Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 O 1.42098 * 110.54122 * 291.62548 * 3 2 1 5 5 O 1.42102 * 110.54223 * 68.37613 * 3 2 1 6 6 C 1.76200 * 104.45035 * 180.02562 * 3 2 1 7 7 C 1.37945 * 120.08253 * 114.99764 * 6 3 2 8 8 C 1.38356 * 120.15759 * 179.97438 * 7 6 3 9 9 C 1.38401 * 120.30681 * 0.02912 * 8 7 6 10 10 C 1.37910 * 120.15687 * 359.97438 * 9 8 7 11 11 C 1.39649 * 120.07416 * 294.72026 * 6 3 2 12 12 C 1.47671 * 120.15460 * 0.02562 * 11 6 3 13 13 O 1.21507 * 119.99736 * 359.97438 * 12 11 6 14 14 O 1.34736 * 119.99798 * 179.97438 * 12 11 6 15 15 C 1.34849 * 116.99547 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99983 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99992 * 179.97438 * 15 14 12 18 18 N 1.31418 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00307 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47004 * 90.00044 * 19 17 15 21 21 H 1.48500 * 109.47345 * 210.00283 * 19 17 15 22 22 H 1.48501 * 109.47244 * 330.00179 * 19 17 15 23 23 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 28 28 H 1.08006 * 119.92110 * 359.97438 * 7 6 3 29 29 H 1.07992 * 119.84750 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.92243 * 179.97438 * 9 8 7 31 31 H 1.07994 * 120.08330 * 180.02562 * 10 9 8 32 32 H 0.96998 * 120.00156 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 -1.2370 5 8 1.8385 2.3439 1.2370 6 6 3.8899 1.5562 -0.0008 7 6 4.6223 1.9983 -1.0828 8 6 6.0007 1.8785 -1.0849 9 6 6.6543 1.3144 -0.0031 10 6 5.9347 0.8681 1.0854 11 6 4.5432 0.9913 1.0966 12 6 3.7664 0.5208 2.2610 13 8 2.5558 0.6251 2.2659 14 8 4.3999 -0.0241 3.3179 15 6 3.6317 -0.4327 4.3481 16 1 2.5591 -0.3158 4.3014 17 6 4.2196 -1.0036 5.4685 18 7 5.5249 -1.1454 5.5255 19 14 3.1556 -1.5690 6.8959 20 1 2.7605 -2.9853 6.6882 21 1 3.9218 -1.4494 8.1623 22 1 1.9384 -0.7217 6.9720 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 4.1186 2.4391 -1.9305 29 1 6.5692 2.2259 -1.9348 30 1 7.7305 1.2236 -0.0114 31 1 6.4459 0.4285 1.9290 32 1 5.9356 -1.5447 6.3083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007740012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -107.987829 kcal Electronic energy + Delta-G solvation = -20731.739515 eV Core-core repulsion = 17365.038960 eV Total energy + Delta-G solvation = -3366.700556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75972 -38.28188 -36.61573 -35.43164 -35.17806 -32.74115 -32.43279 -31.15632 -31.03605 -25.90456 -23.98582 -23.64824 -22.56136 -20.63187 -18.45836 -17.99183 -17.78949 -16.77310 -15.81679 -15.62400 -15.45262 -14.95504 -14.71522 -14.54667 -14.21666 -13.91653 -13.71000 -13.01323 -12.74133 -12.60291 -12.18574 -12.09029 -11.80833 -11.58948 -11.48142 -11.44895 -11.18556 -11.11271 -10.55844 -10.51313 -10.28160 -10.06448 -9.92251 -9.20378 -9.18294 -8.83054 -8.76358 -6.67009 -4.25572 0.54117 0.84966 1.29561 2.99083 3.08426 3.14794 3.24091 3.37251 3.72580 3.96168 4.25951 4.33892 4.71404 4.93327 4.95729 5.03654 5.05505 5.19173 5.31892 5.47360 5.60787 5.74826 5.85325 5.93255 6.13950 6.19641 6.26140 6.30887 6.43248 6.61531 6.94633 7.19650 7.71430 8.46727 8.80888 9.55236 10.49465 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.006797 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.205509 B = 4118.576035 C = 5318.136832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.604 4.604 3 S 2.512 3.488 4 O -0.969 6.969 5 O -0.904 6.904 6 C -0.626 4.626 7 C -0.037 4.037 8 C -0.134 4.134 9 C -0.080 4.080 10 C -0.096 4.096 11 C 0.004 3.996 12 C 0.398 3.602 13 O -0.528 6.528 14 O -0.189 6.189 15 C -0.367 4.367 16 H 0.106 0.894 17 C 0.041 3.959 18 N -0.849 5.849 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.262 1.262 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 0.788 -11.013 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.734 4.734 3 S 2.690 3.310 4 O -0.966 6.966 5 O -0.901 6.901 6 C -0.711 4.711 7 C -0.056 4.056 8 C -0.153 4.153 9 C -0.098 4.098 10 C -0.115 4.115 11 C 0.002 3.998 12 C 0.247 3.753 13 O -0.429 6.429 14 O -0.094 6.094 15 C -0.442 4.442 16 H 0.124 0.876 17 C -0.165 4.165 18 N -0.484 5.484 19 Si 0.772 3.228 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.186 1.186 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.177 0.823 27 H 0.135 0.865 28 H 0.163 0.837 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.103 1.484 -10.816 10.973 hybrid contribution 0.489 -0.982 0.711 1.308 sum -0.614 0.502 -10.105 10.136 Atomic orbital electron populations 1.21435 0.90980 1.04438 1.02915 1.30368 1.06586 1.24187 1.12268 1.05035 0.74014 0.77915 0.74060 1.93479 1.83570 1.73251 1.46319 1.93636 1.81922 1.72033 1.42528 1.30763 1.27171 1.12529 1.00629 1.20891 0.94354 0.94363 0.95959 1.21379 0.94492 1.00465 0.98987 1.21421 1.00309 0.95182 0.92919 1.21739 0.93033 0.97724 0.98996 1.19016 0.94164 0.95553 0.91094 1.20755 0.86662 0.82831 0.85034 1.90675 1.14395 1.56735 1.81121 1.83848 1.39998 1.62106 1.23484 1.21528 0.92188 1.37956 0.92565 0.87609 1.25490 0.96510 0.96160 0.98330 1.69970 1.09357 1.39221 1.29894 0.85579 0.79279 0.79287 0.78637 1.19618 1.20087 1.18628 0.90646 0.91852 0.90392 0.82346 0.86528 0.83659 0.85144 0.84981 0.83314 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.92 37.16 0.37 -1.54 16 2 C -0.60 -9.50 6.05 37.16 0.22 -9.28 16 3 S 2.51 46.37 4.50 -107.50 -0.48 45.88 16 4 O -0.97 -17.83 16.74 -57.54 -0.96 -18.79 16 5 O -0.90 -20.68 14.82 -67.51 -1.00 -21.68 16 6 C -0.63 -11.38 5.61 -39.16 -0.22 -11.60 16 7 C -0.04 -0.56 9.49 -39.65 -0.38 -0.93 16 8 C -0.13 -1.73 10.04 -39.48 -0.40 -2.12 16 9 C -0.08 -1.10 10.03 -39.64 -0.40 -1.50 16 10 C -0.10 -1.69 9.62 -39.16 -0.38 -2.07 16 11 C 0.00 0.08 5.86 -104.98 -0.62 -0.53 16 12 C 0.40 9.68 7.43 34.58 0.26 9.94 16 13 O -0.53 -13.16 8.33 -27.63 -0.23 -13.39 16 14 O -0.19 -5.14 8.99 -21.64 -0.19 -5.34 16 15 C -0.37 -10.25 9.65 30.94 0.30 -9.95 16 16 H 0.11 2.94 6.86 -52.48 -0.36 2.58 16 17 C 0.04 1.10 5.50 -17.52 -0.10 1.00 16 18 N -0.85 -23.32 13.67 55.49 0.76 -22.56 16 19 Si 0.95 20.15 29.55 -169.99 -5.02 15.13 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.16 2.85 5.45 -51.92 -0.28 2.57 16 27 H 0.12 1.45 8.14 -51.92 -0.42 1.03 16 28 H 0.15 1.90 7.21 -52.48 -0.38 1.52 16 29 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.15 2.70 7.61 -52.49 -0.40 2.30 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -33.61 291.24 -7.17 -40.77 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.09 Total: 4.17 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: -1.33 Total: -28.58 kcal Atomic # 7 Polarization: -23.32 SS G_CDS: 0.76 Total: -22.56 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -2.39 Total: -59.20 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 46.37 SS G_CDS: -0.48 Total: 45.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.61 -7.17 -40.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007740012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.213 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds