Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99527 * 2 1 4 4 N 1.34772 * 120.00434 * 179.97438 * 2 1 3 5 5 C 1.39926 * 120.00360 * 185.27009 * 4 2 1 6 6 C 1.38872 * 120.06733 * 33.29269 * 5 4 2 7 7 C 1.38112 * 119.92986 * 180.02562 * 6 5 4 8 8 C 1.38284 * 120.07111 * 0.02562 * 7 6 5 9 9 S 1.76199 * 119.92920 * 179.97438 * 8 7 6 10 10 O 1.42101 * 106.40475 * 336.46293 * 9 8 7 11 11 O 1.42094 * 106.40115 * 203.54338 * 9 8 7 12 12 N 1.65600 * 107.21572 * 90.00583 * 9 8 7 13 13 C 1.36937 * 120.00224 * 64.72355 * 12 9 8 14 14 H 1.07998 * 119.99724 * 0.27191 * 13 12 9 15 15 C 1.38813 * 119.99780 * 180.27873 * 13 12 9 16 16 N 1.31618 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99774 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47110 * 119.99389 * 17 15 13 20 20 H 1.48496 * 109.46815 * 239.99768 * 17 15 13 21 21 C 1.38277 * 120.13738 * 0.25763 * 8 7 6 22 22 C 1.38114 * 120.07205 * 359.48396 * 21 8 7 23 23 H 1.09001 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47304 * 299.99909 * 1 2 3 25 25 H 1.08992 * 109.47587 * 59.99920 * 1 2 3 26 26 H 0.96997 * 120.00160 * 5.28323 * 4 2 1 27 27 H 1.08005 * 120.03330 * 0.02562 * 6 5 4 28 28 H 1.08002 * 119.96357 * 179.97438 * 7 6 5 29 29 H 0.97006 * 119.99823 * 244.99704 * 12 9 8 30 30 H 0.96998 * 120.00003 * 180.02562 * 16 15 13 31 31 H 1.08009 * 119.96333 * 179.74301 * 21 8 7 32 32 H 1.08002 * 120.03268 * 180.25322 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5758 -1.1696 0.1118 6 6 4.2150 -0.1973 0.8698 7 6 5.5919 -0.2021 0.9773 8 6 6.3340 -1.1735 0.3307 9 16 8.0905 -1.1757 0.4698 10 8 8.4691 0.1552 0.7932 11 8 8.5823 -1.8687 -0.6690 12 7 8.4768 -2.1045 1.7853 13 6 8.1932 -3.4442 1.7846 14 1 7.7217 -3.8959 0.9243 15 6 8.5118 -4.2216 2.8896 16 7 9.0868 -3.6712 3.9378 17 14 8.1244 -6.0491 2.8889 18 1 7.4825 -6.4185 1.6018 19 1 9.3816 -6.8217 3.0552 20 1 7.2006 -6.3595 4.0093 21 6 5.7008 -2.1395 -0.4295 22 6 4.3239 -2.1433 -0.5367 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6991 -2.0054 -0.0764 27 1 3.6360 0.5619 1.3747 28 1 6.0896 0.5540 1.5663 29 1 8.9003 -1.6988 2.5580 30 1 9.3098 -4.2146 4.7098 31 1 6.2835 -2.8944 -0.9367 32 1 3.8298 -2.9006 -1.1273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005378498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = -109.906280 kcal Electronic energy + Delta-G solvation = -19875.966556 eV Core-core repulsion = 16541.475562 eV Total energy + Delta-G solvation = -3334.490995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60774 -39.51142 -38.04662 -36.68874 -36.42342 -35.98950 -32.78695 -32.09651 -31.95407 -29.60760 -26.39342 -24.41667 -23.93044 -21.62757 -20.32680 -19.97235 -19.15162 -18.62093 -18.03514 -17.94079 -16.83399 -16.45591 -16.15544 -15.76832 -15.56711 -15.24242 -15.05096 -14.50059 -14.24112 -14.13322 -13.77452 -13.31717 -13.11283 -13.08707 -13.00637 -12.97431 -12.82310 -12.49165 -12.26326 -12.12964 -11.80870 -11.69359 -11.64805 -11.04145 -10.14829 -10.05361 -9.48647 -8.26933 -5.84688 -0.35650 -0.11075 0.30454 1.43995 1.50305 1.52973 1.64050 1.96987 2.30701 2.49424 2.74716 3.01107 3.26527 3.55571 3.72034 3.89273 3.91642 4.27535 4.39451 4.47134 4.53387 4.64101 4.82309 4.92656 5.05872 5.11690 5.14610 5.19731 5.30655 5.65882 5.86452 6.34172 6.78298 7.01569 7.03099 7.36918 8.92158 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.005249 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.159719 B = 5332.685986 C = 6150.112983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.503 3.497 3 O -0.576 6.576 4 N -0.660 5.660 5 C 0.188 3.812 6 C -0.158 4.158 7 C -0.020 4.020 8 C -0.690 4.690 9 S 2.677 3.323 10 O -1.015 7.015 11 O -0.994 6.994 12 N -0.977 5.977 13 C -0.310 4.310 14 H 0.111 0.889 15 C -0.021 4.021 16 N -0.933 5.933 17 Si 0.983 3.017 18 H -0.251 1.251 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.011 4.011 22 C -0.159 4.159 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.435 0.565 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.405 0.595 30 H 0.270 0.730 31 H 0.148 0.852 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 -0.304 -6.497 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.294 3.706 3 O -0.454 6.454 4 N -0.308 5.308 5 C 0.092 3.908 6 C -0.179 4.179 7 C -0.040 4.040 8 C -0.778 4.778 9 S 2.770 3.230 10 O -1.005 7.005 11 O -0.984 6.984 12 N -0.730 5.730 13 C -0.444 4.444 14 H 0.129 0.871 15 C -0.222 4.222 16 N -0.576 5.576 17 Si 0.807 3.193 18 H -0.175 1.175 19 H -0.209 1.209 20 H -0.205 1.205 21 C -0.031 4.031 22 C -0.179 4.179 23 H 0.133 0.867 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.276 0.724 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.240 0.760 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.747 0.797 -7.090 20.059 hybrid contribution -0.294 -0.827 0.960 1.301 sum -19.041 -0.030 -6.130 20.004 Atomic orbital electron populations 1.21914 0.85944 1.07251 1.06560 1.22126 0.92982 0.82175 0.73322 1.90769 1.71920 1.33094 1.49630 1.43818 1.03685 1.11429 1.71825 1.18070 0.84494 0.95161 0.93053 1.21224 0.94287 1.01172 1.01252 1.20837 0.94174 0.94897 0.94090 1.31137 1.28044 1.06303 1.12343 1.02527 0.75358 0.71509 0.73650 1.93424 1.83867 1.38316 1.84928 1.93452 1.79432 1.74826 1.50707 1.51302 1.69684 1.16571 1.35439 1.19552 1.39320 0.82587 1.02897 0.87089 1.26017 0.97298 1.04259 0.94601 1.69814 1.43121 1.38206 1.06472 0.85006 0.77905 0.77386 0.78981 1.17460 1.20928 1.20474 1.20989 0.95430 0.94373 0.92347 1.21298 0.93104 1.01485 1.02050 0.86748 0.87411 0.87286 0.72443 0.84635 0.84748 0.76016 0.92050 0.83434 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.39 71.24 0.74 -0.38 16 2 C 0.50 9.56 7.68 87.66 0.67 10.24 16 3 O -0.58 -17.41 14.78 -3.06 -0.05 -17.46 16 4 N -0.66 -11.42 5.34 -303.51 -1.62 -13.04 16 5 C 0.19 5.07 6.28 38.15 0.24 5.31 16 6 C -0.16 -5.24 8.66 22.39 0.19 -5.04 16 7 C -0.02 -0.75 9.51 22.25 0.21 -0.54 16 8 C -0.69 -27.13 5.89 22.29 0.13 -27.00 16 9 S 2.68 121.36 5.70 -56.49 -0.32 121.04 16 10 O -1.02 -49.26 17.27 -128.00 -2.21 -51.47 16 11 O -0.99 -48.31 16.98 -128.00 -2.17 -50.49 16 12 N -0.98 -48.73 5.75 -54.27 -0.31 -49.04 16 13 C -0.31 -15.87 9.63 84.03 0.81 -15.06 16 14 H 0.11 5.28 7.82 -2.91 -0.02 5.25 16 15 C -0.02 -1.09 5.50 84.86 0.47 -0.62 16 16 N -0.93 -51.64 13.06 21.65 0.28 -51.36 16 17 Si 0.98 40.32 29.55 68.60 2.03 42.35 16 18 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 21 C -0.01 -0.39 9.51 22.25 0.21 -0.17 16 22 C -0.16 -4.12 9.96 22.39 0.22 -3.89 16 23 H 0.11 0.02 7.92 -2.39 -0.02 0.00 16 24 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.43 3.46 8.66 -92.71 -0.80 2.66 16 27 H 0.14 4.43 6.42 -2.91 -0.02 4.41 16 28 H 0.13 4.95 7.61 -2.91 -0.02 4.93 16 29 H 0.41 20.98 8.02 -96.74 -0.78 20.21 16 30 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.15 4.71 7.61 -2.91 -0.02 4.69 16 32 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -76.32 299.48 -0.87 -77.19 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.40 Total: 29.44 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 3.90 Total: -37.16 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -1.65 Total: -113.44 kcal Atomic # 8 Polarization: -114.99 SS G_CDS: -4.43 Total: -119.42 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: 121.36 SS G_CDS: -0.32 Total: 121.04 kcal Total: -76.32 -0.87 -77.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005378498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.720 kcal (2) G-P(sol) polarization free energy of solvation -76.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds