Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00206 * 2 1 4 4 C 1.50699 * 109.46797 * 270.00095 * 3 2 1 5 5 H 1.07996 * 120.00219 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99534 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00408 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99867 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47045 * 60.00039 * 8 6 4 10 10 H 1.48498 * 109.47199 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47052 * 299.99741 * 8 6 4 12 12 C 1.34783 * 120.00066 * 179.97438 * 2 1 3 13 13 S 1.71201 * 119.99885 * 180.02562 * 12 2 1 14 14 N 1.34772 * 119.99977 * 0.02562 * 12 2 1 15 15 C 1.39886 * 120.00385 * 184.13180 * 14 12 2 16 16 C 1.38909 * 120.06793 * 134.82485 * 15 14 12 17 17 C 1.38094 * 119.95757 * 180.02562 * 16 15 14 18 18 C 1.38283 * 120.08230 * 0.02562 * 17 16 15 19 19 C 1.38382 * 120.13148 * 359.97438 * 18 17 16 20 20 Cl 1.73597 * 119.98018 * 180.02562 * 19 18 17 21 21 C 1.38247 * 120.04473 * 0.02562 * 19 18 17 22 22 H 1.08994 * 109.47224 * 270.00063 * 1 2 3 23 23 H 1.08994 * 109.47038 * 30.00382 * 1 2 3 24 24 H 1.09006 * 109.47037 * 149.99774 * 1 2 3 25 25 H 1.08997 * 109.46778 * 29.99713 * 3 2 1 26 26 H 1.08993 * 109.47301 * 149.99652 * 3 2 1 27 27 H 0.97001 * 120.00637 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00190 * 4.13443 * 14 12 2 29 29 H 1.08002 * 120.02393 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.96145 * 180.02562 * 17 16 15 31 31 H 1.08008 * 119.93855 * 180.02562 * 18 17 16 32 32 H 1.08004 * 120.04361 * 180.27636 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6185 -0.6732 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5935 -4.1346 10 1 4.1793 4.7035 -3.4339 11 1 4.2414 2.3820 -4.1333 12 6 2.1389 -1.1672 0.0005 13 16 3.8509 -1.1672 0.0012 14 7 1.4650 -2.3344 0.0005 15 6 2.1616 -3.5443 0.0883 16 6 1.7217 -4.5396 0.9517 17 6 2.4114 -5.7329 1.0370 18 6 3.5398 -5.9381 0.2644 19 6 3.9812 -4.9490 -0.5969 20 17 5.3978 -5.2110 -1.5655 21 6 3.2948 -3.7523 -0.6865 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1498 1.1384 0.5138 27 1 4.0287 4.4448 -0.8504 28 1 0.4969 -2.3356 -0.0604 29 1 0.8408 -4.3803 1.5559 30 1 2.0692 -6.5069 1.7079 31 1 4.0772 -6.8725 0.3326 32 1 3.6367 -2.9821 -1.3620 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016212913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = 51.179277 kcal Electronic energy + Delta-G solvation = -17409.759221 eV Core-core repulsion = 14522.962585 eV Total energy + Delta-G solvation = -2886.796636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03366 -38.27927 -36.35235 -35.09126 -32.67175 -30.72278 -29.73472 -28.35395 -26.88078 -23.86377 -22.83541 -22.00634 -20.96897 -18.33188 -17.64171 -16.70798 -16.20709 -15.58237 -15.39918 -14.60935 -14.47340 -14.22227 -13.70257 -13.61270 -13.45659 -12.47316 -12.32754 -12.19363 -11.89216 -11.47786 -11.39519 -11.29096 -10.97291 -10.77822 -10.71772 -10.40532 -10.20017 -9.95955 -9.12474 -8.72662 -8.49194 -8.10147 -7.01190 -6.29516 -6.10700 -4.15486 1.07817 1.37256 2.05477 2.29145 2.54842 3.17244 3.29870 3.35583 3.39888 3.65980 3.74522 4.40760 4.84996 5.01382 5.06231 5.12725 5.25217 5.38209 5.40374 5.50101 5.70730 5.80101 6.16053 6.24834 6.35911 6.47243 6.54107 6.93247 7.04623 7.36330 7.42479 7.80903 7.83329 8.06153 8.82452 9.47927 10.97785 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.005036 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.134400 B = 5558.196400 C = 6497.678931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.535 5.535 3 C 0.235 3.765 4 C -0.523 4.523 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.547 3.453 13 S -0.621 6.621 14 N -0.654 5.654 15 C 0.153 3.847 16 C -0.127 4.127 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.031 4.031 20 Cl -0.072 7.072 21 C -0.059 4.059 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.266 0.734 28 H 0.401 0.599 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -16.738 2.594 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.238 5.238 3 C 0.117 3.883 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.189 3.811 13 S -0.485 6.485 14 N -0.285 5.285 15 C 0.059 3.941 16 C -0.149 4.149 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.060 4.060 20 Cl -0.043 7.043 21 C -0.084 4.084 22 H 0.082 0.918 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.684 -16.281 2.579 17.788 hybrid contribution -1.106 0.472 -1.009 1.570 sum -7.790 -15.809 1.570 17.694 Atomic orbital electron populations 1.22020 0.80841 1.03759 1.01993 1.47829 1.06232 1.06627 1.63091 1.20058 0.93974 0.74890 0.99383 1.21054 1.37776 1.06428 0.90976 0.92572 1.24821 0.94883 0.96175 0.97504 1.69902 1.37745 1.14257 1.30839 0.86526 0.78330 0.77969 0.84441 1.20430 1.21087 1.19907 1.22357 0.95763 0.81173 0.81777 1.93208 0.89330 1.92403 1.73578 1.42255 1.09253 1.02748 1.74231 1.17172 0.95221 0.84787 0.96969 1.20969 1.01859 0.94303 0.97753 1.20706 0.95284 0.97086 0.99922 1.21001 0.97265 0.98678 0.96432 1.20592 0.91875 0.95494 0.98062 1.98360 1.39148 1.96470 1.70292 1.21577 0.93314 0.94817 0.98657 0.91816 0.88651 0.92276 0.94181 0.90225 0.92474 0.75890 0.85652 0.85088 0.85261 0.82022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.24 59.85 0.61 1.41 16 2 N -0.53 -10.30 2.86 -185.00 -0.53 -10.83 16 3 C 0.24 5.73 4.92 -5.19 -0.03 5.71 16 4 C -0.52 -14.07 9.39 -34.44 -0.32 -14.40 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 7 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.55 10.63 7.56 -86.92 -0.66 9.97 16 13 S -0.62 -14.92 24.22 -107.50 -2.60 -17.53 16 14 N -0.65 -9.59 5.19 -11.41 -0.06 -9.65 16 15 C 0.15 2.23 5.94 -83.71 -0.50 1.73 16 16 C -0.13 -1.45 9.97 -39.39 -0.39 -1.84 16 17 C -0.11 -1.13 10.04 -39.62 -0.40 -1.53 16 18 C -0.11 -1.32 9.83 -39.51 -0.39 -1.71 16 19 C -0.03 -0.45 6.32 -39.52 -0.25 -0.70 16 20 Cl -0.07 -1.01 28.95 -51.86 -1.50 -2.52 16 21 C -0.06 -0.97 7.64 -39.35 -0.30 -1.27 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 24 H 0.06 0.60 6.31 -51.93 -0.33 0.28 16 25 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.08 2.22 6.58 -51.93 -0.34 1.88 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.40 4.41 6.52 -40.82 -0.27 4.14 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.16 3.13 6.10 -44.19 -0.27 2.86 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -32.49 302.74 -10.41 -42.90 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.28 Total: 2.26 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.72 Total: -0.79 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.15 Total: -45.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -14.92 SS G_CDS: -2.60 Total: -17.53 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.49 -10.41 -42.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016212913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.075 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds