Wall clock time and date at job start Tue Mar 31 2020 05:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46892 * 109.47492 * 2 1 4 4 C 1.46901 * 111.00334 * 199.51474 * 3 2 1 5 5 C 1.50703 * 109.46805 * 66.04605 * 4 3 2 6 6 H 1.07996 * 120.00170 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00155 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47240 * 89.99352 * 9 7 5 11 11 H 1.48495 * 109.47195 * 209.99892 * 9 7 5 12 12 H 1.48500 * 109.46607 * 329.99374 * 9 7 5 13 13 C 1.39055 * 111.00233 * 75.56223 * 3 2 1 14 14 N 1.32402 * 119.71050 * 58.88250 * 13 3 2 15 15 C 1.31949 * 121.63247 * 180.02562 * 14 13 3 16 16 C 1.38057 * 120.87358 * 359.97263 * 15 14 13 17 17 C 1.38837 * 119.33610 * 0.27803 * 16 15 14 18 18 C 1.38409 * 118.49546 * 359.48473 * 17 16 15 19 19 Br 1.89102 * 120.45942 * 180.26193 * 18 17 16 20 20 H 1.08998 * 109.47325 * 184.86895 * 1 2 3 21 21 H 1.09004 * 109.47298 * 304.87137 * 1 2 3 22 22 H 1.09004 * 109.46895 * 64.86300 * 1 2 3 23 23 H 1.09003 * 109.47482 * 239.99423 * 2 1 3 24 24 H 1.09006 * 109.47031 * 119.99831 * 2 1 3 25 25 H 1.08998 * 109.47179 * 186.04310 * 4 3 2 26 26 H 1.09000 * 109.47010 * 306.04881 * 4 3 2 27 27 H 0.96989 * 120.00402 * 179.97438 * 8 7 5 28 28 H 1.08002 * 119.56387 * 179.97438 * 15 14 13 29 29 H 1.07998 * 120.32783 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.75448 * 179.74659 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4139 1.4503 -0.4581 5 6 3.4859 1.0446 -1.9077 6 1 2.5860 0.7656 -2.4357 7 6 4.7007 1.0286 -2.5596 8 7 5.7966 1.3678 -1.9166 9 14 4.7898 0.5263 -4.3567 10 1 4.6259 1.7270 -5.2149 11 1 6.1073 -0.1017 -4.6304 12 1 3.7070 -0.4457 -4.6532 13 6 1.8807 1.9627 1.2572 14 7 2.4789 1.4121 2.3022 15 6 2.3722 1.9281 3.5119 16 6 1.6276 3.0696 3.7321 17 6 0.9797 3.6755 2.6641 18 6 1.1139 3.1146 1.4059 19 35 0.2615 3.8985 -0.0890 20 1 -0.3634 -1.0239 0.0872 21 1 -0.3634 0.5876 0.8432 22 1 -0.3633 0.4366 -0.9304 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.7854 2.4690 -0.3471 26 1 4.0248 0.7736 0.1393 27 1 6.6512 1.3562 -2.3750 28 1 2.8741 1.4511 4.3408 29 1 1.5466 3.4846 4.7258 30 1 0.3878 4.5669 2.8110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:12 Heat of formation + Delta-G solvation = 28.659450 kcal Electronic energy + Delta-G solvation = -15008.237621 eV Core-core repulsion = 12463.283895 eV Total energy + Delta-G solvation = -2544.953726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48150 -38.15018 -34.80506 -34.02901 -32.47499 -31.48223 -30.25627 -28.15899 -24.87724 -24.37907 -23.82335 -21.83685 -18.72658 -17.85083 -17.58826 -16.95250 -16.47103 -15.99352 -15.41186 -14.79517 -14.56935 -14.26399 -14.13430 -14.05977 -13.14392 -12.91462 -12.73284 -12.60846 -12.41826 -12.19491 -11.99993 -11.83496 -11.47206 -11.20606 -10.64548 -10.60161 -10.45287 -9.66447 -9.35286 -8.21147 -6.31446 -0.06117 0.19901 0.75844 1.41556 1.43613 1.54621 2.39283 2.67055 2.90771 3.12475 3.62368 3.89337 4.04131 4.12510 4.29830 4.45143 4.51342 4.71092 4.87998 4.95371 5.01759 5.04071 5.13339 5.21977 5.39509 5.50700 5.67383 6.02328 6.11260 6.63994 6.81936 6.94760 7.37338 8.90702 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.007242 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.575892 B = 3865.533854 C = 4359.767995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.060 3.940 3 N -0.486 5.486 4 C 0.232 3.768 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.972 3.028 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.261 1.261 13 C 0.308 3.692 14 N -0.541 5.541 15 C 0.107 3.893 16 C -0.163 4.163 17 C -0.046 4.046 18 C -0.139 4.139 19 Br -0.027 7.027 20 H 0.076 0.924 21 H 0.040 0.960 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.028 0.972 25 H -0.011 1.011 26 H -0.032 1.032 27 H 0.264 0.736 28 H 0.186 0.814 29 H 0.189 0.811 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 4.798 10.449 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 N -0.209 5.209 4 C 0.107 3.893 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.796 3.204 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.185 1.185 13 C 0.079 3.921 14 N -0.254 5.254 15 C -0.052 4.052 16 C -0.183 4.183 17 C -0.074 4.074 18 C -0.223 4.223 19 Br 0.058 6.942 20 H 0.095 0.905 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.007 0.993 26 H -0.014 1.014 27 H 0.073 0.927 28 H 0.203 0.797 29 H 0.206 0.794 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.005 4.599 9.382 16.682 hybrid contribution 0.908 -0.097 0.063 0.915 sum -12.097 4.502 9.445 15.994 Atomic orbital electron populations 1.21627 0.93300 1.01798 1.01632 1.22035 0.96578 0.87316 1.00732 1.60415 1.23273 1.19758 1.17454 1.19169 0.81505 0.93706 0.94890 1.21378 0.93757 1.44895 0.95704 0.91285 1.25930 0.95023 0.95265 1.03332 1.70109 0.99129 1.49522 1.38737 0.85345 0.77641 0.78675 0.78754 1.19889 1.20803 1.18476 1.20117 0.90903 0.91576 0.89546 1.67969 1.21117 1.34980 1.01381 1.23374 0.94770 0.93610 0.93426 1.22551 0.97824 0.96404 1.01517 1.21966 0.96668 0.99420 0.89368 1.22894 1.04686 0.99173 0.95505 1.96619 1.76593 1.79794 1.41232 0.90542 0.94057 0.92137 0.90917 0.95316 0.99254 1.01384 0.92696 0.79741 0.79392 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 10.07 71.98 0.72 -3.43 16 2 C 0.06 2.52 5.49 86.30 0.47 2.99 16 3 N -0.49 -22.38 3.69 -706.09 -2.60 -24.98 16 4 C 0.23 13.10 4.53 85.56 0.39 13.48 16 5 C -0.52 -30.09 8.24 25.60 0.21 -29.87 16 6 H 0.07 3.88 7.31 -2.91 -0.02 3.86 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 13 C 0.31 12.57 4.55 133.06 0.61 13.18 16 14 N -0.54 -21.03 9.44 -193.17 -1.82 -22.85 16 15 C 0.11 2.91 11.17 84.63 0.95 3.86 16 16 C -0.16 -3.37 10.10 22.37 0.23 -3.15 16 17 C -0.05 -1.13 9.93 22.45 0.22 -0.91 16 18 C -0.14 -4.72 6.27 22.54 0.14 -4.58 16 19 Br -0.03 -0.89 33.12 -20.37 -0.67 -1.57 16 20 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.04 1.34 7.60 -2.38 -0.02 1.32 16 22 H 0.06 2.00 8.14 -2.38 -0.02 1.99 16 23 H 0.07 3.28 6.58 -2.39 -0.02 3.26 16 24 H 0.03 1.22 7.41 -2.38 -0.02 1.21 16 25 H -0.01 -0.67 8.06 -2.39 -0.02 -0.69 16 26 H -0.03 -1.98 8.12 -2.39 -0.02 -2.00 16 27 H 0.26 15.32 8.31 -92.72 -0.77 14.55 16 28 H 0.19 3.66 8.06 -2.91 -0.02 3.63 16 29 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -70.72 280.03 2.74 -67.98 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.13 Total: -0.33 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.40 Total: -7.82 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -4.14 Total: -105.31 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.67 Total: -1.57 kcal Total: -70.72 2.74 -67.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.639 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds