Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.46982 * 2 1 4 4 C 1.34929 * 117.00220 * 179.97438 * 3 2 1 5 5 O 1.21646 * 119.99590 * 0.28257 * 4 3 2 6 6 C 1.46236 * 119.99822 * 179.97438 * 4 3 2 7 7 S 1.76192 * 126.13112 * 359.69465 * 6 4 3 8 8 C 1.70920 * 90.41813 * 179.97438 * 7 6 4 9 9 N 1.37837 * 124.73011 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00158 * 0.28940 * 9 8 7 11 11 O 1.21748 * 119.99484 * 0.02562 * 10 9 8 12 12 C 1.41719 * 120.00197 * 180.02562 * 10 9 8 13 13 H 1.08005 * 119.99549 * 359.97438 * 12 10 9 14 14 C 1.40156 * 120.00101 * 180.02562 * 12 10 9 15 15 N 1.30625 * 119.99856 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99905 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47005 * 89.99614 * 16 14 12 18 18 H 1.48501 * 109.47213 * 209.99521 * 16 14 12 19 19 H 1.48498 * 109.47130 * 329.99974 * 16 14 12 20 20 N 1.30327 * 110.53891 * 0.29779 * 8 7 6 21 21 C 1.30654 * 117.31789 * 359.76481 * 20 8 7 22 22 C 1.50701 * 123.00745 * 180.02562 * 21 20 8 23 23 H 1.09009 * 109.46886 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47273 * 299.99569 * 1 2 3 25 25 H 1.08995 * 109.47465 * 60.00235 * 1 2 3 26 26 H 1.09003 * 109.47119 * 240.00714 * 2 1 3 27 27 H 1.08998 * 109.47190 * 120.00210 * 2 1 3 28 28 H 0.96997 * 119.99892 * 180.29610 * 9 8 7 29 29 H 0.96992 * 119.99646 * 180.02562 * 15 14 12 30 30 H 1.08993 * 109.47231 * 269.97742 * 22 21 20 31 31 H 1.09001 * 109.46948 * 29.98122 * 22 21 20 32 32 H 1.09006 * 109.46970 * 149.97954 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3439 1.5242 0.0005 5 8 4.0849 0.5595 -0.0042 6 6 3.9027 2.8756 0.0000 7 16 2.9847 4.3794 -0.0089 8 6 4.4370 5.2806 -0.0027 9 7 4.5069 6.6572 -0.0051 10 6 3.3754 7.3895 -0.0069 11 8 2.2916 6.8350 -0.0060 12 6 3.4474 8.8049 -0.0099 13 1 4.4089 9.2967 -0.0103 14 6 2.2707 9.5664 -0.0113 15 7 1.1078 8.9715 -0.0103 16 14 2.3656 11.4319 -0.0145 17 1 2.3909 11.9238 -1.4155 18 1 1.1797 11.9891 0.6844 19 1 3.6016 11.8659 0.6848 20 7 5.4690 4.4847 -0.0011 21 6 5.2349 3.1993 0.0003 22 6 6.3312 2.1652 0.0028 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.3705 7.0989 -0.0055 29 1 0.2935 9.4985 -0.0117 30 1 6.5962 1.9143 -1.0242 31 1 7.2058 2.5641 0.5166 32 1 5.9843 1.2693 0.5178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005953103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = -89.190770 kcal Electronic energy + Delta-G solvation = -19498.415832 eV Core-core repulsion = 16164.823130 eV Total energy + Delta-G solvation = -3333.592703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.20296 -39.37260 -38.08310 -36.31950 -34.01177 -32.86183 -31.69459 -30.54988 -28.07912 -27.35978 -23.90409 -23.40860 -21.76857 -20.77976 -19.59520 -18.03105 -17.47792 -16.70843 -16.43979 -16.18046 -15.76923 -14.96300 -14.89921 -14.23167 -13.88345 -13.44594 -13.20202 -13.01495 -12.85049 -12.80190 -12.17347 -12.05750 -11.86199 -11.66737 -11.52823 -11.29559 -11.05479 -10.68716 -10.47521 -10.34864 -10.15454 -9.87206 -9.26361 -9.17523 -8.60633 -8.24538 -7.43114 -6.74214 -5.29273 0.90333 1.81188 2.57914 2.73228 2.90819 2.97207 3.00503 3.01711 3.44939 3.64412 3.96170 4.06286 4.95709 4.99679 5.04251 5.23696 5.25573 5.28526 5.49545 5.78592 5.81208 5.92567 5.98837 6.07259 6.17578 6.51913 6.75060 6.91854 7.21632 7.29527 7.63557 8.11306 8.20820 8.43755 8.72375 9.83259 10.13029 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.004419 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.140627 B = 6335.214979 C = 7442.603107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.561 3.439 5 O -0.522 6.522 6 C -0.428 4.428 7 S 0.321 5.679 8 C 0.294 3.706 9 N -0.626 5.626 10 C 0.522 3.478 11 O -0.541 6.541 12 C -0.516 4.516 13 H 0.081 0.919 14 C 0.085 3.915 15 N -0.734 5.734 16 Si 0.923 3.077 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.260 1.260 20 N -0.562 5.562 21 C 0.205 3.795 22 C -0.087 4.087 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.409 0.591 29 H 0.280 0.720 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -8.715 0.033 8.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.408 3.592 5 O -0.414 6.414 6 C -0.551 4.551 7 S 0.573 5.427 8 C -0.071 4.071 9 N -0.273 5.273 10 C 0.334 3.666 11 O -0.426 6.426 12 C -0.550 4.550 13 H 0.099 0.901 14 C -0.141 4.141 15 N -0.360 5.360 16 Si 0.746 3.254 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.184 1.184 20 N -0.288 5.288 21 C 0.060 3.940 22 C -0.146 4.146 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.246 0.754 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.095 -8.611 0.027 8.611 hybrid contribution 1.327 0.450 -0.022 1.401 sum 1.232 -8.160 0.004 8.253 Atomic orbital electron populations 1.21808 0.92787 1.02584 1.03775 1.22564 0.95283 0.81121 1.02124 1.86226 1.24184 1.31620 1.84777 1.19319 0.79957 0.87843 0.72093 1.90761 1.59936 1.42005 1.48732 1.25088 0.98870 0.98498 1.32674 1.85447 1.02388 0.88729 1.66126 1.24056 0.95397 0.92084 0.95521 1.43972 1.13283 0.99484 1.70545 1.17463 0.80893 0.88557 0.79688 1.90579 1.25794 1.70180 1.56064 1.19979 0.94831 0.88967 1.51261 0.90121 1.25828 0.94419 1.01514 0.92313 1.69951 0.98491 1.37899 1.29669 0.86095 0.79169 0.80752 0.79404 1.19163 1.19892 1.18380 1.66222 1.31606 1.02593 1.28400 1.20371 0.92096 0.89920 0.91585 1.20588 0.94940 0.95946 1.03101 0.90560 0.91391 0.91398 0.91737 0.91742 0.75424 0.90848 0.90535 0.91084 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.81 6.10 37.16 0.23 1.04 16 3 O -0.35 -5.89 10.00 -41.12 -0.41 -6.30 16 4 C 0.56 10.32 7.90 33.94 0.27 10.58 16 5 O -0.52 -9.73 14.10 -19.38 -0.27 -10.00 16 6 C -0.43 -8.36 6.51 -36.79 -0.24 -8.60 16 7 S 0.32 6.80 19.99 -107.50 -2.15 4.65 16 8 C 0.29 6.33 8.15 -87.90 -0.72 5.61 16 9 N -0.63 -13.58 5.35 -15.82 -0.08 -13.67 16 10 C 0.52 13.21 7.53 -14.93 -0.11 13.09 16 11 O -0.54 -15.09 12.28 5.15 0.06 -15.03 16 12 C -0.52 -12.65 9.31 -37.53 -0.35 -13.00 16 13 H 0.08 1.77 7.85 -52.48 -0.41 1.36 16 14 C 0.08 2.05 5.50 -17.35 -0.10 1.95 16 15 N -0.73 -19.13 11.73 55.56 0.65 -18.48 16 16 Si 0.92 17.53 29.56 -169.99 -5.02 12.50 16 17 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 20 N -0.56 -11.41 10.53 -10.87 -0.11 -11.53 16 21 C 0.21 3.91 6.84 -83.51 -0.57 3.34 16 22 C -0.09 -1.34 9.71 36.01 0.35 -0.99 16 23 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.41 7.69 8.77 -40.82 -0.36 7.34 16 29 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.44 6.06 -51.93 -0.31 1.13 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -29.63 300.61 -6.85 -36.48 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.18 Total: 4.95 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.86 Total: 11.89 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.45 Total: -43.67 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.62 Total: -31.33 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.02 Total: 12.50 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -2.15 Total: 4.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.63 -6.85 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005953103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.713 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds