Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46892 * 109.47492 * 2 1 4 4 C 1.46901 * 111.00334 * 199.51474 * 3 2 1 5 5 C 1.50703 * 109.46805 * 66.04605 * 4 3 2 6 6 H 1.07996 * 120.00170 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00155 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47240 * 89.99352 * 9 7 5 11 11 H 1.48495 * 109.47195 * 209.99892 * 9 7 5 12 12 H 1.48500 * 109.46607 * 329.99374 * 9 7 5 13 13 C 1.39055 * 111.00233 * 75.56223 * 3 2 1 14 14 N 1.32402 * 119.71050 * 58.88250 * 13 3 2 15 15 C 1.31949 * 121.63247 * 180.02562 * 14 13 3 16 16 C 1.38057 * 120.87358 * 359.97263 * 15 14 13 17 17 C 1.38837 * 119.33610 * 0.27803 * 16 15 14 18 18 C 1.38409 * 118.49546 * 359.48473 * 17 16 15 19 19 Br 1.89102 * 120.45942 * 180.26193 * 18 17 16 20 20 H 1.08998 * 109.47325 * 184.86895 * 1 2 3 21 21 H 1.09004 * 109.47298 * 304.87137 * 1 2 3 22 22 H 1.09004 * 109.46895 * 64.86300 * 1 2 3 23 23 H 1.09003 * 109.47482 * 239.99423 * 2 1 3 24 24 H 1.09006 * 109.47031 * 119.99831 * 2 1 3 25 25 H 1.08998 * 109.47179 * 186.04310 * 4 3 2 26 26 H 1.09000 * 109.47010 * 306.04881 * 4 3 2 27 27 H 0.96989 * 120.00402 * 179.97438 * 8 7 5 28 28 H 1.08002 * 119.56387 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.32783 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.75448 * 179.74659 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4139 1.4503 -0.4581 5 6 3.4859 1.0446 -1.9077 6 1 2.5860 0.7656 -2.4357 7 6 4.7007 1.0286 -2.5596 8 7 5.7966 1.3678 -1.9166 9 14 4.7898 0.5263 -4.3567 10 1 4.6259 1.7270 -5.2149 11 1 6.1073 -0.1017 -4.6304 12 1 3.7070 -0.4457 -4.6532 13 6 1.8807 1.9627 1.2572 14 7 2.4789 1.4121 2.3022 15 6 2.3722 1.9281 3.5119 16 6 1.6276 3.0696 3.7321 17 6 0.9797 3.6755 2.6641 18 6 1.1139 3.1146 1.4059 19 35 0.2615 3.8985 -0.0890 20 1 -0.3634 -1.0239 0.0872 21 1 -0.3634 0.5876 0.8432 22 1 -0.3633 0.4366 -0.9304 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.7854 2.4690 -0.3471 26 1 4.0248 0.7736 0.1393 27 1 6.6512 1.3562 -2.3750 28 1 2.8741 1.4511 4.3408 29 1 1.5466 3.4846 4.7258 30 1 0.3878 4.5669 2.8110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = 47.956046 kcal Electronic energy + Delta-G solvation = -15007.400858 eV Core-core repulsion = 12463.283895 eV Total energy + Delta-G solvation = -2544.116963 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.15531 -36.57019 -32.77500 -32.68080 -31.16024 -29.89647 -28.79449 -26.31144 -23.48237 -22.58056 -22.43393 -20.28916 -16.96684 -16.28109 -16.13342 -15.30574 -15.03149 -14.19049 -14.05293 -13.30630 -13.17201 -12.84579 -12.44733 -12.16559 -11.86289 -11.26880 -11.03756 -10.89908 -10.75888 -10.54557 -10.25108 -10.04917 -9.93888 -9.45665 -9.31958 -9.07830 -8.45873 -8.36081 -7.59021 -6.02198 -4.03784 1.17817 1.38018 2.04315 3.33828 3.39506 3.42906 3.90342 4.29160 4.51482 4.85611 4.91489 5.13443 5.33370 5.45346 5.51003 5.79062 5.95904 6.00301 6.09387 6.17425 6.38749 6.60099 6.71572 6.80885 7.24050 7.37204 7.79298 7.95848 8.10784 8.20752 8.50160 9.02328 9.59426 11.08771 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.007242 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.575892 B = 3865.533854 C = 4359.767995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 N -0.486 5.486 4 C 0.206 3.794 5 C -0.507 4.507 6 H 0.067 0.933 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.350 3.650 14 N -0.502 5.502 15 C 0.119 3.881 16 C -0.192 4.192 17 C -0.051 4.051 18 C -0.125 4.125 19 Br -0.024 7.024 20 H 0.049 0.951 21 H 0.039 0.961 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.038 0.962 25 H 0.027 0.973 26 H 0.007 0.993 27 H 0.262 0.738 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 4.268 9.470 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 N -0.210 5.210 4 C 0.083 3.917 5 C -0.545 4.545 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.119 3.881 14 N -0.215 5.215 15 C -0.040 4.040 16 C -0.213 4.213 17 C -0.079 4.079 18 C -0.209 4.209 19 Br 0.061 6.939 20 H 0.068 0.932 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.112 0.888 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.501 4.068 8.388 14.805 hybrid contribution 0.459 0.022 0.159 0.487 sum -11.042 4.090 8.547 14.550 Atomic orbital electron populations 1.21772 0.96393 1.00109 1.01736 1.22048 0.94172 0.88201 1.02353 1.60577 1.26639 1.18889 1.14909 1.19740 0.79022 0.97276 0.95687 1.21088 0.93482 1.45011 0.94967 0.91497 1.24969 0.95540 0.95524 0.98419 1.69968 0.98473 1.48462 1.36646 0.86475 0.77262 0.78724 0.84826 1.20624 1.21347 1.19760 1.20176 0.87985 0.89793 0.90114 1.68116 1.20068 1.33407 0.99864 1.22710 0.94415 0.92592 0.94281 1.22009 1.01118 0.98432 0.99717 1.21469 0.96936 0.98734 0.90736 1.22755 1.04446 0.99702 0.93973 1.96647 1.76797 1.80082 1.40366 0.93169 0.94223 0.91949 0.88755 0.94347 0.95491 0.97465 0.92887 0.82851 0.84549 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 10.07 37.16 0.37 -2.01 16 2 C 0.06 1.20 5.49 -3.83 -0.02 1.17 16 3 N -0.49 -10.79 3.69 -174.53 -0.64 -11.43 16 4 C 0.21 5.48 4.53 -4.97 -0.02 5.46 16 5 C -0.51 -14.18 8.24 -34.44 -0.28 -14.46 16 6 H 0.07 1.84 7.31 -52.49 -0.38 1.45 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.35 7.03 4.55 -154.95 -0.71 6.32 16 14 N -0.50 -9.67 9.44 -12.41 -0.12 -9.79 16 15 C 0.12 1.75 11.17 -17.57 -0.20 1.56 16 16 C -0.19 -2.38 10.10 -39.43 -0.40 -2.78 16 17 C -0.05 -0.70 9.93 -39.30 -0.39 -1.09 16 18 C -0.13 -2.18 6.27 -39.17 -0.25 -2.42 16 19 Br -0.02 -0.40 33.12 -68.01 -2.25 -2.65 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.04 0.66 7.60 -51.93 -0.39 0.26 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.09 2.04 6.58 -51.93 -0.34 1.70 16 24 H 0.04 0.78 7.41 -51.93 -0.38 0.40 16 25 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 26 H 0.01 0.22 8.12 -51.93 -0.42 -0.21 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -30.83 280.03 -8.66 -39.49 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -3.59 Total: -3.69 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.99 Total: -6.73 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.02 Total: -47.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.25 Total: -2.65 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.83 -8.66 -39.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.442 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds