Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38892 * 120.00057 * 180.27625 * 4 2 1 6 6 N 1.29492 * 125.26030 * 179.72382 * 5 4 2 7 7 C 1.33677 * 115.67509 * 179.78848 * 6 5 4 8 8 C 1.47035 * 122.52115 * 180.23679 * 7 6 5 9 9 O 1.21568 * 120.00232 * 180.29014 * 8 7 6 10 10 O 1.34817 * 119.99988 * 0.28551 * 8 7 6 11 11 C 1.45197 * 117.00440 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47305 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47022 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00510 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47034 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47025 * 119.99869 * 17 15 13 20 20 H 1.48504 * 109.47227 * 239.99939 * 17 15 13 21 21 C 1.34980 * 114.96509 * 0.50268 * 7 6 5 22 22 S 1.70982 * 109.19081 * 359.73668 * 21 7 6 23 23 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46799 * 119.99882 * 1 2 3 25 25 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 26 26 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 27 27 H 1.09003 * 109.47387 * 300.00026 * 11 10 8 28 28 H 1.09001 * 109.46949 * 60.00211 * 11 10 8 29 29 H 1.08994 * 109.47678 * 300.00144 * 12 11 10 30 30 H 1.09001 * 109.46949 * 60.00205 * 12 11 10 31 31 H 0.96997 * 120.00291 * 180.02562 * 16 15 13 32 32 H 1.08001 * 125.40623 * 179.76467 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5698 -1.1672 0.0115 6 7 4.3173 -2.2245 0.0224 7 6 5.6354 -2.0020 0.0218 8 6 6.6213 -3.0929 0.0281 9 8 7.8099 -2.8380 0.0327 10 8 6.2070 -4.3758 0.0290 11 6 7.2355 -5.4007 0.0359 12 6 6.5786 -6.7825 0.0353 13 6 7.6461 -7.8462 0.0418 14 1 8.6887 -7.5649 0.0457 15 6 7.2916 -9.1786 0.0419 16 7 6.0219 -9.5213 0.0358 17 14 8.6148 -10.4971 0.0508 18 1 9.9536 -9.8548 0.0575 19 1 8.4650 -11.3406 1.2638 20 1 8.4777 -11.3442 -1.1612 21 6 5.9935 -0.7005 0.0207 22 16 4.5856 0.2697 0.0129 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5138 0.8900 26 1 1.6959 -2.0073 0.0057 27 1 7.8597 -5.2952 -0.8514 28 1 7.8514 -5.2913 0.9286 29 1 5.9541 -6.8884 0.9223 30 1 5.9629 -6.8916 -0.8576 31 1 5.7726 -10.4587 0.0362 32 1 7.0082 -0.3307 0.0237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043768294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -105.312909 kcal Electronic energy + Delta-G solvation = -18815.528521 eV Core-core repulsion = 15481.236710 eV Total energy + Delta-G solvation = -3334.291811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88919 -41.30240 -40.05917 -37.76152 -36.09618 -35.45800 -32.42448 -31.88864 -30.25172 -27.86325 -26.38232 -24.16878 -22.89061 -22.56989 -21.24114 -19.90517 -18.84272 -18.33976 -17.92795 -17.70641 -17.51149 -17.32835 -16.97099 -16.50354 -15.66806 -15.29554 -14.85076 -14.77644 -14.41006 -14.35171 -13.43049 -13.22849 -13.21368 -13.12654 -13.00150 -12.64168 -12.61379 -12.28038 -12.07195 -11.63863 -11.52070 -11.42055 -11.28497 -11.07926 -10.62932 -10.57777 -9.54236 -8.27555 -6.41248 -0.70198 -0.17365 0.40785 0.43030 1.36842 1.40179 1.41857 1.43691 1.55638 1.81315 2.00318 2.39966 3.06570 3.17688 3.67886 3.95245 4.00533 4.19029 4.21090 4.40177 4.53212 4.66089 4.66971 4.85765 5.13523 5.17010 5.42839 5.43817 5.68687 5.74504 6.04582 6.33964 6.66631 6.67699 6.72682 7.28476 8.85577 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.028892 B = 0.003089 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.883963 B = 9063.070077 C =10006.202832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.512 3.488 3 O -0.546 6.546 4 N -0.614 5.614 5 C 0.240 3.760 6 N -0.488 5.488 7 C 0.019 3.981 8 C 0.534 3.466 9 O -0.527 6.527 10 O -0.348 6.348 11 C 0.087 3.913 12 C 0.033 3.967 13 C -0.549 4.549 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.248 4.248 22 S 0.337 5.663 23 H 0.109 0.891 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.440 0.560 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.268 0.732 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 22.516 -0.094 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.303 3.697 3 O -0.423 6.423 4 N -0.267 5.267 5 C -0.130 4.130 6 N -0.211 5.211 7 C -0.113 4.113 8 C 0.377 3.623 9 O -0.417 6.417 10 O -0.264 6.264 11 C 0.014 3.986 12 C -0.004 4.004 13 C -0.587 4.587 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.566 5.566 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.391 4.391 22 S 0.590 5.410 23 H 0.127 0.873 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.282 0.718 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.664 23.703 -0.089 26.874 hybrid contribution 1.203 -2.306 0.006 2.601 sum -11.461 21.397 -0.084 24.273 Atomic orbital electron populations 1.21996 0.84272 1.07767 1.07533 1.22367 0.93409 0.80873 0.73070 1.90650 1.70535 1.31751 1.49394 1.43165 0.99950 1.13005 1.70593 1.24689 0.91658 0.93474 1.03225 1.67051 1.03070 1.30588 1.20371 1.18634 0.88366 0.91343 1.12990 1.20427 0.86762 0.82827 0.72248 1.90813 1.17897 1.85172 1.47857 1.86697 1.41726 1.15378 1.82576 1.23297 0.88635 0.85318 1.01323 1.18964 0.96297 0.88583 0.96586 1.21392 0.93296 0.91498 1.52517 0.91528 1.26000 0.98139 1.01240 0.94008 1.70109 1.17866 1.18265 1.50376 0.85231 0.78723 0.78002 0.78053 1.18574 1.19978 1.19969 1.27309 1.10168 0.96661 1.04934 1.84705 0.88467 1.03342 1.64528 0.87261 0.86049 0.86050 0.71813 0.91793 0.91787 0.97676 0.97683 0.92296 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 10.32 71.24 0.74 0.43 16 2 C 0.51 6.34 7.90 87.66 0.69 7.03 16 3 O -0.55 -10.46 14.59 -3.04 -0.04 -10.51 16 4 N -0.61 -9.39 5.40 -310.00 -1.67 -11.06 16 5 C 0.24 5.70 8.36 179.28 1.50 7.20 16 6 N -0.49 -15.46 10.61 -187.25 -1.99 -17.44 16 7 C 0.02 0.65 6.66 40.42 0.27 0.91 16 8 C 0.53 21.77 7.93 70.13 0.56 22.32 16 9 O -0.53 -22.39 16.45 19.61 0.32 -22.07 16 10 O -0.35 -16.03 10.14 -57.29 -0.58 -16.61 16 11 C 0.09 4.22 5.42 71.98 0.39 4.61 16 12 C 0.03 1.86 5.35 29.85 0.16 2.02 16 13 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 14 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 15 C 0.01 0.29 5.46 84.66 0.46 0.75 16 16 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 17 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 C -0.25 -6.26 10.55 67.07 0.71 -5.55 16 22 S 0.34 6.90 20.29 -56.49 -1.15 5.76 16 23 H 0.11 0.18 8.12 -2.39 -0.02 0.17 16 24 H 0.12 -0.22 8.14 -2.39 -0.02 -0.23 16 25 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.44 4.64 8.82 -92.71 -0.82 3.82 16 27 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.21 4.43 7.99 -2.91 -0.02 4.41 16 Total: -1.00 -77.98 308.50 3.26 -74.73 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 0.35 Total: -0.84 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.70 Total: 7.94 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.38 Total: -84.74 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.30 Total: -49.19 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.15 Total: 5.76 kcal Total: -77.98 3.26 -74.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043768294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.585 kcal (2) G-P(sol) polarization free energy of solvation -77.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds