Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38892 * 120.00057 * 180.27625 * 4 2 1 6 6 N 1.29492 * 125.26030 * 179.72382 * 5 4 2 7 7 C 1.33677 * 115.67509 * 179.78848 * 6 5 4 8 8 C 1.47035 * 122.52115 * 180.23679 * 7 6 5 9 9 O 1.21568 * 120.00232 * 180.29014 * 8 7 6 10 10 O 1.34817 * 119.99988 * 0.28551 * 8 7 6 11 11 C 1.45197 * 117.00440 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47305 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47022 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00510 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47034 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47025 * 119.99869 * 17 15 13 20 20 H 1.48504 * 109.47227 * 239.99939 * 17 15 13 21 21 C 1.34980 * 114.96509 * 0.50268 * 7 6 5 22 22 S 1.70982 * 109.19081 * 359.73668 * 21 7 6 23 23 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46799 * 119.99882 * 1 2 3 25 25 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 26 26 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 27 27 H 1.09003 * 109.47387 * 300.00026 * 11 10 8 28 28 H 1.09001 * 109.46949 * 60.00211 * 11 10 8 29 29 H 1.08994 * 109.47678 * 300.00144 * 12 11 10 30 30 H 1.09001 * 109.46949 * 60.00205 * 12 11 10 31 31 H 0.96997 * 120.00291 * 180.02562 * 16 15 13 32 32 H 1.08001 * 125.40623 * 179.76467 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5698 -1.1672 0.0115 6 7 4.3173 -2.2245 0.0224 7 6 5.6354 -2.0020 0.0218 8 6 6.6213 -3.0929 0.0281 9 8 7.8099 -2.8380 0.0327 10 8 6.2070 -4.3758 0.0290 11 6 7.2355 -5.4007 0.0359 12 6 6.5786 -6.7825 0.0353 13 6 7.6461 -7.8462 0.0418 14 1 8.6887 -7.5649 0.0457 15 6 7.2916 -9.1786 0.0419 16 7 6.0219 -9.5213 0.0358 17 14 8.6148 -10.4971 0.0508 18 1 9.9536 -9.8548 0.0575 19 1 8.4650 -11.3406 1.2638 20 1 8.4777 -11.3442 -1.1612 21 6 5.9935 -0.7005 0.0207 22 16 4.5856 0.2697 0.0129 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5138 0.8900 26 1 1.6959 -2.0073 0.0057 27 1 7.8597 -5.2952 -0.8514 28 1 7.8514 -5.2913 0.9286 29 1 5.9541 -6.8884 0.9223 30 1 5.9629 -6.8916 -0.8576 31 1 5.7726 -10.4587 0.0362 32 1 7.0082 -0.3307 0.0237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043768294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -80.574980 kcal Electronic energy + Delta-G solvation = -18814.455804 eV Core-core repulsion = 15481.236710 eV Total energy + Delta-G solvation = -3333.219094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84361 -40.19914 -38.83242 -36.09292 -35.28884 -33.30233 -31.26113 -30.27118 -29.51533 -26.32755 -24.67270 -23.00545 -21.81467 -20.87981 -19.92592 -18.84548 -17.61666 -17.22013 -16.50964 -16.41014 -16.15716 -15.90880 -15.74852 -14.66209 -14.54094 -14.48675 -13.62007 -13.23636 -13.21198 -12.82760 -12.81627 -12.35313 -12.13716 -11.43709 -11.18781 -11.00534 -10.73818 -10.72557 -10.61810 -10.38321 -10.05965 -9.62424 -9.61214 -9.58413 -9.25399 -8.58314 -8.41810 -6.07718 -4.11811 0.33311 0.75344 1.47380 1.48748 2.18535 2.19836 3.25414 3.29195 3.31329 3.36810 3.42565 4.06534 4.32918 4.44347 4.68265 4.77839 5.02247 5.20543 5.26770 5.28822 5.44931 5.77918 6.11415 6.13040 6.40668 6.67475 6.92015 7.27925 7.33135 7.60440 7.67290 7.89899 8.20108 8.28733 8.94060 9.52274 11.03869 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.003089 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.883963 B = 9063.070077 C =10006.202832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.513 3.487 3 O -0.513 6.513 4 N -0.621 5.621 5 C 0.246 3.754 6 N -0.450 5.450 7 C 0.054 3.946 8 C 0.535 3.465 9 O -0.509 6.509 10 O -0.333 6.333 11 C 0.073 3.927 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.259 4.259 22 S 0.274 5.726 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.429 0.571 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 21.487 -0.091 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.300 3.700 3 O -0.388 6.388 4 N -0.272 5.272 5 C -0.124 4.124 6 N -0.172 5.172 7 C -0.079 4.079 8 C 0.377 3.623 9 O -0.399 6.399 10 O -0.248 6.248 11 C 0.000 4.000 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.402 4.402 22 S 0.526 5.474 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.269 0.731 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.103 22.657 -0.086 25.687 hybrid contribution 1.196 -2.171 0.006 2.479 sum -10.906 20.486 -0.080 23.208 Atomic orbital electron populations 1.21893 0.88452 1.06723 1.05499 1.21363 0.91749 0.82023 0.74828 1.90681 1.69654 1.30690 1.47755 1.42890 1.01510 1.11745 1.71049 1.24356 0.90058 0.93407 1.04584 1.67141 1.03073 1.28692 1.18334 1.18947 0.88245 0.91641 1.09103 1.19878 0.86003 0.83248 0.73198 1.90846 1.17049 1.85175 1.46805 1.86716 1.42064 1.14221 1.81825 1.23727 0.88879 0.86339 1.01034 1.19164 0.96865 0.86183 0.98983 1.21025 0.92757 0.90557 1.51946 0.92181 1.24986 0.95586 0.98699 0.94929 1.69986 1.15593 1.17308 1.49948 0.86420 0.81794 0.81455 0.77667 1.19588 1.20852 1.20848 1.26983 1.08178 0.97398 1.07607 1.84814 0.90758 1.05491 1.66319 0.87799 0.88241 0.88232 0.73094 0.92161 0.92158 0.95279 0.95281 0.92804 0.78987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.32 36.01 0.37 -0.05 16 2 C 0.51 3.73 7.90 -10.98 -0.09 3.64 16 3 O -0.51 -5.41 14.59 5.55 0.08 -5.33 16 4 N -0.62 -5.22 5.40 -11.92 -0.06 -5.28 16 5 C 0.25 3.03 8.36 -87.56 -0.73 2.30 16 6 N -0.45 -7.09 10.61 -10.54 -0.11 -7.20 16 7 C 0.05 0.89 6.66 -84.66 -0.56 0.33 16 8 C 0.54 10.64 7.93 34.30 0.27 10.91 16 9 O -0.51 -10.66 16.45 -19.32 -0.32 -10.98 16 10 O -0.33 -7.39 10.14 -40.81 -0.41 -7.80 16 11 C 0.07 1.70 5.42 37.16 0.20 1.90 16 12 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 13 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.26 -3.39 10.55 29.58 0.31 -3.08 16 22 S 0.27 3.04 20.29 -107.50 -2.18 0.86 16 23 H 0.10 0.25 8.12 -51.93 -0.42 -0.17 16 24 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 25 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.43 2.57 8.82 -40.82 -0.36 2.21 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.19 2.19 7.99 -52.49 -0.42 1.77 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -35.43 308.50 -6.71 -42.14 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: -3.28 Total: -4.48 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.79 Total: 2.76 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.56 Total: -38.45 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.65 Total: -24.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.18 Total: 0.86 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.43 -6.71 -42.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043768294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.434 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds