Wall clock time and date at job start Tue Mar 31 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00086 * 2 1 4 4 C 1.50699 * 109.47088 * 269.99894 * 3 2 1 5 5 H 1.08011 * 119.99828 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00228 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99893 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00057 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47166 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47462 * 119.99892 * 8 6 4 11 11 H 1.48505 * 109.47226 * 240.00175 * 8 6 4 12 12 C 1.34786 * 119.99979 * 179.97438 * 2 1 3 13 13 S 1.71199 * 119.99784 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99729 * 0.02562 * 12 2 1 15 15 C 1.39941 * 119.99587 * 184.12551 * 14 12 2 16 16 C 1.38876 * 120.05774 * 135.08171 * 15 14 12 17 17 C 1.38106 * 119.94381 * 180.25315 * 16 15 14 18 18 C 1.38386 * 120.05419 * 359.45255 * 17 16 15 19 19 Cl 1.73599 * 119.94046 * 180.29858 * 18 17 16 20 20 C 1.38386 * 120.12006 * 0.27168 * 18 17 16 21 21 C 1.38106 * 120.05334 * 0.02562 * 20 18 17 22 22 H 1.08998 * 109.47160 * 269.99799 * 1 2 3 23 23 H 1.08992 * 109.47349 * 30.00218 * 1 2 3 24 24 H 1.09006 * 109.47220 * 150.00516 * 1 2 3 25 25 H 1.08996 * 109.47070 * 29.99480 * 3 2 1 26 26 H 1.08995 * 109.47295 * 149.99989 * 3 2 1 27 27 H 0.96993 * 119.99614 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00163 * 4.12488 * 14 12 2 29 29 H 1.08000 * 120.02805 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.97827 * 179.72632 * 17 16 15 31 31 H 1.07996 * 119.97266 * 180.02562 * 20 18 17 32 32 H 1.08003 * 120.02568 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.8597 2.4169 -4.3673 10 1 2.8007 4.7379 -3.6667 11 1 4.9002 3.5244 -3.6681 12 6 2.1389 -1.1673 0.0005 13 16 3.8509 -1.1672 -0.0001 14 7 1.4650 -2.3345 0.0005 15 6 2.1619 -3.5448 0.0883 16 6 1.7190 -4.5418 0.9476 17 6 2.4116 -5.7333 1.0362 18 6 3.5396 -5.9386 0.2612 19 17 4.4036 -7.4404 0.3692 20 6 3.9799 -4.9489 -0.6001 21 6 3.2944 -3.7532 -0.6879 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3634 -0.8901 -0.5138 25 1 1.6084 2.0283 0.5137 26 1 3.1499 1.1384 0.5138 27 1 4.0317 4.4429 -0.8505 28 1 0.4969 -2.3355 -0.0603 29 1 0.8363 -4.3838 1.5494 30 1 2.0702 -6.5074 1.7075 31 1 4.8602 -5.1118 -1.2041 32 1 3.6382 -2.9813 -1.3606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007558844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:15 Heat of formation + Delta-G solvation = 50.095036 kcal Electronic energy + Delta-G solvation = -17284.326872 eV Core-core repulsion = 14397.483220 eV Total energy + Delta-G solvation = -2886.843652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04694 -38.31655 -36.55063 -35.01271 -32.67893 -31.07988 -29.50374 -28.36795 -26.84898 -23.84885 -23.01248 -21.92755 -20.99453 -18.29067 -17.65342 -16.78015 -16.51109 -15.54238 -15.39082 -14.63016 -14.36480 -14.08477 -13.74855 -13.51755 -13.47510 -12.59479 -12.38250 -12.23572 -12.18657 -11.52558 -11.43980 -11.32634 -10.96815 -10.82066 -10.77211 -10.43401 -10.21950 -9.90619 -9.03038 -9.00706 -8.51933 -8.04215 -7.03770 -6.32533 -6.12901 -4.17550 1.02484 1.40145 2.02911 2.14642 2.51347 3.14338 3.26578 3.35683 3.38116 3.64378 3.74087 4.38720 4.79966 4.91576 5.00172 5.23156 5.28814 5.36451 5.40661 5.54301 5.70493 5.89693 6.05054 6.20303 6.31063 6.49716 6.57893 6.93145 7.03521 7.34806 7.41057 7.79199 7.81572 8.04106 8.81016 9.46005 10.95713 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.004039 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.524773 B = 6931.368287 C = 7489.905123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.535 5.535 3 C 0.234 3.766 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.281 1.281 12 C 0.549 3.451 13 S -0.625 6.625 14 N -0.654 5.654 15 C 0.148 3.852 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.036 4.036 19 Cl -0.082 7.082 20 C -0.107 4.107 21 C -0.055 4.055 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -16.491 2.411 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.238 5.238 3 C 0.116 3.884 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.206 1.206 12 C 0.191 3.809 13 S -0.490 6.490 14 N -0.285 5.285 15 C 0.053 3.947 16 C -0.142 4.142 17 C -0.132 4.132 18 C -0.063 4.063 19 Cl -0.053 7.053 20 C -0.128 4.128 21 C -0.079 4.079 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.755 -16.161 2.491 17.692 hybrid contribution -1.154 0.351 -0.873 1.489 sum -7.909 -15.809 1.619 17.751 Atomic orbital electron populations 1.22024 0.80811 1.03777 1.02016 1.47834 1.06259 1.06650 1.63041 1.20067 0.93984 0.74905 0.99423 1.21136 1.37574 1.06423 0.91005 0.92447 1.24835 0.94920 0.96196 0.97540 1.69924 1.37773 1.14292 1.30715 0.86395 0.78345 0.78128 0.84263 1.19867 1.21052 1.20638 1.22324 0.95698 0.81154 0.81725 1.93156 0.89478 1.92547 1.73800 1.42294 1.09280 1.02837 1.74116 1.17452 0.95640 0.84548 0.97054 1.20801 1.01677 0.93642 0.98051 1.20632 0.94699 0.97757 1.00141 1.20933 0.95773 0.88407 1.01170 1.98349 1.76664 1.32690 1.97622 1.20892 1.01000 0.91769 0.99153 1.21693 0.93033 0.95387 0.97817 0.91805 0.88639 0.92251 0.94169 0.90218 0.92574 0.75956 0.85325 0.85010 0.84742 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.24 59.85 0.61 1.40 16 2 N -0.53 -10.17 2.86 -185.00 -0.53 -10.70 16 3 C 0.23 5.66 4.92 -5.20 -0.03 5.63 16 4 C -0.52 -13.90 9.39 -34.44 -0.32 -14.23 16 5 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 6 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 7 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.55 10.47 7.56 -86.91 -0.66 9.81 16 13 S -0.63 -14.70 24.22 -107.50 -2.60 -17.30 16 14 N -0.65 -9.38 5.19 -11.39 -0.06 -9.44 16 15 C 0.15 2.09 5.94 -83.69 -0.50 1.59 16 16 C -0.12 -1.38 9.97 -39.39 -0.39 -1.77 16 17 C -0.11 -1.24 9.82 -39.58 -0.39 -1.63 16 18 C -0.04 -0.44 6.32 -39.47 -0.25 -0.69 16 19 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.42 16 20 C -0.11 -1.44 9.82 -39.58 -0.39 -1.83 16 21 C -0.06 -0.85 7.87 -39.40 -0.31 -1.16 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 24 H 0.06 0.59 6.31 -51.93 -0.33 0.27 16 25 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.40 4.31 6.52 -40.82 -0.27 4.04 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.16 2.86 6.08 -43.96 -0.27 2.59 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -31.78 302.74 -10.41 -42.19 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.28 Total: 2.60 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.72 Total: -1.09 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.15 Total: -44.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -14.70 SS G_CDS: -2.60 Total: -17.30 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.78 -10.41 -42.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007558844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.287 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds