Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.39003 * 119.99882 * 180.27697 * 13 11 10 15 15 N 1.28926 * 124.93124 * 359.41550 * 14 13 11 16 16 C 1.33703 * 117.63526 * 179.82344 * 15 14 13 17 17 C 1.33686 * 113.24756 * 0.44748 * 16 15 14 18 18 S 1.70733 * 124.92839 * 179.72083 * 14 13 11 19 19 C 1.51748 * 110.90198 * 179.80080 * 17 16 15 20 20 C 1.54306 * 104.79836 * 17.24988 * 19 17 16 21 21 C 1.52634 * 137.05051 * 180.08442 * 16 15 14 22 22 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 24 24 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 25 25 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 26 26 H 1.09001 * 110.37893 * 136.07803 * 19 17 16 27 27 H 1.08998 * 110.37415 * 258.31265 * 19 17 16 28 28 H 1.08999 * 110.97384 * 91.91489 * 20 19 17 29 29 H 1.09001 * 110.97858 * 215.65492 * 20 19 17 30 30 H 1.08996 * 110.31991 * 44.06277 * 21 16 15 31 31 H 1.09001 * 110.31956 * 281.86599 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3569 -7.6449 -0.0034 15 7 1.1082 -7.9656 0.0017 16 6 0.8021 -9.2671 -0.0082 17 6 1.8770 -10.0619 -0.0128 18 16 3.3250 -9.0512 -0.0101 19 6 1.4695 -11.5236 -0.0191 20 6 -0.0092 -11.5186 -0.4601 21 6 -0.4660 -10.1166 -0.0093 22 1 -0.4849 0.8400 -0.0004 23 1 3.1246 -3.7313 0.8905 24 1 3.1246 -3.7313 -0.8894 25 1 3.8011 -6.1834 0.0015 26 1 2.0758 -12.0837 -0.7310 27 1 1.5679 -11.9493 0.9795 28 1 -0.0942 -11.6278 -1.5413 29 1 -0.5725 -12.2973 0.0542 30 1 -1.1928 -9.7108 -0.7130 31 1 -0.8924 -10.1614 0.9928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041784986.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = 23.882282 kcal Electronic energy + Delta-G solvation = -16746.130953 eV Core-core repulsion = 13860.194336 eV Total energy + Delta-G solvation = -2885.936616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58374 -39.23976 -36.25284 -34.12931 -32.46412 -29.75748 -28.58364 -27.43145 -25.54867 -24.12794 -21.56540 -21.17919 -18.86480 -18.51955 -17.58884 -16.68966 -16.15323 -16.04621 -15.37188 -14.83465 -14.19814 -14.13959 -13.93818 -13.46344 -13.27854 -12.98856 -12.66699 -12.40399 -12.13255 -11.44901 -11.40630 -11.29165 -11.09097 -11.06016 -10.80942 -10.29148 -9.98421 -9.87061 -9.21822 -9.09854 -9.04941 -8.30387 -8.08199 -6.55697 -6.25029 -3.96844 0.75951 0.84500 1.60024 2.65040 2.73541 3.18490 3.20456 3.20926 3.28061 3.43379 3.98719 4.16241 4.34777 4.66386 4.72756 4.98329 5.10281 5.23879 5.37648 5.44729 5.50806 5.57025 5.64472 5.75701 5.75990 5.89811 5.94468 6.01853 6.32997 7.07000 7.56240 7.88998 8.31493 8.38889 9.20105 10.82379 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.048024 B = 0.003203 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.897371 B = 8739.887269 C = 9283.990661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.054 6.054 10 C -0.150 4.150 11 C 0.522 3.478 12 O -0.444 6.444 13 N -0.640 5.640 14 C 0.296 3.704 15 N -0.471 5.471 16 C 0.083 3.917 17 C -0.280 4.280 18 S 0.119 5.881 19 C -0.029 4.029 20 C -0.115 4.115 21 C -0.042 4.042 22 H 0.269 0.731 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.421 0.579 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -22.521 -0.177 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.173 5.827 10 C -0.301 4.301 11 C 0.305 3.695 12 O -0.309 6.309 13 N -0.294 5.294 14 C -0.075 4.075 15 N -0.192 5.192 16 C -0.048 4.048 17 C -0.402 4.402 18 S 0.372 5.628 19 C -0.069 4.069 20 C -0.154 4.154 21 C -0.082 4.082 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.258 0.742 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.762 -22.330 -0.157 23.062 hybrid contribution 1.765 1.321 0.016 2.204 sum 7.527 -21.009 -0.142 22.317 Atomic orbital electron populations 1.70014 1.05974 1.27576 1.46602 1.25005 0.95045 0.99084 0.94438 0.86143 0.79388 0.81446 0.78374 1.20235 1.20721 1.19657 1.22854 0.94945 0.91472 1.59284 0.90770 1.85506 1.04201 0.96265 1.96754 1.23552 1.07171 0.93901 1.05481 1.20765 0.86812 0.85759 0.76116 1.90831 1.14494 1.84238 1.41386 1.43468 1.11180 1.00882 1.73838 1.23312 0.90957 0.91349 1.01913 1.65606 1.15574 1.17880 1.20105 1.21448 0.97346 0.85941 1.00032 1.26620 0.94060 1.02502 1.16972 1.83502 1.08296 0.97123 1.73888 1.20566 0.95949 0.88360 1.02066 1.22349 0.94780 0.96312 1.01977 1.20890 0.92562 0.91608 1.03136 0.92094 0.88619 0.88620 0.74193 0.90737 0.90122 0.90363 0.89552 0.89714 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.05 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 11 C 0.52 10.12 7.81 -10.98 -0.09 10.03 16 12 O -0.44 -10.66 14.50 5.55 0.08 -10.58 16 13 N -0.64 -9.45 5.40 -13.26 -0.07 -9.52 16 14 C 0.30 4.59 8.00 -87.91 -0.70 3.88 16 15 N -0.47 -8.55 8.64 -10.45 -0.09 -8.64 16 16 C 0.08 1.20 7.69 -82.41 -0.63 0.57 16 17 C -0.28 -3.31 7.41 -35.39 -0.26 -3.57 16 18 S 0.12 1.34 23.22 -107.50 -2.50 -1.15 16 19 C -0.03 -0.23 6.80 -26.68 -0.18 -0.41 16 20 C -0.11 -0.81 7.13 -25.42 -0.18 -0.99 16 21 C -0.04 -0.44 6.81 -26.29 -0.18 -0.62 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 23 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 24 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 25 H 0.42 4.28 8.82 -40.82 -0.36 3.92 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -36.35 299.30 -9.66 -46.02 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -3.29 Total: -1.19 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -1.81 Total: -6.68 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.57 Total: -43.47 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -4.71 Total: -4.81 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.35 -9.66 -46.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041784986.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.897 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds