Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99527 * 2 1 4 4 N 1.34772 * 120.00434 * 179.97438 * 2 1 3 5 5 C 1.39926 * 120.00360 * 185.27009 * 4 2 1 6 6 C 1.38872 * 120.06733 * 33.29269 * 5 4 2 7 7 C 1.38112 * 119.92986 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.07111 * 0.02562 * 7 6 5 9 9 S 1.76199 * 119.92920 * 179.97438 * 8 7 6 10 10 O 1.42101 * 106.40475 * 336.46293 * 9 8 7 11 11 O 1.42094 * 106.40115 * 203.54338 * 9 8 7 12 12 N 1.65600 * 107.21572 * 90.00583 * 9 8 7 13 13 C 1.36937 * 120.00224 * 64.72355 * 12 9 8 14 14 H 1.07998 * 119.99724 * 0.27191 * 13 12 9 15 15 C 1.38813 * 119.99780 * 180.27873 * 13 12 9 16 16 N 1.31618 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99774 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47110 * 119.99389 * 17 15 13 20 20 H 1.48496 * 109.46815 * 239.99768 * 17 15 13 21 21 C 1.38277 * 120.13738 * 0.25763 * 8 7 6 22 22 C 1.38114 * 120.07205 * 359.48396 * 21 8 7 23 23 H 1.09001 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47304 * 299.99909 * 1 2 3 25 25 H 1.08992 * 109.47587 * 59.99920 * 1 2 3 26 26 H 0.96997 * 120.00160 * 5.28323 * 4 2 1 27 27 H 1.08005 * 120.03330 * 0.02562 * 6 5 4 28 28 H 1.08002 * 119.96357 * 179.97438 * 7 6 5 29 29 H 0.97006 * 119.99823 * 244.99704 * 12 9 8 30 30 H 0.96998 * 120.00003 * 180.02562 * 16 15 13 31 31 H 1.08009 * 119.96333 * 179.74301 * 21 8 7 32 32 H 1.08002 * 120.03268 * 180.25322 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5758 -1.1696 0.1118 6 6 4.2150 -0.1973 0.8698 7 6 5.5919 -0.2021 0.9773 8 6 6.3340 -1.1735 0.3307 9 16 8.0905 -1.1757 0.4698 10 8 8.4691 0.1552 0.7932 11 8 8.5823 -1.8687 -0.6690 12 7 8.4768 -2.1045 1.7853 13 6 8.1932 -3.4442 1.7846 14 1 7.7217 -3.8959 0.9243 15 6 8.5118 -4.2216 2.8896 16 7 9.0868 -3.6712 3.9378 17 14 8.1244 -6.0491 2.8889 18 1 7.4825 -6.4185 1.6018 19 1 9.3816 -6.8217 3.0552 20 1 7.2006 -6.3595 4.0093 21 6 5.7008 -2.1395 -0.4295 22 6 4.3239 -2.1433 -0.5367 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6991 -2.0054 -0.0764 27 1 3.6360 0.5619 1.3747 28 1 6.0896 0.5540 1.5663 29 1 8.9003 -1.6988 2.5580 30 1 9.3098 -4.2146 4.7098 31 1 6.2835 -2.8944 -0.9367 32 1 3.8298 -2.9006 -1.1273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005378498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -82.847214 kcal Electronic energy + Delta-G solvation = -19874.793187 eV Core-core repulsion = 16541.475562 eV Total energy + Delta-G solvation = -3333.317626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.54219 -38.26635 -36.08341 -34.90802 -34.69491 -34.58455 -31.04817 -30.91689 -30.72166 -28.62237 -24.51249 -23.15284 -22.58535 -20.59190 -18.54266 -18.13349 -17.91773 -17.08215 -16.99065 -16.17043 -15.71329 -14.88130 -14.49719 -14.45580 -14.11621 -13.97828 -13.44720 -13.20433 -13.14392 -12.88173 -12.61220 -12.38482 -11.95495 -11.32460 -11.23472 -11.07006 -11.01275 -10.87899 -10.59578 -10.50077 -10.29224 -10.18661 -10.01236 -9.76878 -8.69548 -8.32161 -8.18458 -6.45182 -3.89854 1.09548 1.62523 1.66744 2.37185 2.86996 3.16624 3.22902 3.25862 3.82039 4.09736 4.43574 4.52244 4.77736 4.83050 5.00028 5.03402 5.13958 5.16122 5.37749 5.45738 5.58993 5.71727 5.93450 6.12299 6.27254 6.39697 6.56717 6.65490 7.03825 7.16962 7.20424 7.50261 7.87698 8.67696 8.82012 9.24394 10.71205 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.005249 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.159719 B = 5332.685986 C = 6150.112983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.507 3.493 3 O -0.523 6.523 4 N -0.675 5.675 5 C 0.174 3.826 6 C -0.147 4.147 7 C -0.006 4.006 8 C -0.671 4.671 9 S 2.627 3.373 10 O -1.000 7.000 11 O -0.972 6.972 12 N -0.951 5.951 13 C -0.279 4.279 14 H 0.103 0.897 15 C 0.031 3.969 16 N -0.881 5.881 17 Si 0.922 3.078 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.281 1.281 21 C -0.001 4.001 22 C -0.171 4.171 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.411 0.589 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.411 0.589 30 H 0.273 0.727 31 H 0.141 0.859 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 0.727 -4.820 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.296 3.704 3 O -0.398 6.398 4 N -0.320 5.320 5 C 0.080 3.920 6 C -0.168 4.168 7 C -0.026 4.026 8 C -0.753 4.753 9 S 2.717 3.283 10 O -0.990 6.990 11 O -0.963 6.963 12 N -0.704 5.704 13 C -0.417 4.417 14 H 0.121 0.879 15 C -0.176 4.176 16 N -0.522 5.522 17 Si 0.749 3.251 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.021 4.021 22 C -0.192 4.192 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.247 0.753 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.069 1.934 -5.440 16.137 hybrid contribution -1.205 -1.417 0.682 1.981 sum -16.274 0.517 -4.758 16.963 Atomic orbital electron populations 1.21854 0.90721 1.04540 1.05690 1.21038 0.90891 0.83231 0.75287 1.90778 1.70467 1.31180 1.47403 1.43776 1.05562 1.09940 1.72749 1.17894 0.82174 0.96670 0.95240 1.21133 0.95028 1.00160 1.00430 1.20771 0.93057 0.94933 0.93805 1.31982 1.31226 1.03460 1.08589 1.05556 0.75090 0.72552 0.75144 1.93428 1.83055 1.37848 1.84636 1.93471 1.78333 1.74384 1.50071 1.51666 1.65781 1.15882 1.37049 1.19317 1.38565 0.81774 1.02076 0.87886 1.25218 0.97259 1.00348 0.94801 1.69699 1.39972 1.36940 1.05635 0.85933 0.78369 0.82363 0.78459 1.19121 1.20491 1.20718 1.20736 0.93605 0.94993 0.92736 1.20923 0.94448 1.01013 1.02804 0.90309 0.88271 0.88409 0.75254 0.84812 0.84469 0.75314 0.91712 0.84138 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.39 36.00 0.37 -0.61 16 2 C 0.51 5.71 7.68 -10.99 -0.08 5.62 16 3 O -0.52 -8.39 14.78 5.55 0.08 -8.31 16 4 N -0.67 -7.30 5.34 -9.87 -0.05 -7.35 16 5 C 0.17 2.63 6.28 -83.70 -0.53 2.11 16 6 C -0.15 -2.53 8.66 -39.39 -0.34 -2.87 16 7 C -0.01 -0.11 9.51 -39.61 -0.38 -0.49 16 8 C -0.67 -13.36 5.89 -39.55 -0.23 -13.59 16 9 S 2.63 58.69 5.70 -107.50 -0.61 58.08 16 10 O -1.00 -23.84 17.27 -57.17 -0.99 -24.83 16 11 O -0.97 -23.56 16.98 -57.17 -0.97 -24.53 16 12 N -0.95 -22.89 5.75 31.50 0.18 -22.71 16 13 C -0.28 -6.96 9.63 -15.06 -0.15 -7.11 16 14 H 0.10 2.43 7.82 -52.49 -0.41 2.02 16 15 C 0.03 0.77 5.50 -17.43 -0.10 0.68 16 16 N -0.88 -23.30 13.06 55.49 0.72 -22.58 16 17 Si 0.92 19.41 29.55 -169.99 -5.02 14.39 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.00 -0.02 9.51 -39.61 -0.38 -0.39 16 22 C -0.17 -2.56 9.96 -39.39 -0.39 -2.95 16 23 H 0.08 0.25 7.92 -51.93 -0.41 -0.16 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.41 2.80 8.66 -40.82 -0.35 2.44 16 27 H 0.13 2.24 6.42 -52.48 -0.34 1.90 16 28 H 0.14 2.46 7.61 -52.49 -0.40 2.06 16 29 H 0.41 10.07 8.02 -34.47 -0.28 9.79 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.14 2.39 7.61 -52.48 -0.40 1.99 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -33.88 299.48 -7.33 -41.22 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -2.99 Total: 11.72 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.20 Total: -19.61 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.85 Total: -52.64 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.88 Total: -57.68 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 58.69 SS G_CDS: -0.61 Total: 58.08 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.88 -7.33 -41.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005378498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.629 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds