Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21559 * 120.00081 * 359.97438 * 11 10 9 13 13 C 1.47766 * 119.99701 * 180.02562 * 11 10 9 14 14 C 1.39626 * 120.15661 * 359.72327 * 13 11 10 15 15 C 1.37901 * 119.86568 * 179.77086 * 14 13 11 16 16 N 1.48012 * 119.91152 * 180.25186 * 15 14 13 17 17 O 1.21799 * 120.00548 * 180.25359 * 16 15 14 18 18 O 1.21803 * 119.99763 * 0.25701 * 16 15 14 19 19 C 1.38426 * 120.18264 * 0.50830 * 15 14 13 20 20 C 1.38272 * 120.31228 * 359.74148 * 19 15 14 21 21 C 1.38148 * 120.13430 * 0.02562 * 20 19 15 22 22 Cl 1.73603 * 120.09419 * 179.97438 * 21 20 19 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 26 26 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 27 27 H 1.08002 * 120.06848 * 359.97438 * 14 13 11 28 28 H 1.07991 * 119.84613 * 179.72505 * 19 15 14 29 29 H 1.08002 * 119.92855 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5586 -5.1055 0.0020 13 6 2.7140 -6.0065 0.0016 14 6 4.0874 -5.7551 -0.0042 15 6 4.9783 -6.8077 0.0012 16 7 6.4344 -6.5424 0.0006 17 8 7.2227 -7.4708 0.0007 18 8 6.8444 -5.3954 0.0002 19 6 4.5144 -8.1120 0.0017 20 6 3.1559 -8.3695 0.0022 21 6 2.2520 -7.3249 0.0017 22 17 0.5465 -7.6494 0.0017 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 4.4514 -4.7383 -0.0096 28 1 5.2169 -8.9322 0.0014 29 1 2.8009 -9.3895 0.0022 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040419056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -13.804054 kcal Electronic energy + Delta-G solvation = -19130.198863 eV Core-core repulsion = 15661.998373 eV Total energy + Delta-G solvation = -3468.200490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.39182 -40.29580 -38.34192 -36.78671 -36.74808 -34.48554 -32.75401 -32.08405 -31.77085 -27.50655 -26.68430 -24.60518 -23.16949 -22.22650 -20.52532 -19.42944 -18.86250 -17.72773 -17.61524 -17.02070 -16.31443 -15.78090 -15.04981 -14.98351 -14.87655 -14.32881 -13.67643 -13.38811 -12.98594 -12.50881 -12.08628 -12.05331 -11.95090 -11.77750 -11.48913 -11.30599 -11.30411 -10.98049 -10.97395 -10.36293 -9.84338 -9.57443 -9.48386 -9.29012 -8.85597 -8.10737 -6.25142 -4.32875 -0.53649 0.21554 0.95673 1.08972 1.71792 2.49135 3.20169 3.27677 3.30588 3.49366 3.52976 3.90379 4.05765 4.27417 4.30089 4.46382 4.90166 4.99512 5.08793 5.11848 5.18854 5.50359 5.63866 6.13273 7.10530 7.13291 7.36046 7.42906 7.52248 7.84271 8.33767 8.56891 8.80664 9.34038 10.84862 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.005019 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.030151 B = 5577.656838 C = 7407.542042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.698 5.698 11 C 0.535 3.465 12 O -0.519 6.519 13 C -0.113 4.113 14 C -0.014 4.014 15 C -0.052 4.052 16 N 0.029 4.971 17 O -0.159 6.159 18 O -0.149 6.149 19 C -0.030 4.030 20 C -0.119 4.119 21 C 0.051 3.949 22 Cl 0.003 6.997 23 H 0.266 0.734 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.390 0.610 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -17.191 -0.006 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.130 3.870 10 N -0.347 5.347 11 C 0.317 3.683 12 O -0.397 6.397 13 C -0.118 4.118 14 C -0.034 4.034 15 C -0.135 4.135 16 N 0.550 4.450 17 O -0.375 6.375 18 O -0.367 6.367 19 C -0.050 4.050 20 C -0.139 4.139 21 C 0.023 3.977 22 Cl 0.033 6.967 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.225 0.775 27 H 0.184 0.816 28 H 0.182 0.818 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.745 -17.325 -0.006 18.253 hybrid contribution 1.175 1.060 -0.001 1.582 sum 6.921 -16.266 -0.008 17.677 Atomic orbital electron populations 1.69976 1.06128 1.27395 1.48624 1.24938 0.94928 0.99533 0.94461 0.86342 0.79956 0.82750 0.77820 1.19448 1.20733 1.20726 1.21232 0.93413 0.90233 1.53674 0.91644 1.19245 0.88072 0.81465 0.98223 1.46515 1.11562 1.05716 1.70878 1.17767 0.87711 0.82951 0.79823 1.90868 1.14910 1.84105 1.49812 1.20246 0.92943 0.94541 1.04075 1.21256 0.90933 1.00324 0.90923 1.21031 0.80451 0.96178 1.15824 1.43506 1.03103 1.00740 0.97655 1.94530 1.52035 1.37461 1.53461 1.94601 1.82436 1.06750 1.52899 1.21107 0.96354 0.95016 0.92475 1.21098 0.90664 0.99892 1.02225 1.21525 0.88912 0.93087 0.94218 1.98475 1.08209 1.95003 1.95016 0.92379 0.94960 0.94948 0.77549 0.81575 0.81810 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.29 55.43 0.74 -24.54 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 15 8 H 0.07 1.60 7.60 -52.49 -0.40 1.21 15 9 C 0.25 6.26 5.43 -5.19 -0.03 6.23 15 10 N -0.70 -13.75 5.50 -62.45 -0.34 -14.09 15 11 C 0.53 9.89 7.76 -12.37 -0.10 9.80 15 12 O -0.52 -11.17 13.97 5.31 0.07 -11.10 15 13 C -0.11 -1.58 5.88 -104.94 -0.62 -2.20 15 14 C -0.01 -0.18 9.04 -39.19 -0.35 -0.53 15 15 C -0.05 -0.58 6.84 -80.00 -0.55 -1.13 15 16 N 0.03 0.38 4.45 33.93 0.15 0.53 15 17 O -0.16 -2.05 18.44 -29.46 -0.54 -2.59 15 18 O -0.15 -2.12 18.44 -29.46 -0.54 -2.67 15 19 C -0.03 -0.26 9.55 -39.50 -0.38 -0.63 15 20 C -0.12 -1.00 9.82 -39.60 -0.39 -1.39 15 21 C 0.05 0.62 6.35 -39.07 -0.25 0.37 15 22 Cl 0.00 0.04 26.02 -51.86 -1.35 -1.31 15 23 H 0.27 7.14 8.31 -40.82 -0.34 6.81 15 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.39 6.59 6.35 -40.82 -0.26 6.33 15 27 H 0.17 1.93 5.95 -52.49 -0.31 1.62 15 28 H 0.16 0.98 7.60 -52.49 -0.40 0.58 15 29 H 0.16 0.82 8.06 -52.49 -0.42 0.40 15 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -30.60 286.53 -7.37 -37.96 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -1.77 Total: 0.50 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.07 Total: -2.42 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.54 Total: -38.10 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.01 Total: -16.36 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.35 Total: -1.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.60 -7.37 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040419056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.161 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds