 40 H 0.01 0.45 7.55 -2.39 -0.02 0.43 16 41 H 0.08 2.72 4.70 -2.39 -0.01 2.71 16 42 H 0.04 1.96 6.64 -2.39 -0.02 1.94 16 43 H 0.04 1.46 7.57 -2.38 -0.02 1.44 16 44 H -0.03 -1.63 8.05 -2.38 -0.02 -1.65 16 45 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 46 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -76.59 353.15 3.20 -73.38 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.94 Total: 13.16 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 4.46 Total: -22.51 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -3.96 Total: -80.64 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.26 Total: -31.54 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.59 3.20 -73.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119236988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.151 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds