Wall clock time and date at job start Tue Mar 31 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00035 * 2 1 4 4 H 1.09001 * 109.57611 * 29.83616 * 3 2 1 5 5 C 1.53096 * 109.51687 * 269.68398 * 3 2 1 6 6 O 1.42903 * 109.41207 * 182.48663 * 5 3 2 7 7 C 1.42903 * 114.10119 * 61.15582 * 6 5 3 8 8 C 1.53091 * 109.41253 * 298.84283 * 7 6 5 9 9 C 1.53175 * 109.16562 * 57.60984 * 8 7 6 10 10 H 1.08995 * 109.54563 * 62.96994 * 9 8 7 11 11 N 1.46893 * 109.54725 * 183.15198 * 9 8 7 12 12 C 1.46909 * 111.00040 * 275.00018 * 11 9 8 13 13 C 1.53000 * 109.46932 * 154.99763 * 12 11 9 14 14 C 1.53005 * 109.46707 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47306 * 300.00088 * 14 13 12 16 16 C 1.50702 * 109.47368 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99829 * 335.21630 * 16 15 14 18 18 C 1.37868 * 120.00232 * 155.21134 * 16 15 14 19 19 N 1.31519 * 120.00030 * 355.16290 * 18 16 15 20 20 Si 1.86804 * 120.00331 * 175.16670 * 18 16 15 21 21 H 1.48497 * 109.46861 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47273 * 239.99800 * 20 18 16 23 23 H 1.48504 * 109.47228 * 119.99539 * 20 18 16 24 24 C 1.53010 * 109.47240 * 59.99911 * 15 14 13 25 25 C 1.52997 * 109.46968 * 300.00054 * 24 15 14 26 26 H 1.09003 * 109.46671 * 60.00309 * 1 2 3 27 27 H 1.08996 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47212 * 300.00536 * 1 2 3 29 29 H 1.08997 * 109.48445 * 62.50080 * 5 3 2 30 30 H 1.09005 * 109.49165 * 302.46763 * 5 3 2 31 31 H 1.08996 * 109.48358 * 178.85968 * 7 6 5 32 32 H 1.09005 * 109.48788 * 58.82696 * 7 6 5 33 33 H 1.08998 * 109.52251 * 297.69762 * 8 7 6 34 34 H 1.09005 * 109.57183 * 177.54158 * 8 7 6 35 35 H 1.00902 * 111.00331 * 151.04224 * 11 9 8 36 36 H 1.08996 * 109.46829 * 34.99441 * 12 11 9 37 37 H 1.09001 * 109.47205 * 60.00307 * 13 12 11 38 38 H 1.08999 * 109.47201 * 299.99464 * 13 12 11 39 39 H 1.08991 * 109.47042 * 179.97438 * 14 13 12 40 40 H 1.09009 * 109.46823 * 60.00065 * 14 13 12 41 41 H 1.09001 * 109.47455 * 299.99861 * 15 14 13 42 42 H 0.96998 * 119.99847 * 5.19130 * 19 18 16 43 43 H 1.08999 * 109.46715 * 60.00124 * 24 15 14 44 44 H 1.08999 * 109.47132 * 180.02562 * 24 15 14 45 45 H 1.09001 * 109.47437 * 300.00387 * 25 24 15 46 46 H 1.08995 * 109.47351 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0015 0.5110 5 6 2.2256 1.7695 -1.4430 6 8 2.8597 3.0501 -1.4405 7 6 4.1472 3.0625 -0.8204 8 6 4.0090 2.6504 0.6475 9 6 3.3607 1.2646 0.7219 10 1 4.0099 0.5321 0.2424 11 7 3.1550 0.8931 2.1281 12 6 4.3669 0.2863 2.6949 13 6 4.3720 0.4797 4.2127 14 6 5.6340 -0.1528 4.8031 15 6 5.6544 -1.6479 4.4794 16 6 6.8976 -2.2708 5.0604 17 1 7.7718 -1.6631 5.2419 18 6 6.9190 -3.6163 5.3603 19 7 5.8265 -4.3367 5.2293 20 14 8.4996 -4.4162 5.9529 21 1 9.5776 -3.3967 6.0141 22 1 8.8920 -5.4948 5.0108 23 1 8.2860 -4.9931 7.3046 24 6 5.6492 -1.8414 2.9616 25 6 4.3873 -1.2089 2.3712 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.2630 1.8415 -1.9492 30 1 2.8582 1.0517 -1.9653 31 1 4.5688 4.0659 -0.8781 32 1 4.8051 2.3616 -1.3343 33 1 3.3841 3.3736 1.1716 34 1 4.9947 2.6167 1.1117 35 1 2.3620 0.2771 2.2271 36 1 5.2474 0.7635 2.2648 37 1 3.4915 0.0025 4.6427 38 1 4.3572 1.5450 4.4432 39 1 5.6379 -0.0146 5.8842 40 1 6.5148 0.3242 4.3730 41 1 4.7736 -2.1249 4.9095 42 1 5.0264 -3.9399 4.8508 43 1 6.5299 -1.3645 2.5316 44 1 5.6632 -2.9066 2.7310 45 1 3.5065 -1.6857 2.8014 46 1 4.3837 -1.3463 1.2900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:41 Heat of formation + Delta-G solvation = -119.660045 kcal Electronic energy + Delta-G solvation = -23753.845140 eV Core-core repulsion = 20449.103514 eV Total energy + Delta-G solvation = -3304.741626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.16555 -38.16105 -37.51580 -35.22742 -32.85959 -31.06182 -30.50852 -29.86708 -27.76250 -26.86003 -24.46088 -23.50903 -23.16049 -21.75665 -20.67711 -20.37111 -19.11228 -17.16497 -16.72894 -16.66331 -16.38342 -15.57906 -15.44309 -14.65069 -14.54766 -14.09808 -13.74369 -13.55659 -13.47656 -13.31289 -13.22397 -12.97383 -12.42919 -12.04879 -11.82106 -11.68907 -11.49674 -11.36842 -11.18191 -10.97662 -10.78952 -10.66638 -10.41324 -10.29132 -10.25208 -10.18515 -10.08850 -9.51803 -9.41810 -9.10791 -8.38846 -8.22921 -8.10813 -6.29069 -3.99167 3.26712 3.45705 3.49072 3.62668 3.77350 4.13109 4.45253 4.56744 4.60802 4.84598 4.88643 5.03953 5.05662 5.13044 5.26335 5.29988 5.35079 5.40971 5.41779 5.46372 5.48143 5.58045 5.67905 5.78533 5.87316 6.04870 6.08332 6.14979 6.27575 6.33087 6.45087 6.57304 6.71940 6.74625 6.76025 6.93383 7.02672 7.03006 7.20111 7.30768 7.57408 7.58006 7.74525 8.33708 8.51810 8.96003 9.73180 11.09720 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.003724 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.979347 B = 7516.071056 C = 7926.777413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.054 3.946 4 H 0.077 0.923 5 C 0.044 3.956 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.142 4.142 9 C 0.090 3.910 10 H 0.054 0.946 11 N -0.680 5.680 12 C 0.094 3.906 13 C -0.102 4.102 14 C -0.101 4.101 15 C 0.030 3.970 16 C -0.592 4.592 17 H 0.047 0.953 18 C 0.019 3.981 19 N -0.917 5.917 20 Si 1.069 2.931 21 H -0.290 1.290 22 H -0.288 1.288 23 H -0.288 1.288 24 C -0.102 4.102 25 C -0.143 4.143 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.345 0.655 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.029 0.971 42 H 0.270 0.730 43 H 0.042 0.958 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 13.152 -12.406 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C -0.005 4.005 4 H 0.095 0.905 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.020 4.020 8 C -0.180 4.180 9 C -0.021 4.021 10 H 0.072 0.928 11 N -0.311 5.311 12 C -0.016 4.016 13 C -0.140 4.140 14 C -0.140 4.140 15 C 0.011 3.989 16 C -0.630 4.630 17 H 0.065 0.935 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.899 3.101 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.140 4.140 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.938 12.357 -11.686 18.769 hybrid contribution -0.744 0.409 -0.932 1.260 sum -8.682 12.766 -12.618 19.939 Atomic orbital electron populations 1.22842 0.80743 1.03010 1.00078 1.87943 1.19974 1.26906 1.94894 1.22994 0.95839 0.85410 0.96232 0.90476 1.23007 0.98574 0.85729 0.96065 1.87932 1.32555 1.29950 1.79241 1.22700 0.84667 1.02406 0.92233 1.22263 1.02379 0.96656 0.96750 1.21575 0.94169 0.96706 0.89623 0.92835 1.60760 1.07275 1.48338 1.14699 1.21606 0.91316 0.92857 0.95785 1.21525 0.99309 0.99657 0.93532 1.21536 0.95006 0.98250 0.99158 1.18860 0.97810 0.91188 0.91032 1.22037 0.99269 0.96026 1.45708 0.93455 1.25767 1.02827 0.94576 0.95332 1.70729 1.02026 1.40233 1.42346 0.83545 0.74603 0.75360 0.76635 1.21595 1.21493 1.21426 1.21665 0.93931 0.99150 0.99298 1.22264 1.00691 0.96189 0.99069 0.94117 0.89390 0.93619 0.88826 0.92279 0.88353 0.92972 0.90166 0.90120 0.83626 0.91246 0.92829 0.92909 0.93059 0.93685 0.95267 0.91820 0.93897 0.93139 0.92672 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.51 9.65 -35.23 -0.34 -4.85 16 3 C 0.05 0.60 2.32 -26.59 -0.06 0.54 16 4 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 5 C 0.04 0.45 6.47 37.21 0.24 0.69 16 6 O -0.38 -4.22 10.77 -35.23 -0.38 -4.59 16 7 C 0.06 0.56 6.84 37.20 0.25 0.81 16 8 C -0.14 -1.57 5.61 -26.59 -0.15 -1.72 16 9 C 0.09 1.13 2.09 -67.53 -0.14 0.99 16 10 H 0.05 0.76 7.12 -51.93 -0.37 0.39 16 11 N -0.68 -9.68 6.06 -99.55 -0.60 -10.29 16 12 C 0.09 1.55 2.29 -67.71 -0.15 1.39 16 13 C -0.10 -1.81 5.53 -26.73 -0.15 -1.96 16 14 C -0.10 -2.14 5.18 -26.73 -0.14 -2.27 16 15 C 0.03 0.74 1.83 -91.77 -0.17 0.57 16 16 C -0.59 -16.60 8.31 -34.44 -0.29 -16.89 16 17 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16 18 C 0.02 0.54 5.45 -17.82 -0.10 0.44 16 19 N -0.92 -27.78 13.63 55.43 0.76 -27.02 16 20 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 C -0.10 -2.29 5.18 -26.73 -0.14 -2.43 16 25 C -0.14 -2.67 5.16 -26.73 -0.14 -2.80 16 26 H 0.04 0.29 7.96 -51.93 -0.41 -0.12 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.09 0.81 7.96 -51.93 -0.41 0.40 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.91 7.48 -51.93 -0.39 0.52 16 35 H 0.34 5.03 7.53 -39.29 -0.30 4.73 16 36 H 0.07 1.16 7.15 -51.93 -0.37 0.79 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.94 8.14 -51.92 -0.42 0.51 16 41 H 0.03 0.79 6.67 -51.93 -0.35 0.44 16 42 H 0.27 8.16 6.66 -40.82 -0.27 7.89 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 46 H 0.04 0.76 7.42 -51.93 -0.39 0.38 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -30.20 351.73 -8.74 -38.94 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.36 Total: 3.39 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.03 Total: -21.29 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.15 Total: -37.31 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.72 Total: -9.45 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.20 -8.74 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.724 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds