Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00423 * 2 1 4 4 H 1.48494 * 109.46884 * 270.00184 * 3 2 1 5 5 H 1.48502 * 109.46876 * 29.99903 * 3 2 1 6 6 H 1.48504 * 109.47166 * 149.99719 * 3 2 1 7 7 C 1.37878 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00277 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46938 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99628 * 179.97438 * 10 9 7 12 12 O 1.21557 * 119.99889 * 0.02562 * 11 10 9 13 13 C 1.47787 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.39637 * 120.12863 * 0.02562 * 13 11 10 15 15 C 1.37870 * 119.86210 * 180.23375 * 14 13 11 16 16 C 1.38531 * 120.13651 * 359.46974 * 15 14 13 17 17 Cl 1.73600 * 119.87064 * 180.27958 * 16 15 14 18 18 C 1.38493 * 120.26267 * 0.55738 * 16 15 14 19 19 N 1.48013 * 119.93988 * 179.72820 * 18 16 15 20 20 O 1.21792 * 120.00559 * 179.97438 * 19 18 16 21 21 O 1.21806 * 119.99347 * 359.97050 * 19 18 16 22 22 C 1.37922 * 120.12794 * 359.69832 * 18 16 15 23 23 H 0.97005 * 119.99740 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46913 * 60.00123 * 9 7 2 25 25 H 1.08995 * 109.46902 * 299.99795 * 9 7 2 26 26 H 0.96994 * 120.00401 * 0.02562 * 10 9 7 27 27 H 1.08002 * 120.06546 * 359.95205 * 14 13 11 28 28 H 1.08004 * 119.92919 * 179.74387 * 15 14 13 29 29 H 1.08000 * 120.06240 * 180.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5584 -5.1055 0.0011 13 6 2.7139 -6.0068 0.0016 14 6 4.0873 -5.7548 0.0022 15 6 4.9783 -6.8069 -0.0022 16 6 4.5135 -8.1119 0.0040 17 17 5.6416 -9.4314 0.0058 18 6 3.1525 -8.3681 0.0030 19 7 2.6638 -9.7652 0.0035 20 8 1.4672 -9.9919 0.0031 21 8 3.4586 -10.6883 0.0044 22 6 2.2515 -7.3238 0.0020 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.1565 -3.4356 0.0009 27 1 4.4508 -4.7378 0.0014 28 1 6.0408 -6.6132 -0.0059 29 1 1.1904 -7.5249 0.0016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040419055.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = -14.742709 kcal Electronic energy + Delta-G solvation = -18920.559058 eV Core-core repulsion = 15452.317865 eV Total energy + Delta-G solvation = -3468.241193 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.34877 -40.32044 -38.50674 -37.08571 -36.60574 -34.61837 -32.90424 -32.18887 -31.59622 -27.67443 -26.69012 -24.51401 -23.02576 -22.50279 -20.63843 -19.42692 -18.78020 -17.72149 -17.47767 -17.21335 -16.34955 -15.91142 -15.08834 -14.92276 -14.81241 -14.46070 -13.98107 -13.36085 -13.17944 -12.45031 -12.30927 -12.30401 -12.07325 -11.83427 -11.52515 -11.21866 -11.13535 -11.01695 -10.68992 -10.47699 -10.12820 -9.66285 -9.55894 -9.49212 -8.92843 -8.19476 -6.31333 -4.39970 -0.52974 0.18169 1.02302 1.02578 1.40723 2.43761 3.14573 3.20528 3.22945 3.45564 3.50760 3.80056 4.18911 4.27473 4.34650 4.38001 4.63884 5.03627 5.05330 5.17939 5.40030 5.52945 5.73700 6.15937 7.03583 7.05691 7.29367 7.43563 7.48851 7.77792 8.25622 8.49364 8.73039 9.26897 10.78576 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.033541 B = 0.003442 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.608122 B = 8132.144511 C = 8951.606985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.697 5.697 11 C 0.538 3.462 12 O -0.536 6.536 13 C -0.112 4.112 14 C -0.028 4.028 15 C -0.116 4.116 16 C 0.025 3.975 17 Cl -0.006 7.006 18 C -0.049 4.049 19 N 0.029 4.971 20 O -0.156 6.156 21 O -0.140 6.140 22 C 0.008 3.992 23 H 0.268 0.732 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.391 0.609 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 -13.610 0.002 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.345 5.345 11 C 0.322 3.678 12 O -0.415 6.415 13 C -0.117 4.117 14 C -0.047 4.047 15 C -0.135 4.135 16 C -0.004 4.004 17 Cl 0.023 6.977 18 C -0.133 4.133 19 N 0.549 4.451 20 O -0.370 6.370 21 O -0.359 6.359 22 C -0.012 4.012 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.225 0.775 27 H 0.177 0.823 28 H 0.180 0.820 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.076 -13.018 0.006 17.756 hybrid contribution 0.882 0.574 -0.006 1.052 sum 12.958 -12.444 0.000 17.965 Atomic orbital electron populations 1.69962 1.06130 1.27598 1.48186 1.24952 0.94952 0.99555 0.94454 0.86382 0.79578 0.82457 0.78309 1.20372 1.20890 1.19719 1.21151 0.93239 0.90217 1.54149 0.91797 1.19268 0.88140 0.81464 0.98335 1.46465 1.11525 1.05677 1.70795 1.17861 0.87673 0.83044 0.79227 1.90809 1.15587 1.84505 1.50563 1.20455 0.94405 0.93925 1.02881 1.21891 0.91722 1.00742 0.90359 1.21144 1.02104 0.88570 1.01644 1.20980 0.88710 0.92083 0.98583 1.98471 1.58835 1.44803 1.95542 1.20746 0.92794 0.83015 1.16795 1.43365 1.01016 1.02553 0.98125 1.94587 0.98765 1.90147 1.53529 1.94600 1.52409 1.36518 1.52368 1.21157 1.01887 0.89272 0.88887 0.92228 0.94914 0.94899 0.77511 0.82323 0.81966 0.80788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.29 55.43 0.74 -23.94 15 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.91 19.66 29.54 -169.99 -5.02 14.64 15 4 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.55 -13.75 9.28 -34.44 -0.32 -14.07 15 8 H 0.06 1.47 7.60 -52.48 -0.40 1.07 15 9 C 0.25 6.01 5.43 -5.19 -0.03 5.98 15 10 N -0.70 -12.80 5.50 -62.45 -0.34 -13.14 15 11 C 0.54 9.57 7.77 -12.35 -0.10 9.48 15 12 O -0.54 -11.77 16.35 5.32 0.09 -11.69 15 13 C -0.11 -1.46 5.87 -104.97 -0.62 -2.08 15 14 C -0.03 -0.26 9.54 -39.19 -0.37 -0.63 15 15 C -0.12 -0.92 9.81 -39.61 -0.39 -1.31 15 16 C 0.03 0.26 6.33 -39.38 -0.25 0.01 15 17 Cl -0.01 -0.06 25.91 -51.86 -1.34 -1.40 15 18 C -0.05 -0.62 6.85 -79.97 -0.55 -1.17 15 19 N 0.03 0.40 4.45 33.95 0.15 0.55 15 20 O -0.16 -2.36 18.44 -29.46 -0.54 -2.90 15 21 O -0.14 -1.96 16.00 -29.46 -0.47 -2.43 15 22 C 0.01 0.10 9.10 -39.19 -0.36 -0.25 15 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.39 5.73 6.35 -40.82 -0.26 5.47 15 27 H 0.16 1.08 6.40 -52.49 -0.34 0.75 15 28 H 0.16 0.77 8.06 -52.48 -0.42 0.35 15 29 H 0.17 2.42 7.19 -52.49 -0.38 2.04 15 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -30.49 286.42 -7.28 -37.77 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -1.77 Total: 0.64 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.07 Total: -2.43 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.54 Total: -36.53 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.93 Total: -17.01 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.34 Total: -1.40 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.49 -7.28 -37.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040419055.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.029 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds