Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34944 * 120.51430 * 2 1 4 4 H 0.97001 * 119.36058 * 0.02562 * 3 2 1 5 5 C 1.34248 * 121.27981 * 180.02562 * 3 2 1 6 6 O 1.21922 * 118.85004 * 179.97438 * 5 3 2 7 7 N 1.33094 * 122.30058 * 359.69576 * 5 3 2 8 8 C 1.32713 * 120.82014 * 0.57029 * 7 5 3 9 9 S 1.76201 * 120.66147 * 179.74295 * 8 7 5 10 10 C 1.80996 * 100.00274 * 359.72034 * 9 8 7 11 11 C 1.53001 * 109.47272 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99691 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99944 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99702 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99775 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47388 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47296 * 120.00184 * 16 14 12 19 19 H 1.48504 * 109.46850 * 239.99682 * 16 14 12 20 20 C 1.38383 * 120.51954 * 180.02562 * 2 1 3 21 21 C 1.47095 * 121.01779 * 359.95436 * 20 2 1 22 22 O 1.21552 * 119.99744 * 353.68186 * 21 20 2 23 23 O 1.34787 * 119.99662 * 173.67810 * 21 20 2 24 24 H 1.08998 * 109.47193 * 264.50364 * 1 2 3 25 25 H 1.09005 * 109.46783 * 24.50248 * 1 2 3 26 26 H 1.09000 * 109.46858 * 144.49672 * 1 2 3 27 27 H 1.08999 * 109.47090 * 300.00279 * 10 9 8 28 28 H 1.09001 * 109.47404 * 60.00079 * 10 9 8 29 29 H 1.08999 * 109.47399 * 300.00222 * 11 10 9 30 30 H 1.08996 * 109.46876 * 60.00250 * 11 10 9 31 31 H 0.97002 * 119.99325 * 179.97438 * 15 14 12 32 32 H 0.96707 * 116.99372 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1922 1.1625 0.0000 4 1 1.7053 2.0015 0.0004 5 6 3.5346 1.1805 -0.0005 6 8 4.1085 2.2561 -0.0010 7 7 4.2607 0.0651 0.0049 8 6 3.6766 -1.1266 -0.0002 9 16 4.6421 -2.6005 0.0003 10 6 6.3054 -1.8868 -0.0001 11 6 7.3429 -3.0113 0.0008 12 6 8.7279 -2.4170 -0.0001 13 1 8.8552 -1.3445 -0.0009 14 6 9.8323 -3.2424 0.0010 15 7 9.6770 -4.5484 0.0024 16 14 11.5488 -2.5057 0.0005 17 1 11.4516 -1.0239 -0.0005 18 1 12.2796 -2.9525 1.2137 19 1 12.2800 -2.9553 -1.2113 20 6 2.2098 -1.1921 -0.0005 21 6 1.5087 -2.4853 -0.0001 22 8 0.2993 -2.5209 0.1166 23 8 2.2075 -3.6306 -0.1292 24 1 -0.3633 -0.0984 1.0229 25 1 -0.3633 0.9352 -0.4262 26 1 -0.3633 -0.8366 -0.5968 27 1 6.4366 -1.2716 -0.8903 28 1 6.4368 -1.2710 0.8896 29 1 7.2116 -3.6261 0.8912 30 1 7.2118 -3.6274 -0.8887 31 1 10.4540 -5.1290 0.0029 32 1 1.7029 -4.4556 -0.1237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037404729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = -88.962122 kcal Electronic energy + Delta-G solvation = -19468.805473 eV Core-core repulsion = 16135.222686 eV Total energy + Delta-G solvation = -3333.582788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78810 -40.08391 -37.31377 -36.23802 -35.25683 -33.72300 -32.17628 -30.91691 -29.19814 -25.73457 -24.84256 -24.12567 -22.18945 -21.16806 -19.30707 -18.68992 -17.65761 -17.19148 -16.66216 -16.53469 -16.52407 -15.55182 -14.89551 -14.49078 -14.07865 -14.01442 -13.79189 -13.60655 -13.52626 -13.09120 -12.13389 -12.03140 -11.83369 -11.69135 -11.60829 -11.18670 -11.01392 -10.73523 -10.59004 -10.24069 -10.11399 -9.67913 -9.63664 -9.10618 -8.93513 -8.43087 -7.74098 -6.07202 -4.10560 0.26685 0.71891 1.50144 2.24469 2.46576 2.49076 3.16004 3.30768 3.38502 3.44701 3.55353 3.68805 4.25515 4.44009 4.50133 4.60979 4.96242 5.13583 5.26242 5.29416 5.46703 5.83969 6.02583 6.09774 6.23071 6.36294 6.72584 7.48875 7.54672 7.57629 7.74480 7.89618 7.96912 8.26508 8.94638 9.53996 11.03751 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.004289 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.217457 B = 6526.378805 C = 7690.213861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.293 3.707 3 N -0.625 5.625 4 H 0.421 0.579 5 C 0.644 3.356 6 O -0.524 6.524 7 N -0.554 5.554 8 C 0.258 3.742 9 S 0.056 5.944 10 C -0.110 4.110 11 C 0.035 3.965 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.287 4.287 21 C 0.553 3.447 22 O -0.525 6.525 23 O -0.487 6.487 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.262 0.738 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.866 4.136 -0.253 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 N -0.262 5.262 4 H 0.260 0.740 5 C 0.342 3.658 6 O -0.399 6.399 7 N -0.298 5.298 8 C -0.013 4.013 9 S 0.299 5.701 10 C -0.258 4.258 11 C -0.005 4.005 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.302 4.302 21 C 0.399 3.601 22 O -0.418 6.418 23 O -0.299 6.299 24 H 0.126 0.874 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -20.743 4.058 -0.220 21.137 hybrid contribution 0.003 1.467 0.020 1.467 sum -20.740 5.525 -0.200 21.465 Atomic orbital electron populations 1.21591 0.85636 1.05897 1.06352 1.21220 0.95638 0.84756 0.81453 1.44406 1.10491 1.09119 1.62185 0.73960 1.18124 0.78643 0.90249 0.78770 1.91033 1.68178 1.28242 1.52411 1.70500 1.33146 0.96182 1.29927 1.26257 0.92672 0.99121 0.83287 1.86441 1.01649 1.00421 1.81595 1.24293 0.91263 1.03970 1.06284 1.18993 0.91316 0.91665 0.98477 1.21133 0.89859 0.93370 1.51336 0.92024 1.24995 0.99424 0.94815 0.94980 1.69971 1.30292 1.02579 1.50351 0.86454 0.83968 0.79539 0.77620 1.19537 1.20917 1.20907 1.19703 0.91890 0.90923 1.27634 1.19616 0.84433 0.83990 0.72091 1.90836 1.14818 1.87772 1.48376 1.84736 1.43846 1.16788 1.84502 0.87414 0.90082 0.85762 0.89276 0.89298 0.95443 0.95422 0.92845 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.93 36.01 0.32 -0.45 16 2 C 0.29 2.77 6.91 -81.17 -0.56 2.21 16 3 N -0.62 -6.66 5.18 -12.69 -0.07 -6.72 16 4 H 0.42 3.01 8.73 -40.82 -0.36 2.66 16 5 C 0.64 10.64 8.53 -88.88 -0.76 9.88 16 6 O -0.52 -10.42 18.00 4.99 0.09 -10.33 16 7 N -0.55 -9.99 9.34 -13.88 -0.13 -10.12 16 8 C 0.26 4.03 7.23 -13.70 -0.10 3.93 16 9 S 0.06 0.92 19.21 -107.50 -2.07 -1.15 16 10 C -0.11 -2.29 4.82 37.16 0.18 -2.11 16 11 C 0.03 0.86 4.98 -27.88 -0.14 0.72 16 12 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 13 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.29 -3.48 6.05 -102.78 -0.62 -4.10 16 21 C 0.55 5.97 8.19 34.32 0.28 6.25 16 22 O -0.53 -5.74 14.25 -19.31 -0.28 -6.01 16 23 O -0.49 -4.65 10.38 -40.73 -0.42 -5.07 16 24 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 26 H 0.12 0.83 5.87 -51.93 -0.30 0.53 16 27 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 28 H 0.09 1.90 8.14 -51.92 -0.42 1.48 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.41 1.89 9.11 45.56 0.42 2.31 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -35.33 299.29 -6.77 -42.10 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -2.32 Total: -1.56 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.81 Total: 3.22 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.54 Total: -42.22 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.61 Total: -21.41 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.07 Total: -1.15 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -35.33 -6.77 -42.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037404729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.862 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds