Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.31027 * 125.08228 * 0.02562 * 12 11 10 14 14 C 1.35951 * 109.63450 * 179.97438 * 13 12 11 15 15 C 1.39741 * 133.31965 * 179.97438 * 14 13 12 16 16 C 1.37847 * 119.78918 * 179.97438 * 15 14 13 17 17 F 1.35097 * 119.78344 * 180.02562 * 16 15 14 18 18 C 1.39065 * 120.42692 * 0.04715 * 16 15 14 19 19 F 1.35105 * 119.82149 * 179.97438 * 18 16 15 20 20 C 1.38116 * 120.36033 * 359.95586 * 18 16 15 21 21 C 1.38674 * 119.86499 * 0.02562 * 20 18 16 22 22 N 1.36659 * 125.07996 * 179.71925 * 12 11 10 23 23 H 0.97000 * 126.38295 * 0.02562 * 22 12 11 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.07995 * 120.09895 * 359.97438 * 15 14 13 30 30 H 1.07999 * 120.06527 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6367 -0.0009 12 6 6.1374 -4.3718 -0.0016 13 7 5.2122 -5.2996 -0.0024 14 6 5.7963 -6.5273 -0.0033 15 6 5.2902 -7.8298 -0.0039 16 6 6.1573 -8.9014 -0.0053 17 9 5.6679 -10.1606 -0.0064 18 6 7.5325 -8.6947 -0.0050 19 9 8.3712 -9.7539 -0.0059 20 6 8.0456 -7.4124 -0.0044 21 6 7.1857 -6.3245 -0.0034 22 7 7.3751 -4.9511 -0.0072 23 1 8.2273 -4.4878 -0.0112 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 4.2232 -7.9962 -0.0033 30 1 9.1144 -7.2573 -0.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044147953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = -27.907315 kcal Electronic energy + Delta-G solvation = -18413.139058 eV Core-core repulsion = 14971.116290 eV Total energy + Delta-G solvation = -3442.022768 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.049 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.64434 -48.71417 -42.22311 -37.03952 -33.92976 -33.42993 -31.38227 -30.19784 -29.29389 -25.75713 -24.15940 -22.85559 -21.99735 -20.92728 -19.15553 -18.29604 -17.73927 -17.08742 -16.58549 -16.58326 -15.75165 -15.46545 -15.27663 -15.14153 -14.50705 -14.45235 -14.06462 -13.77866 -13.54590 -13.20102 -12.83364 -11.99827 -11.94448 -11.71072 -11.30394 -11.08364 -10.68064 -10.45538 -10.32518 -10.23625 -9.82160 -9.36725 -9.06139 -8.67452 -8.66242 -7.52144 -6.16675 -4.17986 0.30545 0.81114 1.06890 2.24820 2.30773 2.76605 3.22863 3.24776 3.31141 3.32248 3.56127 3.94787 4.01735 4.33348 4.59839 4.71670 4.84455 5.15303 5.15886 5.36292 5.53685 5.64815 5.77970 5.86564 6.02695 6.37621 6.40838 6.78975 6.92547 7.03732 7.40674 7.54878 8.35975 8.86397 9.42210 10.95893 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.037443 B = 0.003206 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.633767 B = 8731.487097 C = 9458.674085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.064 4.064 11 S -0.033 6.033 12 C 0.291 3.709 13 N -0.485 5.485 14 C 0.082 3.918 15 C -0.073 4.073 16 C 0.065 3.935 17 F -0.127 7.127 18 C 0.078 3.922 19 F -0.126 7.126 20 C -0.114 4.114 21 C 0.063 3.937 22 N -0.584 5.584 23 H 0.429 0.571 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.980 -12.830 0.007 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.096 0.904 9 C -0.040 4.040 10 C -0.213 4.213 11 S 0.200 5.800 12 C -0.083 4.083 13 N -0.209 5.209 14 C -0.040 4.040 15 C -0.095 4.095 16 C 0.043 3.957 17 F -0.105 7.105 18 C 0.056 3.944 19 F -0.105 7.105 20 C -0.136 4.136 21 C -0.049 4.049 22 N -0.198 5.198 23 H 0.270 0.730 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.174 0.826 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.682 -11.727 0.008 21.218 hybrid contribution 0.900 -0.474 -0.020 1.018 sum 18.583 -12.201 -0.012 22.230 Atomic orbital electron populations 1.69887 1.06259 1.27199 1.49974 1.24959 0.94748 0.99081 0.94222 0.86812 0.80406 0.83611 0.78737 1.20028 1.21091 1.18895 1.20874 0.87903 0.95036 1.52255 0.90373 1.19465 0.97987 0.88911 0.97633 1.23846 0.85529 1.04860 1.07028 1.85854 1.15402 0.88045 1.90666 1.25944 0.81826 1.01371 0.99143 1.71208 1.29098 0.96460 1.24169 1.18746 0.89108 0.92675 1.03444 1.20000 1.00865 0.87738 1.00857 1.17055 0.89870 0.80226 1.08599 1.91535 1.88042 1.36640 1.94291 1.16962 0.85849 0.83871 1.07714 1.91532 1.70391 1.54380 1.94163 1.19496 1.00021 0.87954 1.06117 1.18451 0.95876 0.84117 1.06499 1.42988 1.08965 1.04055 1.63811 0.73033 0.92400 0.95417 0.95853 0.88677 0.88699 0.82635 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.52 -14.06 9.66 -34.44 -0.33 -14.39 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.00 4.04 -27.88 -0.11 -0.12 16 10 C -0.06 -1.20 5.09 37.16 0.19 -1.01 16 11 S -0.03 -0.49 22.31 -107.50 -2.40 -2.89 16 12 C 0.29 4.14 8.20 -88.44 -0.73 3.41 16 13 N -0.48 -7.78 10.57 -10.89 -0.12 -7.90 16 14 C 0.08 1.14 7.22 -84.66 -0.61 0.53 16 15 C -0.07 -0.89 10.07 -39.16 -0.39 -1.29 16 16 C 0.07 0.76 7.29 -39.42 -0.29 0.47 16 17 F -0.13 -1.53 17.16 2.25 0.04 -1.49 16 18 C 0.08 0.85 7.30 -39.32 -0.29 0.56 16 19 F -0.13 -1.39 17.17 2.25 0.04 -1.35 16 20 C -0.11 -1.08 10.03 -39.46 -0.40 -1.48 16 21 C 0.06 0.73 7.29 -83.81 -0.61 0.12 16 22 N -0.58 -6.35 6.28 -10.56 -0.07 -6.41 16 23 H 0.43 3.13 8.96 -40.82 -0.37 2.76 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 27 H 0.09 1.82 8.14 -51.91 -0.42 1.39 16 28 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 29 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 289.77 15.07 4.37 4.37 Total: -1.00 -29.84 289.77 -8.11 -37.95 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -2.41 Total: -1.06 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -3.67 Total: -11.26 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.59 Total: -40.13 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.40 Total: -2.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.84 -8.11 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044147953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.039 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds