Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00035 * 2 1 4 4 H 1.09001 * 109.57611 * 29.83616 * 3 2 1 5 5 C 1.53096 * 109.51687 * 269.68398 * 3 2 1 6 6 O 1.42903 * 109.41207 * 182.48663 * 5 3 2 7 7 C 1.42903 * 114.10119 * 61.15582 * 6 5 3 8 8 C 1.53091 * 109.41253 * 298.84283 * 7 6 5 9 9 C 1.53175 * 109.16562 * 57.60984 * 8 7 6 10 10 H 1.08995 * 109.54563 * 62.96994 * 9 8 7 11 11 N 1.46893 * 109.54725 * 183.15198 * 9 8 7 12 12 C 1.46909 * 111.00040 * 275.00018 * 11 9 8 13 13 C 1.53000 * 109.46932 * 154.99763 * 12 11 9 14 14 C 1.53005 * 109.46707 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47306 * 300.00088 * 14 13 12 16 16 C 1.50702 * 109.47368 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99829 * 335.21630 * 16 15 14 18 18 C 1.37868 * 120.00232 * 155.21134 * 16 15 14 19 19 N 1.31519 * 120.00030 * 355.16290 * 18 16 15 20 20 Si 1.86804 * 120.00331 * 175.16670 * 18 16 15 21 21 H 1.48497 * 109.46861 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47273 * 239.99800 * 20 18 16 23 23 H 1.48504 * 109.47228 * 119.99539 * 20 18 16 24 24 C 1.53010 * 109.47240 * 59.99911 * 15 14 13 25 25 C 1.52997 * 109.46968 * 300.00054 * 24 15 14 26 26 H 1.09003 * 109.46671 * 60.00309 * 1 2 3 27 27 H 1.08996 * 109.47206 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47212 * 300.00536 * 1 2 3 29 29 H 1.08997 * 109.48445 * 62.50080 * 5 3 2 30 30 H 1.09005 * 109.49165 * 302.46763 * 5 3 2 31 31 H 1.08996 * 109.48358 * 178.85968 * 7 6 5 32 32 H 1.09005 * 109.48788 * 58.82696 * 7 6 5 33 33 H 1.08998 * 109.52251 * 297.69762 * 8 7 6 34 34 H 1.09005 * 109.57183 * 177.54158 * 8 7 6 35 35 H 1.00902 * 111.00331 * 151.04224 * 11 9 8 36 36 H 1.08996 * 109.46829 * 34.99441 * 12 11 9 37 37 H 1.09001 * 109.47205 * 60.00307 * 13 12 11 38 38 H 1.08999 * 109.47201 * 299.99464 * 13 12 11 39 39 H 1.08991 * 109.47042 * 179.97438 * 14 13 12 40 40 H 1.09009 * 109.46823 * 60.00065 * 14 13 12 41 41 H 1.09001 * 109.47455 * 299.99861 * 15 14 13 42 42 H 0.96998 * 119.99847 * 5.19130 * 19 18 16 43 43 H 1.08999 * 109.46715 * 60.00124 * 24 15 14 44 44 H 1.08999 * 109.47132 * 180.02562 * 24 15 14 45 45 H 1.09001 * 109.47437 * 300.00387 * 25 24 15 46 46 H 1.08995 * 109.47351 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0015 0.5110 5 6 2.2256 1.7695 -1.4430 6 8 2.8597 3.0501 -1.4405 7 6 4.1472 3.0625 -0.8204 8 6 4.0090 2.6504 0.6475 9 6 3.3607 1.2646 0.7219 10 1 4.0099 0.5321 0.2424 11 7 3.1550 0.8931 2.1281 12 6 4.3669 0.2863 2.6949 13 6 4.3720 0.4797 4.2127 14 6 5.6340 -0.1528 4.8031 15 6 5.6544 -1.6479 4.4794 16 6 6.8976 -2.2708 5.0604 17 1 7.7718 -1.6631 5.2419 18 6 6.9190 -3.6163 5.3603 19 7 5.8265 -4.3367 5.2293 20 14 8.4996 -4.4162 5.9529 21 1 9.5776 -3.3967 6.0141 22 1 8.8920 -5.4948 5.0108 23 1 8.2860 -4.9931 7.3046 24 6 5.6492 -1.8414 2.9616 25 6 4.3873 -1.2089 2.3712 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.2630 1.8415 -1.9492 30 1 2.8582 1.0517 -1.9653 31 1 4.5688 4.0659 -0.8781 32 1 4.8051 2.3616 -1.3343 33 1 3.3841 3.3736 1.1716 34 1 4.9947 2.6167 1.1117 35 1 2.3620 0.2771 2.2271 36 1 5.2474 0.7635 2.2648 37 1 3.4915 0.0025 4.6427 38 1 4.3572 1.5450 4.4432 39 1 5.6379 -0.0146 5.8842 40 1 6.5148 0.3242 4.3730 41 1 4.7736 -2.1249 4.9095 42 1 5.0264 -3.9399 4.8508 43 1 6.5299 -1.3645 2.5316 44 1 5.6632 -2.9066 2.7310 45 1 3.5065 -1.6857 2.8014 46 1 4.3837 -1.3463 1.2900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = -139.502996 kcal Electronic energy + Delta-G solvation = -23754.705595 eV Core-core repulsion = 20449.103514 eV Total energy + Delta-G solvation = -3305.602081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09680 -39.65181 -38.33468 -36.63998 -34.62389 -32.36826 -31.54814 -31.40701 -29.29667 -27.56785 -26.17643 -24.61271 -24.24075 -23.40056 -22.27861 -21.33881 -20.75404 -18.83591 -18.01958 -17.49357 -17.34398 -16.67876 -16.27068 -15.86223 -15.66215 -15.55413 -15.32152 -15.17295 -14.84510 -14.76671 -14.20609 -14.01322 -13.84464 -13.49312 -13.17372 -13.00464 -12.82207 -12.66562 -12.53001 -12.34717 -12.19968 -11.98739 -11.95076 -11.86469 -11.76368 -11.51157 -11.24668 -11.07585 -10.94098 -10.48851 -10.38580 -10.24328 -9.39962 -8.58160 -6.28633 1.51391 1.60277 1.76387 2.48946 2.57298 2.92049 3.10193 3.21779 3.57787 3.77128 3.81581 3.94127 3.99077 4.09242 4.19438 4.23982 4.36206 4.40301 4.43109 4.45791 4.50802 4.55248 4.64553 4.66706 4.70084 4.72321 4.76752 4.83025 4.87333 4.92687 4.99874 5.09026 5.13707 5.15748 5.22856 5.29766 5.40138 5.61549 5.81905 5.94222 6.04006 6.17062 6.24886 6.27185 6.37320 6.70158 7.51820 8.80650 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.003724 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.979347 B = 7516.071056 C = 7926.777413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.059 3.941 4 H 0.080 0.920 5 C 0.046 3.954 6 O -0.388 6.388 7 C 0.057 3.943 8 C -0.137 4.137 9 C 0.086 3.914 10 H 0.039 0.961 11 N -0.672 5.672 12 C 0.106 3.894 13 C -0.093 4.093 14 C -0.095 4.095 15 C 0.024 3.976 16 C -0.605 4.605 17 H 0.043 0.957 18 C -0.033 4.033 19 N -0.942 5.942 20 Si 1.114 2.886 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.280 1.280 24 C -0.092 4.092 25 C -0.130 4.130 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.118 0.882 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.343 0.657 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.049 0.951 41 H -0.002 1.002 42 H 0.257 0.743 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.045 0.955 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 14.847 -13.325 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.001 3.999 4 H 0.098 0.902 5 C -0.032 4.032 6 O -0.307 6.307 7 C -0.020 4.020 8 C -0.175 4.175 9 C -0.024 4.024 10 H 0.057 0.943 11 N -0.302 5.302 12 C -0.004 4.004 13 C -0.131 4.131 14 C -0.133 4.133 15 C 0.006 3.994 16 C -0.643 4.643 17 H 0.061 0.939 18 C -0.231 4.231 19 N -0.581 5.581 20 Si 0.937 3.063 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.131 4.131 25 C -0.169 4.169 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.016 0.984 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.928 14.081 -12.616 20.501 hybrid contribution -0.785 -0.108 -0.657 1.030 sum -8.713 13.974 -13.274 21.151 Atomic orbital electron populations 1.23013 0.79190 1.03815 1.01168 1.87911 1.21769 1.27344 1.95060 1.22934 0.94944 0.85337 0.96720 0.90191 1.23040 0.99339 0.85381 0.95399 1.87926 1.33108 1.30325 1.79314 1.22801 0.84342 1.03689 0.91151 1.22223 1.02047 0.95450 0.97793 1.21698 0.95141 0.97205 0.88379 0.94311 1.60751 1.05982 1.47417 1.16023 1.21392 0.92727 0.91121 0.95143 1.21409 0.97047 1.00494 0.94114 1.21406 0.97109 0.95783 0.98990 1.18867 0.95184 0.93325 0.92050 1.22447 1.00212 0.96345 1.45297 0.93875 1.27180 1.04909 0.95708 0.95273 1.70853 1.02426 1.40589 1.44191 0.82968 0.71564 0.75190 0.76562 1.19640 1.20777 1.20638 1.21447 0.96142 0.97432 0.98030 1.22131 0.97972 0.97620 0.99215 0.92372 0.88829 0.93161 0.87150 0.92605 0.86365 0.92654 0.90222 0.90205 0.83774 0.90724 0.93486 0.90633 0.93888 0.93183 0.98366 0.93230 0.93686 0.96489 0.93652 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.40 -9.00 9.65 -148.98 -1.44 -10.43 16 3 C 0.06 1.22 2.32 30.69 0.07 1.29 16 4 H 0.08 1.59 7.79 -2.39 -0.02 1.58 16 5 C 0.05 0.84 6.47 72.01 0.47 1.31 16 6 O -0.39 -7.71 10.77 -148.98 -1.60 -9.32 16 7 C 0.06 0.97 6.84 72.01 0.49 1.46 16 8 C -0.14 -2.71 5.61 30.68 0.17 -2.54 16 9 C 0.09 2.02 2.09 45.03 0.09 2.11 16 10 H 0.04 1.04 7.12 -2.39 -0.02 1.02 16 11 N -0.67 -18.00 6.06 -468.87 -2.84 -20.84 16 12 C 0.11 3.36 2.29 44.91 0.10 3.46 16 13 C -0.09 -3.17 5.53 30.60 0.17 -3.00 16 14 C -0.09 -3.96 5.18 30.59 0.16 -3.80 16 15 C 0.02 1.24 1.83 -11.54 -0.02 1.22 16 16 C -0.60 -34.48 8.31 25.60 0.21 -34.27 16 17 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 18 C -0.03 -1.93 5.45 84.65 0.46 -1.47 16 19 N -0.94 -58.75 13.63 21.44 0.29 -58.46 16 20 Si 1.11 51.39 29.91 68.60 2.05 53.44 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C -0.09 -4.22 5.18 30.60 0.16 -4.06 16 25 C -0.13 -4.84 5.16 30.59 0.16 -4.68 16 26 H 0.06 0.69 7.96 -2.39 -0.02 0.68 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.11 1.63 7.96 -2.39 -0.02 1.61 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.60 7.48 -2.38 -0.02 1.58 16 35 H 0.34 9.55 7.53 -89.69 -0.67 8.88 16 36 H 0.07 2.34 7.15 -2.39 -0.02 2.33 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.00 -0.11 6.67 -2.39 -0.02 -0.12 16 42 H 0.26 16.25 6.66 -92.71 -0.62 15.64 16 43 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 46 H 0.05 1.86 7.42 -2.39 -0.02 1.84 16 Total: -1.00 -65.59 351.73 0.80 -64.79 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.41 Total: 22.18 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 3.92 Total: -41.37 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -2.55 Total: -79.30 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -3.04 Total: -19.75 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -65.59 0.80 -64.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.711 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds