Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00570 * 2 1 4 4 H 1.48503 * 109.47219 * 239.99756 * 3 2 1 5 5 H 1.48507 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47490 * 119.99494 * 3 2 1 7 7 C 1.37881 * 119.99283 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00437 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47420 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00331 * 180.02562 * 10 9 7 12 12 O 1.21557 * 119.99953 * 359.97438 * 11 10 9 13 13 C 1.47848 * 120.00459 * 180.02562 * 11 10 9 14 14 C 1.39586 * 120.13431 * 304.73112 * 13 11 10 15 15 C 1.38058 * 119.83541 * 179.97438 * 14 13 11 16 16 Cl 1.73601 * 119.93606 * 179.97438 * 15 14 13 17 17 C 1.38492 * 120.11879 * 359.72892 * 15 14 13 18 18 C 1.38318 * 120.28096 * 0.54498 * 17 15 14 19 19 C 1.37983 * 120.15798 * 359.45457 * 18 17 15 20 20 N 1.48020 * 120.06163 * 180.25128 * 19 18 17 21 21 O 1.21795 * 119.99519 * 353.45383 * 20 19 18 22 22 O 1.21802 * 120.00112 * 173.45242 * 20 19 18 23 23 H 0.97009 * 119.99247 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46528 * 59.99813 * 9 7 2 25 25 H 1.08995 * 109.47169 * 300.00349 * 9 7 2 26 26 H 0.97003 * 119.99591 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.07789 * 359.94930 * 14 13 11 28 28 H 1.08000 * 119.85973 * 180.29964 * 17 15 14 29 29 H 1.07995 * 119.92194 * 179.72653 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.2027 -3.6128 0.0027 11 6 1.7534 -4.8834 0.0033 12 8 0.5583 -5.1055 0.0035 13 6 2.7140 -6.0073 0.0049 14 6 3.6929 -6.0939 -0.9864 15 6 4.5871 -7.1457 -0.9787 16 17 5.8052 -7.2563 -2.2107 17 6 4.5174 -8.1099 0.0129 18 6 3.5458 -8.0320 0.9944 19 6 2.6462 -6.9857 0.9978 20 7 1.6109 -6.9014 2.0523 21 8 1.4751 -7.8146 2.8466 22 8 0.8948 -5.9189 2.1256 23 1 -0.4849 0.8402 -0.0004 24 1 0.6238 -2.5574 -0.8880 25 1 0.6245 -2.5563 0.8919 26 1 3.1564 -3.4356 0.0022 27 1 3.7503 -5.3401 -1.7577 28 1 5.2220 -8.9283 0.0177 29 1 3.4939 -8.7895 1.7624 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040418381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -18.264582 kcal Electronic energy + Delta-G solvation = -19458.931401 eV Core-core repulsion = 15990.537488 eV Total energy + Delta-G solvation = -3468.393913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.12548 -40.07896 -38.47891 -37.05719 -36.30747 -34.35517 -32.62876 -32.04725 -31.81134 -27.59317 -26.47861 -24.48314 -22.96965 -22.25415 -20.40627 -19.28846 -18.48108 -18.06591 -17.36462 -16.53044 -16.24328 -15.70184 -15.34661 -14.97430 -14.46684 -14.23989 -13.93311 -13.54369 -13.02416 -12.49891 -12.24187 -12.03265 -11.89807 -11.61290 -11.33666 -11.07561 -10.97140 -10.90430 -10.77791 -10.38269 -9.82712 -9.68434 -9.46507 -9.42850 -8.79369 -8.03070 -6.19597 -4.27403 -0.44981 0.32779 1.18796 1.25374 1.50131 2.62250 3.12459 3.23424 3.28506 3.29763 3.51912 3.97776 4.19211 4.29593 4.37068 4.46449 4.93504 5.05097 5.16608 5.18105 5.29278 5.40555 5.70778 6.42753 7.19741 7.21450 7.46571 7.56109 7.76975 7.91066 8.39978 8.63710 8.87329 9.38501 10.90361 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.004943 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.119522 B = 5662.669666 C = 7049.679742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.693 5.693 11 C 0.535 3.465 12 O -0.508 6.508 13 C -0.036 4.036 14 C -0.086 4.086 15 C 0.005 3.995 16 Cl -0.038 7.038 17 C -0.103 4.103 18 C -0.046 4.046 19 C -0.010 4.010 20 N 0.017 4.983 21 O -0.177 6.177 22 O -0.095 6.095 23 H 0.268 0.732 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.391 0.609 27 H 0.164 0.836 28 H 0.159 0.841 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 -16.058 -2.120 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.341 5.341 11 C 0.316 3.684 12 O -0.384 6.384 13 C -0.042 4.042 14 C -0.105 4.105 15 C -0.022 4.022 16 Cl -0.008 7.008 17 C -0.123 4.123 18 C -0.065 4.065 19 C -0.093 4.093 20 N 0.540 4.460 21 O -0.385 6.385 22 O -0.323 6.323 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.224 0.776 27 H 0.182 0.818 28 H 0.177 0.823 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.745 -16.169 -2.717 20.767 hybrid contribution 0.809 0.939 0.115 1.244 sum 13.554 -15.230 -2.602 20.553 Atomic orbital electron populations 1.69964 1.06078 1.27543 1.48334 1.24930 0.94919 0.99398 0.94586 0.86467 0.79425 0.82298 0.78675 1.20089 1.21007 1.20038 1.21139 0.93198 0.90306 1.53935 0.91936 1.19254 0.88079 0.81175 0.98451 1.46429 1.11475 1.05275 1.70950 1.17752 0.87632 0.82999 0.79979 1.90860 1.14674 1.83949 1.48948 1.20343 0.95364 0.95690 0.92762 1.21313 0.92046 0.98367 0.98803 1.21207 0.92552 0.96127 0.92291 1.98430 1.52687 1.97730 1.51999 1.21163 0.98998 0.99308 0.92781 1.20953 0.91244 0.95677 0.98646 1.21222 0.94943 1.00080 0.93099 1.43449 1.00964 1.00751 1.00791 1.94487 1.75373 1.32016 1.36619 1.94787 1.39837 1.21324 1.76349 0.92269 0.95039 0.94551 0.77578 0.81847 0.82335 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.29 55.43 0.74 -24.84 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 7 C -0.55 -14.45 9.28 -34.44 -0.32 -14.76 15 8 H 0.06 1.53 7.60 -52.48 -0.40 1.13 15 9 C 0.25 6.44 5.43 -5.20 -0.03 6.41 15 10 N -0.69 -14.14 5.53 -62.43 -0.35 -14.48 15 11 C 0.54 10.64 5.85 -12.33 -0.07 10.57 15 12 O -0.51 -12.22 14.76 -18.79 -0.28 -12.50 15 13 C -0.04 -0.55 5.64 -104.97 -0.59 -1.14 15 14 C -0.09 -0.96 9.54 -39.14 -0.37 -1.33 15 15 C 0.01 0.05 6.31 -39.55 -0.25 -0.20 15 16 Cl -0.04 -0.30 28.95 -51.86 -1.50 -1.80 15 17 C -0.10 -0.78 9.82 -39.46 -0.39 -1.17 15 18 C -0.05 -0.45 9.55 -39.65 -0.38 -0.83 15 19 C -0.01 -0.14 6.86 -79.55 -0.55 -0.69 15 20 N 0.02 0.31 4.45 34.16 0.15 0.46 15 21 O -0.18 -2.97 18.47 -29.46 -0.54 -3.52 15 22 O -0.09 -2.03 14.99 -37.09 -0.56 -2.58 15 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 24 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.39 6.75 8.29 -40.82 -0.34 6.41 15 27 H 0.16 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.16 0.68 8.06 -52.49 -0.42 0.25 15 29 H 0.17 1.24 7.62 -52.49 -0.40 0.84 15 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -32.41 289.24 -8.00 -40.42 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.96 Total: 0.46 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.04 Total: -1.44 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.54 Total: -38.86 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.38 Total: -18.60 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.41 -8.00 -40.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040418381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.152 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds